Cow genome map
| Conread name: | Ss1.1-rjej10b_e8.5 |
| Conread position: | 683-842 |
| Cow position: | chrX:917860-917704 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 699-849 |
| Cow position: | chrX:27395470-27395320 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 12, 127 |
| Conread position: | 709-849 |
| Cow position: | chrX:16324713-16324574 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 710-849 |
| Cow position: | chrX:17663377-17663239 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 8, 115 |
| Conread position: | 715-851 |
| Cow position: | chrX:3154707-3154575 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 716-807 |
| Cow position: | chrX:10866318-10866227 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 79 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 716-811 |
| Cow position: | chrX:21662644-21662740 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 716-815 |
| Cow position: | chrX:32128445-32128346 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 716-823 |
| Cow position: | chrX:35288203-35288310 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 716-830 |
| Cow position: | chrX:38642569-38642683 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 716-831 |
| Cow position: | chrX:10960207-10960322 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 716-841 |
| Cow position: | chrX:13266281-13266159 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 716-842 |
| Cow position: | chrX:38999445-38999569 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 716-842 |
| Cow position: | chrX:39546431-39546307 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 108 |
| Conread position: | 716-849 |
| Cow position: | chrX:12249350-12249474 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 716-849 |
| Cow position: | chrX:40452671-40452540 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 716-849 |
| Cow position: | chrX:41067382-41067512 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 716-849 |
| Cow position: | chrX:42281946-42282077 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 107 |
| Conread position: | 716-849 |
| Cow position: | chrX:42499525-42499395 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 716-863 |
| Cow position: | chrX:1499137-1499281 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 716-863 |
| Cow position: | chrX:39939205-39939061 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 718-849 |
| Cow position: | chrX:37831922-37831794 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 82, 26 |
| Conread position: | 719-849 |
| Cow position: | chrX:6695798-6695671 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 720-835 |
| Cow position: | chrX:20709586-20709698 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 723-849 |
| Cow position: | chrX:20801328-20801450 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 724-849 |
| Cow position: | chrX:9854830-9854952 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 729-842 |
| Cow position: | chrX:11073649-11073539 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 729-849 |
| Cow position: | chrX:28847320-28847203 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
Show alignments to all cow chromosomes.