Cow genome map

Conread name: Ss1.1-rlin03_j17.5

Conread position: 230-566
Cow position: chr12:22203461-22203119 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 213
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 177, 130

Conread position: 256-595
Cow position: chr12:35548883-35548542 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 11

Conread position: 261-510
Cow position: chr12:21224208-21223961 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 46, 18

Conread position: 261-568
Cow position: chr12:20460969-20460663 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 18

Conread position: 261-592
Cow position: chr12:25261260-25260928 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 18

Conread position: 261-595
Cow position: chr12:25267084-25266747 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 18

Conread position: 262-441
Cow position: chr12:8844246-8844067 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 158, 17

Conread position: 262-441
Cow position: chr12:15775658-15775837 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 158, 17

Conread position: 262-452
Cow position: chr12:31332071-31331882 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 158, 17

Conread position: 262-474
Cow position: chr12:15949556-15949339 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 262-484
Cow position: chr12:14213917-14213693 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 158, 17

Conread position: 262-505
Cow position: chr12:27930500-27930258 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 158, 17

Conread position: 262-530
Cow position: chr12:24030691-24030420 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 158, 17

Conread position: 262-582
Cow position: chr12:8143359-8143061 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 216
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 161, 17

Conread position: 262-585
Cow position: chr12:6549162-6549474 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 222
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 124, 17

Conread position: 262-585
Cow position: chr12:30685998-30686320 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-588
Cow position: chr12:28835071-28834744 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 19

Conread position: 262-592
Cow position: chr12:3179626-3179955 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 262-592
Cow position: chr12:8675821-8675486 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 238
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr12:12755905-12755572 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr12:21200999-21201331 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 17

Conread position: 262-592
Cow position: chr12:22571102-22571430 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr12:27853705-27853364 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 17

Conread position: 262-593
Cow position: chr12:41594288-41594632 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 233
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 90, 18

Conread position: 262-595
Cow position: chr12:1404523-1404858 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 262-595
Cow position: chr12:3363196-3363531 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr12:20882374-20882687 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 221
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 175, 17

Conread position: 262-595
Cow position: chr12:21252327-21251993 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 235
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 97, 17

Conread position: 262-595
Cow position: chr12:23139065-23138734 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 17

Conread position: 262-595
Cow position: chr12:23160634-23160312 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 17

Conread position: 262-595
Cow position: chr12:24979938-24980271 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 262-595
Cow position: chr12:24993717-24993381 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr12:32655809-32656141 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 262-595
Cow position: chr12:33926269-33925933 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr12:35633250-35632930 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 77, 16

Conread position: 262-595
Cow position: chr12:36212506-36212843 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 17

Conread position: 262-595
Cow position: chr12:42605922-42605590 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-600
Cow position: chr12:251585-251248 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 263-589
Cow position: chr12:28764775-28764450 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 16

Conread position: 263-593
Cow position: chr12:8137699-8137384 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 317, 16

Conread position: 265-508
Cow position: chr12:6442969-6442726 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 176
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 157, 14

Conread position: 265-559
Cow position: chr12:29445986-29446273 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 192
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 273, 8

Conread position: 265-591
Cow position: chr12:3718017-3717688 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 265-591
Cow position: chr12:24432632-24432310 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 37, 14

Conread position: 265-592
Cow position: chr12:1775667-1775332 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 227
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 106, 15

Conread position: 265-593
Cow position: chr12:21129296-21129622 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 158, 14

Conread position: 265-595
Cow position: chr12:22747472-22747800 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 265-595
Cow position: chr12:34175611-34175943 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 265-595
Cow position: chr12:37561265-37561594 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 265-600
Cow position: chr12:2284266-2284594 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 230
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 155, 14

Conread position: 266-511
Cow position: chr12:19872543-19872785 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 154, 13

Conread position: 266-586
Cow position: chr12:4784427-4784115 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 213
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 85, 14

Conread position: 266-592
Cow position: chr12:11100505-11100831 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 13

Conread position: 266-592
Cow position: chr12:18467049-18467376 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 13

Conread position: 266-595
Cow position: chr12:21430217-21430549 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 13

Conread position: 267-590
Cow position: chr12:757715-758030 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 179, 12

Conread position: 276-588
Cow position: chr12:22565333-22565646 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 195

Conread position: 276-592
Cow position: chr12:6480117-6479813 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 225
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 144, 64

Conread position: 277-585
Cow position: chr12:12294797-12295115 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 108

Conread position: 277-590
Cow position: chr12:1407100-1407417 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 220
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 138, 0

Conread position: 277-592
Cow position: chr12:42857259-42856944 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 149, 100

Conread position: 277-593
Cow position: chr12:41464493-41464198 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 212
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 167, 63

Conread position: 277-595
Cow position: chr12:17717565-17717887 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 278-593
Cow position: chr12:22593014-22593342 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 71, 0

Conread position: 278-595
Cow position: chr12:21210940-21211261 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 88

Conread position: 280-564
Cow position: chr12:19728155-19727878 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 68

Conread position: 280-592
Cow position: chr12:33121667-33121964 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 218
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 168, 37

Conread position: 283-592
Cow position: chr12:18584948-18585259 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 51

Conread position: 285-581
Cow position: chr12:36573768-36573477 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 136, 232

Conread position: 286-593
Cow position: chr12:21091459-21091154 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 129, 83

Conread position: 286-596
Cow position: chr12:8890768-8890458 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 134, 275

Conread position: 287-590
Cow position: chr12:30140713-30141005 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 133, 106

Conread position: 289-405
Cow position: chr12:16818453-16818569 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 293-595
Cow position: chr12:38892642-38892948 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 0

Conread position: 301-553
Cow position: chr12:35300610-35300356 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 51

Conread position: 305-593
Cow position: chr12:21483697-21483984 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 193
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 29, 183

Conread position: 309-464
Cow position: chr12:7868452-7868609 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 82

Conread position: 311-593
Cow position: chr12:21944421-21944703 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 187
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 116, 29

Conread position: 312-595
Cow position: chr12:12929584-12929297 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 114, 0

Conread position: 316-571
Cow position: chr12:14854890-14854625 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 178
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 48

Conread position: 335-580
Cow position: chr12:35262877-35263112 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 19, 0

Conread position: 336-595
Cow position: chr12:1056771-1057041 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 343-592
Cow position: chr12:4933513-4933760 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 63, 150

Conread position: 371-593
Cow position: chr12:17968149-17968372 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 35

Conread position: 374-595
Cow position: chr12:8343659-8343437 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 34

Conread position: 379-591
Cow position: chr12:26821963-26822171 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 96

Conread position: 385-595
Cow position: chr12:34964926-34964712 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 388-593
Cow position: chr12:6078728-6078524 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 35, 132

Conread position: 419-582
Cow position: chr12:20995350-20995185 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 438-595
Cow position: chr12:22518629-22518471 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 139, 0

Conread position: 439-595
Cow position: chr12:41239601-41239445 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 141, 36

Conread position: 455-595
Cow position: chr12:536821-536962 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 0

Show alignments to all cow chromosomes.