Cow genome map
| Conread name: | Ss1.1-rjej28b_h9.5.5 |
| Conread position: | 1-198 |
| Cow position: | chr3:42396592-42396789 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-201 |
| Cow position: | chr3:42340272-42340472 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 204-432 |
| Cow position: | chr3:42400397-42400625 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 207-425 |
| Cow position: | chr3:42341026-42341244 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 424-608 |
| Cow position: | chr3:42404963-42405148 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 606-714 |
| Cow position: | chr3:42406422-42406530 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 707-932 |
| Cow position: | chr3:42349844-42350069 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 165, 154 |
| Conread position: | 712-932 |
| Cow position: | chr3:42407224-42407444 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 929-1200 |
| Cow position: | chr3:42351139-42351404 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 929-1200 |
| Cow position: | chr3:42408357-42408628 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 934-1200 |
| Cow position: | chr3:42484952-42485221 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 934-1200 |
| Cow position: | chr3:42590138-42590407 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 1197-1370 |
| Cow position: | chr3:42485812-42485985 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1197-1370 |
| Cow position: | chr3:42590967-42591140 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1197-1373 |
| Cow position: | chr3:42411704-42411880 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1345-1614 |
| Cow position: | chr3:42412765-42413037 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 1369-1614 |
| Cow position: | chr3:42353964-42354209 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 194, 46 |
| Conread position: | 1602-1900 |
| Cow position: | chr3:42355002-42355300 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 271, 255 |
| Conread position: | 1602-2220 |
| Cow position: | chr3:42413363-42413980 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 249 |
| Conread position: | 1702-2126 |
| Cow position: | chr3:42500549-42500944 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 18 |
Show alignments to all cow chromosomes.