Cow genome map
| Conread name: | Ss1.1-rjej03b_m20.5 |
| Conread position: | 1-170 |
| Cow position: | chr7:1440085-1440254 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 124, 108 |
| Conread position: | 1-516 |
| Cow position: | chr7:18390274-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1-646 |
| Cow position: | chr7:11601076-11600430 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 110 |
| Conread position: | 1-719 |
| Cow position: | chr7:42878913-42878195 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 665, 660 |
| Conread position: | 1-744 |
| Cow position: | chr7:1014714-1015457 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-899 |
| Cow position: | chr7:42879249-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 900 |
| Alignm identity: | 618 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 112 |
| Conread position: | 1-902 |
| Cow position: | chr7:3179725-3180625 (view UCSC Genome Browser custom track) |
| Alignm length: | 903 |
| Alignm identity: | 625 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 781, 6 |
| Conread position: | 1-902 |
| Cow position: | chr7:3179976-3180876 (view UCSC Genome Browser custom track) |
| Alignm length: | 904 |
| Alignm identity: | 622 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 519, 551 |
| Conread position: | 1-907 |
| Cow position: | chr7:3179809-3180714 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 621 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 700, 7 |
| Conread position: | 2-907 |
| Cow position: | chr7:1014386-1015284 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 6 |
| Conread position: | 3-724 |
| Cow position: | chr7:42878994-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 12 |
| Conread position: | 3-767 |
| Cow position: | chr7:18390024-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 769 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 11 |
| Conread position: | 4-767 |
| Cow position: | chr7:1439500-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 92 |
| Conread position: | 25-806 |
| Cow position: | chr7:11601218-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 786 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 7 |
| Conread position: | 25-890 |
| Cow position: | chr7:42879141-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 411 |
| Conread position: | 27-475 |
| Cow position: | chr7:18390383-18390831 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-902 |
| Cow position: | chr7:3179666-3180541 (view UCSC Genome Browser custom track) |
| Alignm length: | 879 |
| Alignm identity: | 605 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 501, 494 |
| Conread position: | 27-902 |
| Cow position: | chr7:3179918-3180793 (view UCSC Genome Browser custom track) |
| Alignm length: | 877 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 674, 670 |
| Conread position: | 28-334 |
| Cow position: | chr7:1438387-1438693 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 156, 189 |
| Conread position: | 28-617 |
| Cow position: | chr7:18390216-18390805 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-692 |
| Cow position: | chr7:1439607-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 28-724 |
| Cow position: | chr7:11601133-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-687 |
| Cow position: | chr7:8243447-8244096 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 87 |
| Conread position: | 35-902 |
| Cow position: | chr7:8325130-8325997 (view UCSC Genome Browser custom track) |
| Alignm length: | 878 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 70 |
| Conread position: | 36-431 |
| Cow position: | chr7:1438311-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-684 |
| Cow position: | chr7:18390140-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 128 |
| Conread position: | 36-853 |
| Cow position: | chr7:8325299-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 66 |
| Conread position: | 36-854 |
| Cow position: | chr7:8277910-8278719 (view UCSC Genome Browser custom track) |
| Alignm length: | 829 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 67 |
| Conread position: | 36-902 |
| Cow position: | chr7:8325215-8326081 (view UCSC Genome Browser custom track) |
| Alignm length: | 876 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 66 |
| Conread position: | 40-851 |
| Cow position: | chr7:1014669-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 817 |
| Alignm identity: | 539 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 323 |
| Conread position: | 40-851 |
| Cow position: | chr7:1439452-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 819 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 132 |
| Conread position: | 41-902 |
| Cow position: | chr7:42879377-42878516 (view UCSC Genome Browser custom track) |
| Alignm length: | 866 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 44-808 |
| Cow position: | chr7:8325560-8326320 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 6 |
| Conread position: | 44-907 |
| Cow position: | chr7:8243206-8244065 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 540 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 6 |
| Conread position: | 48-902 |
| Cow position: | chr7:8277586-8278440 (view UCSC Genome Browser custom track) |
| Alignm length: | 861 |
| Alignm identity: | 552 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 49-690 |
| Cow position: | chr7:11434895-11434275 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 51 |
| Conread position: | 49-855 |
| Cow position: | chr7:8242958-8243763 (view UCSC Genome Browser custom track) |
| Alignm length: | 818 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 49-902 |
| Cow position: | chr7:8277839-8278684 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 537 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 72 |
