Cow genome map
| Conread name: | Ss1.1-rjej03b_m20.5 |
| Conread position: | 1-702 |
| Cow position: | chrX:13826920-13826221 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 1-820 |
| Cow position: | chrX:25325056-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 545 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 264 |
| Conread position: | 1-830 |
| Cow position: | chrX:25309750-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 561 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 6 |
| Conread position: | 1-902 |
| Cow position: | chrX:25325224-25324323 (view UCSC Genome Browser custom track) |
| Alignm length: | 903 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 759, 778 |
| Conread position: | 1-902 |
| Cow position: | chrX:25325476-25324575 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 601 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 189 |
| Conread position: | 1-902 |
| Cow position: | chrX:29045547-29044668 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 598 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 6 |
| Conread position: | 1-904 |
| Cow position: | chrX:25325560-25324657 (view UCSC Genome Browser custom track) |
| Alignm length: | 905 |
| Alignm identity: | 623 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 864, 870 |
| Conread position: | 3-753 |
| Cow position: | chrX:25309835-25310585 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 445 |
| Conread position: | 4-181 |
| Cow position: | chrX:29045630-29045452 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 4-907 |
| Cow position: | chrX:25325725-25324822 (view UCSC Genome Browser custom track) |
| Alignm length: | 909 |
| Alignm identity: | 599 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 120 |
| Conread position: | 19-339 |
| Cow position: | chrX:14181261-14180941 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-496 |
| Cow position: | chrX:29045128-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-577 |
| Cow position: | chrX:29045212-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 342 |
| Conread position: | 23-590 |
| Cow position: | chrX:14181509-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 345 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 183, 151 |
| Conread position: | 27-907 |
| Cow position: | chrX:25325786-25324906 (view UCSC Genome Browser custom track) |
| Alignm length: | 883 |
| Alignm identity: | 600 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 144 |
| Conread position: | 30-664 |
| Cow position: | chrX:29045288-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 142 |
| Conread position: | 36-345 |
| Cow position: | chrX:29045681-29045372 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 242, 229 |
| Conread position: | 36-902 |
| Cow position: | chrX:25309700-25310566 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 582 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 413 |
| Conread position: | 37-902 |
| Cow position: | chrX:25325104-25324239 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 576 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 135 |
| Conread position: | 37-907 |
| Cow position: | chrX:25325272-25324402 (view UCSC Genome Browser custom track) |
| Alignm length: | 874 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 170 |
| Conread position: | 43-347 |
| Cow position: | chrX:29045758-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 228, 222 |
| Conread position: | 44-347 |
| Cow position: | chrX:12627759-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 49-769 |
| Cow position: | chrX:12627346-12628064 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 436 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 44, 63 |
| Conread position: | 54-907 |
| Cow position: | chrX:29045831-29044999 (view UCSC Genome Browser custom track) |
| Alignm length: | 860 |
| Alignm identity: | 551 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 58-907 |
| Cow position: | chrX:25325587-25324738 (view UCSC Genome Browser custom track) |
| Alignm length: | 852 |
| Alignm identity: | 586 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 477, 484 |
| Conread position: | 61-758 |
| Cow position: | chrX:14181639-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 220 |
| Conread position: | 66-745 |
| Cow position: | chrX:29045336-29044657 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 141 |
| Conread position: | 80-907 |
| Cow position: | chrX:25309660-25310487 (view UCSC Genome Browser custom track) |
| Alignm length: | 833 |
| Alignm identity: | 536 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 118-507 |
| Cow position: | chrX:14181330-14180941 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 80 |
| Conread position: | 121-851 |
| Cow position: | chrX:12627334-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 122-832 |
| Cow position: | chrX:29045361-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 164-892 |
| Cow position: | chrX:13826926-13826198 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 280 |
| Conread position: | 205-891 |
| Cow position: | chrX:14181579-14180893 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 409 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 146, 162 |
| Conread position: | 216-902 |
| Cow position: | chrX:12627345-12628029 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 216-902 |
| Cow position: | chrX:29045837-29045172 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 315 |
| Conread position: | 229-897 |
| Cow position: | chrX:14181639-14180971 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 223 |
| Conread position: | 235-899 |
| Cow position: | chrX:12627280-12627942 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 124 |
| Conread position: | 248-895 |
| Cow position: | chrX:13826926-13826279 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 114 |
| Conread position: | 305-729 |
| Cow position: | chrX:29045832-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 228 |
| Conread position: | 309-907 |
| Cow position: | chrX:13826949-13826351 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 436-902 |
| Cow position: | chrX:25325881-25325415 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 50, 43 |
| Conread position: | 636-904 |
| Cow position: | chrX:29045837-29045569 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 670-912 |
| Cow position: | chrX:13826924-13826682 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 107, 115 |
Show alignments to all cow chromosomes.