Cow genome map
| Conread name: | Ss1.1-rjej03b_m20.5 |
| Conread position: | 1-341 |
| Cow position: | chr23:24654061-24654401 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-387 |
| Cow position: | chr23:25698460-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 157 |
| Conread position: | 1-387 |
| Cow position: | chr23:25724099-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-399 |
| Cow position: | chr23:25626643-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 257 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 303, 314 |
| Conread position: | 1-406 |
| Cow position: | chr23:24626336-24626741 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 1-484 |
| Cow position: | chr23:25660263-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 123 |
| Conread position: | 1-549 |
| Cow position: | chr23:25698627-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 7 |
| Conread position: | 1-562 |
| Cow position: | chr23:25660180-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 6 |
| Conread position: | 1-605 |
| Cow position: | chr23:24536017-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 122 |
| Conread position: | 1-617 |
| Cow position: | chr23:24639497-24640112 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 586, 7 |
| Conread position: | 1-642 |
| Cow position: | chr23:24547302-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 525, 532 |
| Conread position: | 1-735 |
| Cow position: | chr23:24560862-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-891 |
| Cow position: | chr23:24522539-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 6 |
| Conread position: | 3-819 |
| Cow position: | chr23:25626229-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 5 |
| Conread position: | 14-437 |
| Cow position: | chr23:24522611-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-762 |
| Cow position: | chr23:24639343-24640090 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 738, 0 |
| Conread position: | 20-578 |
| Cow position: | chr23:24547199-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-907 |
| Cow position: | chr23:25625999-25626877 (view UCSC Genome Browser custom track) |
| Alignm length: | 886 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 239 |
| Conread position: | 27-654 |
| Cow position: | chr23:25626420-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 28-486 |
| Cow position: | chr23:24560583-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 144 |
| Conread position: | 28-630 |
| Cow position: | chr23:24522762-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 28-838 |
| Cow position: | chr23:24639271-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 332 |
| Conread position: | 28-902 |
| Cow position: | chr23:25626169-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 267 |
| Conread position: | 35-890 |
| Cow position: | chr23:25626092-25626944 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 567 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 491, 0 |
| Conread position: | 36-633 |
| Cow position: | chr23:25698677-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 37-733 |
| Cow position: | chr23:24560742-24560044 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 629, 616 |
| Conread position: | 44-652 |
| Cow position: | chr23:25660138-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 46-703 |
| Cow position: | chr23:24522826-24522174 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 36 |
| Conread position: | 51-500 |
| Cow position: | chr23:24626302-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 0 |
| Conread position: | 52-907 |
| Cow position: | chr23:25625941-25626793 (view UCSC Genome Browser custom track) |
| Alignm length: | 857 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 58-735 |
| Cow position: | chr23:24547329-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 304 |
| Conread position: | 58-819 |
| Cow position: | chr23:24560889-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 42 |
| Conread position: | 61-669 |
| Cow position: | chr23:24626156-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 61-689 |
| Cow position: | chr23:24536041-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 595, 0 |
| Conread position: | 66-907 |
| Cow position: | chr23:24639225-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 847 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 131 |
| Conread position: | 67-409 |
| Cow position: | chr23:24654043-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 115, 106 |
| Conread position: | 78-741 |
| Cow position: | chr23:25724106-25723445 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 96 |
| Conread position: | 101-722 |
| Cow position: | chr23:25698696-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 388 |
| Conread position: | 122-904 |
| Cow position: | chr23:24639197-24639979 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 230 |
| Conread position: | 136-736 |
| Cow position: | chr23:25660146-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 142-819 |
| Cow position: | chr23:24547329-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 674, 0 |
| Conread position: | 142-902 |
| Cow position: | chr23:24560889-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 762 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 157-555 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 163-734 |
| Cow position: | chr23:24536023-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 166-767 |
| Cow position: | chr23:25698715-25698114 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 204-858 |
| Cow position: | chr23:24536066-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 631, 614 |
| Conread position: | 214-857 |
| Cow position: | chr23:24522826-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 216-907 |
| Cow position: | chr23:24560899-24560208 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 217-484 |
| Cow position: | chr23:24654109-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 56, 49 |
| Conread position: | 219-820 |
| Cow position: | chr23:25660145-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 225-903 |
| Cow position: | chr23:24547330-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 235-694 |
| Cow position: | chr23:24654043-24654496 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 373 |
| Conread position: | 236-639 |
| Cow position: | chr23:25724116-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 271-752 |
| Cow position: | chr23:24626270-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 287-863 |
| Cow position: | chr23:24536067-24535491 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 296-907 |
| Cow position: | chr23:24522828-24522222 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 38 |
| Conread position: | 303-857 |
| Cow position: | chr23:25660145-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 454, 464 |
| Conread position: | 319-652 |
| Cow position: | chr23:24654043-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 329-722 |
| Cow position: | chr23:25724107-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 350-907 |
| Cow position: | chr23:25698699-25698142 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 518 |
| Conread position: | 384-907 |
| Cow position: | chr23:24536054-24535531 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 157 |
| Conread position: | 387-832 |
| Cow position: | chr23:24626302-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 0 |
| Conread position: | 387-901 |
| Cow position: | chr23:25660145-25660659 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 224 |
| Conread position: | 394-907 |
| Cow position: | chr23:24547329-24546816 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 203 |
| Conread position: | 403-862 |
| Cow position: | chr23:24654043-24654496 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 0 |
| Conread position: | 404-807 |
| Cow position: | chr23:25724116-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 383 |
| Conread position: | 437-892 |
| Cow position: | chr23:24626268-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 448-902 |
| Cow position: | chr23:25698685-25698231 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 457-904 |
| Cow position: | chr23:24547350-24546903 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 464-907 |
| Cow position: | chr23:24560903-24560460 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 405 |
| Conread position: | 472-907 |
| Cow position: | chr23:25660146-25660581 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 497-863 |
| Cow position: | chr23:25724107-25723741 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 518-892 |
| Cow position: | chr23:25698699-25698325 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 351 |
| Conread position: | 555-907 |
| Cow position: | chr23:24626302-24626654 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 317 |
| Conread position: | 570-907 |
| Cow position: | chr23:24654042-24654379 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 577-904 |
| Cow position: | chr23:25724111-25723784 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 603-907 |
| Cow position: | chr23:24626265-24626570 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 5, 32 |
| Conread position: | 625-904 |
| Cow position: | chr23:24560910-24560631 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 666-907 |
| Cow position: | chr23:25724106-25723865 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 729-907 |
| Cow position: | chr23:24547330-24547152 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.