Cow genome map

Conread name: Ss1.1-rjej03b_m20.5

Conread position: 1-377
Cow position: chr3:68045965-68046340 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 246
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 6, 0

Conread position: 1-651
Cow position: chr3:62722213-62721564 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 590, 6

Conread position: 1-655
Cow position: chr3:68027119-68027771 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 525

Conread position: 1-747
Cow position: chr3:62742805-62743526 (view UCSC Genome Browser custom track)
Alignm length: 751
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 7

Conread position: 1-902
Cow position: chr3:62742306-62743180 (view UCSC Genome Browser custom track)
Alignm length: 904
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 520, 49

Conread position: 3-576
Cow position: chr3:68045799-68046369 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 5

Conread position: 19-671
Cow position: chr3:62742907-62743534 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 90

Conread position: 28-735
Cow position: chr3:62722271-62721564 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 28-845
Cow position: chr3:62742665-62743459 (view UCSC Genome Browser custom track)
Alignm length: 820
Alignm identity: 540
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 84

Conread position: 29-901
Cow position: chr3:62742250-62743100 (view UCSC Genome Browser custom track)
Alignm length: 878
Alignm identity: 571
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 69

Conread position: 31-746
Cow position: chr3:77351267-77350565 (view UCSC Genome Browser custom track)
Alignm length: 722
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 69

Conread position: 31-768
Cow position: chr3:62742750-62743466 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 235

Conread position: 31-819
Cow position: chr3:62722352-62721564 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 23

Conread position: 31-903
Cow position: chr3:62742587-62743433 (view UCSC Genome Browser custom track)
Alignm length: 876
Alignm identity: 576
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 54

Conread position: 35-737
Cow position: chr3:68027069-68027769 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 677, 0

Conread position: 36-640
Cow position: chr3:68045747-68046351 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 134

Conread position: 60-821
Cow position: chr3:68027010-68027769 (view UCSC Genome Browser custom track)
Alignm length: 764
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 217

Conread position: 61-815
Cow position: chr3:68045605-68046356 (view UCSC Genome Browser custom track)
Alignm length: 756
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 6

Conread position: 80-801
Cow position: chr3:77351302-77350592 (view UCSC Genome Browser custom track)
Alignm length: 728
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 127

Conread position: 80-900
Cow position: chr3:62722387-62721567 (view UCSC Genome Browser custom track)
Alignm length: 824
Alignm identity: 569
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 57

Conread position: 113-902
Cow position: chr3:62742250-62743029 (view UCSC Genome Browser custom track)
Alignm length: 791
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 638, 95

Conread position: 119-600
Cow position: chr3:20194783-20195264 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 288
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 171, 165

Conread position: 212-480
Cow position: chr3:16020470-16020209 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 182
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 49, 0

Conread position: 215-854
Cow position: chr3:68027081-68027720 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 478, 492

Conread position: 215-899
Cow position: chr3:68045674-68046356 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 53

Conread position: 224-902
Cow position: chr3:68045599-68046277 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 97

Conread position: 228-904
Cow position: chr3:62722323-62721647 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 239-854
Cow position: chr3:77351311-77350704 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 131

Conread position: 278-902
Cow position: chr3:68026976-68027600 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 319

Conread position: 278-902
Cow position: chr3:68045569-68046193 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 319

Conread position: 280-907
Cow position: chr3:68027062-68027689 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 41

Conread position: 283-907
Cow position: chr3:62742252-62742870 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 82

Conread position: 287-799
Cow position: chr3:20194783-20195295 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 300
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 87, 75

Conread position: 322-902
Cow position: chr3:77351312-77350740 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 353
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 73, 114

Conread position: 397-907
Cow position: chr3:62722322-62721812 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 407-906
Cow position: chr3:68027021-68027519 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 208

Conread position: 465-907
Cow position: chr3:62722339-62721896 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 69

Conread position: 467-732
Cow position: chr3:16020467-16020209 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 476-907
Cow position: chr3:68045599-68046030 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 396

Conread position: 554-907
Cow position: chr3:68045593-68045946 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 597-902
Cow position: chr3:62722374-62722069 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 210
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 56, 36

Conread position: 607-907
Cow position: chr3:68045562-68045862 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 202
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 619-907
Cow position: chr3:68026981-68027269 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 10, 32

Conread position: 635-900
Cow position: chr3:16020467-16020209 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 173
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 668-902
Cow position: chr3:62722387-62722153 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 162
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 37, 29

Show alignments to all cow chromosomes.