Cow genome map
| Conread name: | Ss1.1-rjej03b_m20.5 |
| Conread position: | 1-336 |
| Cow position: | chr24:17013192-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-557 |
| Cow position: | chr24:17070487-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 7 |
| Conread position: | 1-696 |
| Cow position: | chr24:17078150-17077456 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 444 |
| Conread position: | 1-767 |
| Cow position: | chr24:17078234-17077469 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 364 |
| Conread position: | 1-871 |
| Cow position: | chr24:17035678-17034818 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 6 |
| Conread position: | 1-902 |
| Cow position: | chr24:17035930-17035030 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 7 |
| Conread position: | 1-902 |
| Cow position: | chr24:17036099-17035198 (view UCSC Genome Browser custom track) |
| Alignm length: | 903 |
| Alignm identity: | 614 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 664, 670 |
| Conread position: | 1-907 |
| Cow position: | chr24:17036350-17035445 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 624 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 7 |
| Conread position: | 1-907 |
| Cow position: | chr24:17036519-17035613 (view UCSC Genome Browser custom track) |
| Alignm length: | 908 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 700, 688 |
| Conread position: | 3-490 |
| Cow position: | chr24:17070573-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 4-831 |
| Cow position: | chr24:17035760-17034934 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 685, 692 |
| Conread position: | 5-325 |
| Cow position: | chr24:17070741-17071062 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 10, 275 |
| Conread position: | 14-902 |
| Cow position: | chr24:17036254-17035366 (view UCSC Genome Browser custom track) |
| Alignm length: | 892 |
| Alignm identity: | 626 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 423 |
| Conread position: | 16-893 |
| Cow position: | chr24:17036000-17035123 (view UCSC Genome Browser custom track) |
| Alignm length: | 880 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 253 |
| Conread position: | 16-902 |
| Cow position: | chr24:17036168-17035282 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 163 |
| Conread position: | 19-902 |
| Cow position: | chr24:17036417-17035534 (view UCSC Genome Browser custom track) |
| Alignm length: | 886 |
| Alignm identity: | 612 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 160 |
| Conread position: | 26-899 |
| Cow position: | chr24:17035822-17034949 (view UCSC Genome Browser custom track) |
| Alignm length: | 875 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 754, 747 |
| Conread position: | 27-869 |
| Cow position: | chr24:17078292-17077450 (view UCSC Genome Browser custom track) |
| Alignm length: | 844 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 838, 794 |
| Conread position: | 36-659 |
| Cow position: | chr24:17070437-17071060 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-907 |
| Cow position: | chr24:17036548-17035697 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 123 |
| Conread position: | 58-900 |
| Cow position: | chr24:17078345-17077503 (view UCSC Genome Browser custom track) |
| Alignm length: | 845 |
| Alignm identity: | 529 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 59-400 |
| Cow position: | chr24:17013165-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-263 |
| Cow position: | chr24:16986433-16986635 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 121, 114 |
| Conread position: | 70-904 |
| Cow position: | chr24:17036615-17035784 (view UCSC Genome Browser custom track) |
| Alignm length: | 836 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 71-739 |
| Cow position: | chr24:17070388-17071056 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 125-500 |
| Cow position: | chr24:17013147-17013521 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 163-356 |
| Cow position: | chr24:16986451-16986644 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-443 |
| Cow position: | chr24:16986425-16986647 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-829 |
| Cow position: | chr24:17070454-17071062 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 224-566 |
| Cow position: | chr24:17013162-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-907 |
| Cow position: | chr24:17078389-17077748 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 14 |
| Conread position: | 289-912 |
| Cow position: | chr24:17070438-17071061 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 311-672 |
| Cow position: | chr24:17013165-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 123 |
| Conread position: | 322-904 |
| Cow position: | chr24:17070387-17070969 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 323-524 |
| Cow position: | chr24:16986443-16986644 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 99 |
| Conread position: | 394-736 |
| Cow position: | chr24:17013166-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 395-624 |
| Cow position: | chr24:16986431-16986660 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 461-820 |
| Cow position: | chr24:17013147-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 493-703 |
| Cow position: | chr24:16986445-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 545-902 |
| Cow position: | chr24:17013147-17013504 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 563-780 |
| Cow position: | chr24:16986431-16986648 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 623-907 |
| Cow position: | chr24:17070351-17070636 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 667-863 |
| Cow position: | chr24:16986451-16986647 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.