Cow genome map
| Conread name: | Ss1.1-rjej03b_m20.5 |
| Conread position: | 1-377 |
| Cow position: | chr3:68045965-68046340 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1-651 |
| Cow position: | chr3:62722213-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 590, 6 |
| Conread position: | 1-655 |
| Cow position: | chr3:68027119-68027771 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 504, 525 |
| Conread position: | 1-747 |
| Cow position: | chr3:62742805-62743526 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 1-902 |
| Cow position: | chr3:62742306-62743180 (view UCSC Genome Browser custom track) |
| Alignm length: | 904 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 520, 49 |
| Conread position: | 3-576 |
| Cow position: | chr3:68045799-68046369 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 5 |
| Conread position: | 19-671 |
| Cow position: | chr3:62742907-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 90 |
| Conread position: | 28-735 |
| Cow position: | chr3:62722271-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-845 |
| Cow position: | chr3:62742665-62743459 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 84 |
| Conread position: | 29-901 |
| Cow position: | chr3:62742250-62743100 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 69 |
| Conread position: | 31-746 |
| Cow position: | chr3:77351267-77350565 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 69 |
| Conread position: | 31-768 |
| Cow position: | chr3:62742750-62743466 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 235 |
| Conread position: | 31-819 |
| Cow position: | chr3:62722352-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 792 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 31-903 |
| Cow position: | chr3:62742587-62743433 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 54 |
| Conread position: | 35-737 |
| Cow position: | chr3:68027069-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 677, 0 |
| Conread position: | 36-640 |
| Cow position: | chr3:68045747-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 134 |
| Conread position: | 60-821 |
| Cow position: | chr3:68027010-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 217 |
| Conread position: | 61-815 |
| Cow position: | chr3:68045605-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 6 |
| Conread position: | 80-801 |
| Cow position: | chr3:77351302-77350592 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 127 |
| Conread position: | 80-900 |
| Cow position: | chr3:62722387-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 824 |
| Alignm identity: | 569 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 57 |
| Conread position: | 113-902 |
| Cow position: | chr3:62742250-62743029 (view UCSC Genome Browser custom track) |
| Alignm length: | 791 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 638, 95 |
| Conread position: | 119-600 |
| Cow position: | chr3:20194783-20195264 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 171, 165 |
| Conread position: | 212-480 |
| Cow position: | chr3:16020470-16020209 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 215-854 |
| Cow position: | chr3:68027081-68027720 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 478, 492 |
| Conread position: | 215-899 |
| Cow position: | chr3:68045674-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 224-902 |
| Cow position: | chr3:68045599-68046277 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 97 |
| Conread position: | 228-904 |
| Cow position: | chr3:62722323-62721647 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 239-854 |
| Cow position: | chr3:77351311-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 131 |
| Conread position: | 278-902 |
| Cow position: | chr3:68026976-68027600 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 313, 319 |
| Conread position: | 278-902 |
| Cow position: | chr3:68045569-68046193 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 319 |
| Conread position: | 280-907 |
| Cow position: | chr3:68027062-68027689 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 283-907 |
| Cow position: | chr3:62742252-62742870 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 82 |
| Conread position: | 287-799 |
| Cow position: | chr3:20194783-20195295 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 322-902 |
| Cow position: | chr3:77351312-77350740 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 73, 114 |
| Conread position: | 397-907 |
| Cow position: | chr3:62722322-62721812 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-906 |
| Cow position: | chr3:68027021-68027519 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 208 |
| Conread position: | 465-907 |
| Cow position: | chr3:62722339-62721896 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 467-732 |
| Cow position: | chr3:16020467-16020209 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 476-907 |
| Cow position: | chr3:68045599-68046030 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 396 |
| Conread position: | 554-907 |
| Cow position: | chr3:68045593-68045946 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 597-902 |
| Cow position: | chr3:62722374-62722069 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 607-907 |
| Cow position: | chr3:68045562-68045862 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 619-907 |
| Cow position: | chr3:68026981-68027269 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 10, 32 |
| Conread position: | 635-900 |
| Cow position: | chr3:16020467-16020209 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 668-902 |
| Cow position: | chr3:62722387-62722153 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 29 |
Show alignments to all cow chromosomes.