| Conread position: | 49-907 |
| Cow position: | chr7:8277335-8278193 (view UCSC Genome Browser custom track) |
| Alignm length: | 868 |
| Alignm identity: | 564 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 49-907 |
| Cow position: | chr7:8324976-8325834 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 53 |
| Conread position: | 57-902 |
| Cow position: | chr7:42879277-42878432 (view UCSC Genome Browser custom track) |
| Alignm length: | 849 |
| Alignm identity: | 590 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 58-767 |
| Cow position: | chr7:11434970-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 58-899 |
| Cow position: | chr7:1014273-1015108 (view UCSC Genome Browser custom track) |
| Alignm length: | 843 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 377 |
| Conread position: | 58-907 |
| Cow position: | chr7:8324817-8325666 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 59-869 |
| Cow position: | chr7:18389995-18390806 (view UCSC Genome Browser custom track) |
| Alignm length: | 814 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 113 |
| Conread position: | 60-695 |
| Cow position: | chr7:1438085-1438718 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 373 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 60-907 |
| Cow position: | chr7:8324735-8325582 (view UCSC Genome Browser custom track) |
| Alignm length: | 856 |
| Alignm identity: | 559 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 61-907 |
| Cow position: | chr7:42879442-42878595 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 568 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 60 |
| Conread position: | 63-907 |
| Cow position: | chr7:8242804-8243647 (view UCSC Genome Browser custom track) |
| Alignm length: | 853 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 65-907 |
| Cow position: | chr7:8277519-8278361 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 543 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 351 |
| Conread position: | 67-853 |
| Cow position: | chr7:11601261-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 73-601 |
| Cow position: | chr7:28846438-28846966 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 119-907 |
| Cow position: | chr7:8277235-8278025 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 123-901 |
| Cow position: | chr7:1439451-1440229 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 123-907 |
| Cow position: | chr7:1014668-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 787 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 64 |
| Conread position: | 142-857 |
| Cow position: | chr7:11434970-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 137 |
| Conread position: | 143-902 |
| Cow position: | chr7:18389995-18390754 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 105 |
| Conread position: | 205-619 |
| Cow position: | chr7:1438312-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 226, 238 |
| Conread position: | 215-907 |
| Cow position: | chr7:1439459-1440151 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 216-845 |
| Cow position: | chr7:1438073-1438700 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 379 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 216-904 |
| Cow position: | chr7:1014097-1014777 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 27 |
| Conread position: | 217-857 |
| Cow position: | chr7:12293339-12293979 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 157, 149 |
| Conread position: | 222-902 |
| Cow position: | chr7:8324729-8325409 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 222-902 |
| Cow position: | chr7:11434974-11434315 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 69 |
| Conread position: | 223-907 |
| Cow position: | chr7:11601190-11600506 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 227-904 |
| Cow position: | chr7:18389995-18390672 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-907 |
| Cow position: | chr7:3179705-3180378 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 276-915 |
| Cow position: | chr7:3179663-3180301 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 630, 0 |
| Conread position: | 289-768 |
| Cow position: | chr7:1438228-1438707 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 217, 231 |
| Conread position: | 294-902 |
| Cow position: | chr7:1438068-1438673 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 356 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 301-892 |
| Cow position: | chr7:28846498-28847089 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 358 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 155, 144 |
| Conread position: | 311-907 |
| Cow position: | chr7:18389995-18390591 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 112 |
| Conread position: | 323-865 |
| Cow position: | chr7:28846436-28846978 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 62 |
| Conread position: | 394-904 |
| Cow position: | chr7:11601270-11600761 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 43 |
| Conread position: | 401-904 |
| Cow position: | chr7:28846430-28846933 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 462, 454 |
| Conread position: | 456-902 |
| Cow position: | chr7:1439448-1439895 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 223, 139 |
| Conread position: | 465-902 |
| Cow position: | chr7:1014092-1014529 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 61, 72 |
| Conread position: | 493-907 |
| Cow position: | chr7:28846438-28846852 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 60 |
| Conread position: | 540-906 |
| Cow position: | chr7:11601209-11600843 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 59 |
| Conread position: | 562-907 |
| Cow position: | chr7:11601270-11600926 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.