Cow genome map

Conread name: Ss1.1-rjej03b_m20.5

Conread position: 1-188
Cow position: chr28:33210423-33210611 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 139, 172

Conread position: 1-340
Cow position: chr28:9290364-9290700 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 229
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 211, 6

Conread position: 1-489
Cow position: chr28:9253131-9253618 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 7

Conread position: 1-494
Cow position: chr28:34696107-34696598 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 96

Conread position: 1-497
Cow position: chr28:7810459-7810946 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 317
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 195, 76

Conread position: 1-654
Cow position: chr28:9252962-9253615 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-819
Cow position: chr28:7758032-7758832 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 6

Conread position: 1-892
Cow position: chr28:7757444-7758334 (view UCSC Genome Browser custom track)
Alignm length: 893
Alignm identity: 592
Alignm E-value: 0
Alignm gaps (pig, cow): 517, 7

Conread position: 1-902
Cow position: chr28:9298844-9299724 (view UCSC Genome Browser custom track)
Alignm length: 903
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 6

Conread position: 1-903
Cow position: chr28:7757696-7758581 (view UCSC Genome Browser custom track)
Alignm length: 907
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 6

Conread position: 3-356
Cow position: chr28:33210257-33210611 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 0

Conread position: 4-746
Cow position: chr28:11334107-11333371 (view UCSC Genome Browser custom track)
Alignm length: 755
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 94

Conread position: 4-768
Cow position: chr28:11333939-11333175 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 265

Conread position: 14-767
Cow position: chr28:7758128-7758865 (view UCSC Genome Browser custom track)
Alignm length: 757
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 184

Conread position: 19-834
Cow position: chr28:9298946-9299739 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 526
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 48

Conread position: 20-746
Cow position: chr28:34695874-34696598 (view UCSC Genome Browser custom track)
Alignm length: 729
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 106

Conread position: 25-907
Cow position: chr28:9289807-9290679 (view UCSC Genome Browser custom track)
Alignm length: 890
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 76

Conread position: 26-466
Cow position: chr28:34673491-34673931 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 273
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 63, 72

Conread position: 26-902
Cow position: chr28:9298286-9299155 (view UCSC Genome Browser custom track)
Alignm length: 883
Alignm identity: 543
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 24

Conread position: 28-508
Cow position: chr28:9290224-9290700 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 28-901
Cow position: chr28:9298704-9299560 (view UCSC Genome Browser custom track)
Alignm length: 877
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 110

Conread position: 33-901
Cow position: chr28:34695719-34696585 (view UCSC Genome Browser custom track)
Alignm length: 873
Alignm identity: 552
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 73

Conread position: 35-552
Cow position: chr28:34679499-34678985 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 336
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 77, 62

Conread position: 35-664
Cow position: chr28:7810325-7810945 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 203

Conread position: 36-549
Cow position: chr28:34673417-34673930 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 317
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 56, 62

Conread position: 36-671
Cow position: chr28:9290066-9290695 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 147

Conread position: 36-864
Cow position: chr28:11333991-11333161 (view UCSC Genome Browser custom track)
Alignm length: 841
Alignm identity: 522
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 326

Conread position: 36-902
Cow position: chr28:9252747-9253611 (view UCSC Genome Browser custom track)
Alignm length: 871
Alignm identity: 578
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 127

Conread position: 37-548
Cow position: chr28:7758387-7758898 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 325
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 168, 152

Conread position: 37-902
Cow position: chr28:7757983-7758831 (view UCSC Genome Browser custom track)
Alignm length: 867
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 714, 317

Conread position: 40-907
Cow position: chr28:7757398-7758265 (view UCSC Genome Browser custom track)
Alignm length: 870
Alignm identity: 577
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 133

Conread position: 41-852
Cow position: chr28:11334154-11333349 (view UCSC Genome Browser custom track)
Alignm length: 815
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 129

Conread position: 41-907
Cow position: chr28:9252587-9253448 (view UCSC Genome Browser custom track)
Alignm length: 872
Alignm identity: 559
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 83

Conread position: 52-554
Cow position: chr28:34679564-34679072 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 327
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 226, 15

Conread position: 58-449
Cow position: chr28:33210228-33210620 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 37

Conread position: 60-907
Cow position: chr28:7757334-7758181 (view UCSC Genome Browser custom track)
Alignm length: 852
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 136

Conread position: 64-907
Cow position: chr28:9252694-9253532 (view UCSC Genome Browser custom track)
Alignm length: 846
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 53

Conread position: 78-753
Cow position: chr28:7810284-7810950 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 120

Conread position: 112-863
Cow position: chr28:9252904-9253658 (view UCSC Genome Browser custom track)
Alignm length: 758
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 87

Conread position: 116-904
Cow position: chr28:9298209-9298991 (view UCSC Genome Browser custom track)
Alignm length: 796
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 32

Conread position: 125-902
Cow position: chr28:11334154-11333383 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 149

Conread position: 142-570
Cow position: chr28:33210228-33210657 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 270
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 334, 0

Conread position: 142-729
Cow position: chr28:7758324-7758911 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 389

Conread position: 214-845
Cow position: chr28:9298555-9299182 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 51

Conread position: 217-832
Cow position: chr28:7810339-7810945 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 148

Conread position: 217-894
Cow position: chr28:11334146-11333469 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 48

Conread position: 217-907
Cow position: chr28:9298643-9299314 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 23

Conread position: 222-619
Cow position: chr28:33210223-33210622 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 44

Conread position: 224-801
Cow position: chr28:34673353-34673930 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 360
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 282, 291

Conread position: 227-907
Cow position: chr28:34695829-34696509 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 157

Conread position: 235-904
Cow position: chr28:11334212-11333543 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 31

Conread position: 289-780
Cow position: chr28:34679579-34679098 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 313
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 76, 33

Conread position: 289-907
Cow position: chr28:7810327-7810936 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 210

Conread position: 290-904
Cow position: chr28:34695724-34696338 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 470, 477

Conread position: 310-689
Cow position: chr28:33210228-33210608 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 0

Conread position: 319-886
Cow position: chr28:34673364-34673931 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 294

Conread position: 319-907
Cow position: chr28:11334212-11333624 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 32

Conread position: 329-907
Cow position: chr28:7810283-7810852 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 202

Conread position: 394-822
Cow position: chr28:33210228-33210657 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 0

Conread position: 402-899
Cow position: chr28:11334213-11333716 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 374

Conread position: 406-863
Cow position: chr28:34679548-34679099 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 299
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 49, 31

Conread position: 420-901
Cow position: chr28:9289782-9290257 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 313
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 274, 103

Conread position: 448-854
Cow position: chr28:34679588-34679181 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 277
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 85, 42

Conread position: 458-902
Cow position: chr28:9252584-9253023 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 265
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 57, 50

Conread position: 459-907
Cow position: chr28:34695809-34696257 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 171

Conread position: 476-858
Cow position: chr28:34673353-34673735 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 129, 139

Conread position: 540-831
Cow position: chr28:7810251-7810533 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 40, 0

Conread position: 552-902
Cow position: chr28:11334231-11333881 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 219
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 207, 226

Conread position: 561-907
Cow position: chr28:33210227-33210574 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 0

Show alignments to all cow chromosomes.