Cow genome map
| Conread name: | Ss1.1-rjej03b_m20.5 |
| Conread position: | 1-434 |
| Cow position: | chr8:55581270-55581702 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 357, 7 |
| Conread position: | 1-677 |
| Cow position: | chr8:45201297-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 6 |
| Conread position: | 1-727 |
| Cow position: | chr8:46816660-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 172 |
| Conread position: | 1-853 |
| Cow position: | chr8:48407099-48406238 (view UCSC Genome Browser custom track) |
| Alignm length: | 865 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 357 |
| Conread position: | 1-853 |
| Cow position: | chr8:55580849-55581701 (view UCSC Genome Browser custom track) |
| Alignm length: | 855 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 171 |
| Conread position: | 1-901 |
| Cow position: | chr8:48407435-48406535 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 96 |
| Conread position: | 1-902 |
| Cow position: | chr8:46816157-46817057 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 7 |
| Conread position: | 1-902 |
| Cow position: | chr8:46816324-46817225 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 627 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 1-902 |
| Cow position: | chr8:46816408-46817309 (view UCSC Genome Browser custom track) |
| Alignm length: | 906 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 205 |
| Conread position: | 1-907 |
| Cow position: | chr8:45200793-45201699 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 221 |
| Conread position: | 1-907 |
| Cow position: | chr8:46815901-46816810 (view UCSC Genome Browser custom track) |
| Alignm length: | 916 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 31 |
| Conread position: | 1-907 |
| Cow position: | chr8:46816240-46817146 (view UCSC Genome Browser custom track) |
| Alignm length: | 910 |
| Alignm identity: | 615 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 353, 362 |
| Conread position: | 9-717 |
| Cow position: | chr8:55581024-55581733 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 444 |
| Conread position: | 22-902 |
| Cow position: | chr8:48407246-48406366 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 579 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 84 |
| Conread position: | 25-825 |
| Cow position: | chr8:48407579-48406779 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 554 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 250 |
| Conread position: | 26-907 |
| Cow position: | chr8:46816013-46816894 (view UCSC Genome Browser custom track) |
| Alignm length: | 884 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 78 |
| Conread position: | 27-642 |
| Cow position: | chr8:55581127-55581742 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 241 |
| Conread position: | 27-907 |
| Cow position: | chr8:45201239-45202111 (view UCSC Genome Browser custom track) |
| Alignm length: | 885 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 27-907 |
| Cow position: | chr8:46815600-46816474 (view UCSC Genome Browser custom track) |
| Alignm length: | 889 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 150 |
| Conread position: | 28-342 |
| Cow position: | chr8:6958026-6957713 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 159, 168 |
| Conread position: | 28-396 |
| Cow position: | chr8:46817023-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 28-907 |
| Cow position: | chr8:45200988-45201867 (view UCSC Genome Browser custom track) |
| Alignm length: | 882 |
| Alignm identity: | 604 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 142 |
| Conread position: | 31-907 |
| Cow position: | chr8:48407489-48406613 (view UCSC Genome Browser custom track) |
| Alignm length: | 881 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 142 |
| Conread position: | 32-859 |
| Cow position: | chr8:48407152-48406325 (view UCSC Genome Browser custom track) |
| Alignm length: | 831 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 32-896 |
| Cow position: | chr8:48407320-48406456 (view UCSC Genome Browser custom track) |
| Alignm length: | 870 |
| Alignm identity: | 591 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 146 |
| Conread position: | 35-897 |
| Cow position: | chr8:55580799-55581661 (view UCSC Genome Browser custom track) |
| Alignm length: | 864 |
| Alignm identity: | 573 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 832, 840 |
| Conread position: | 36-845 |
| Cow position: | chr8:45201164-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 812 |
| Alignm identity: | 546 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 137 |
| Conread position: | 36-851 |
| Cow position: | chr8:46816527-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 820 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 136 |
| Conread position: | 37-811 |
| Cow position: | chr8:46816612-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 534 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 48-907 |
| Cow position: | chr8:55580728-55581587 (view UCSC Genome Browser custom track) |
| Alignm length: | 863 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 55 |
| Conread position: | 58-903 |
| Cow position: | chr8:48407630-48406785 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 121 |
| Conread position: | 60-907 |
| Cow position: | chr8:45200936-45201783 (view UCSC Genome Browser custom track) |
| Alignm length: | 850 |
| Alignm identity: | 570 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 304 |
| Conread position: | 119-907 |
| Cow position: | chr8:46815848-46816642 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 85 |
| Conread position: | 205-638 |
| Cow position: | chr8:6958017-6957587 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 150, 158 |
| Conread position: | 225-899 |
| Cow position: | chr8:48407631-48406957 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 236-672 |
| Cow position: | chr8:6958069-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 401-818 |
| Cow position: | chr8:6958074-6957657 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 298 |
| Conread position: | 470-907 |
| Cow position: | chr8:48407638-48407201 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 498-902 |
| Cow position: | chr8:45200786-45201190 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 151, 144 |
| Conread position: | 545-902 |
| Cow position: | chr8:48407647-48407290 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-907 |
| Cow position: | chr8:45200778-45201111 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 129, 123 |
| Conread position: | 579-901 |
| Cow position: | chr8:6958063-6957742 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 274, 286 |
| Conread position: | 618-901 |
| Cow position: | chr8:48407658-48407375 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 747-902 |
| Cow position: | chr8:6958063-6957908 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.