Cow genome map

Conread name: Ss1.1-rlin03_j17.5

Conread position: 261-595
Cow position: chr19:24673135-24672803 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 242
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 84, 18

Conread position: 262-415
Cow position: chr19:29086020-29086173 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 108, 18

Conread position: 262-421
Cow position: chr19:5899147-5898992 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 262-453
Cow position: chr19:2271757-2271567 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 158, 17

Conread position: 262-480
Cow position: chr19:774979-775199 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 157, 17

Conread position: 262-536
Cow position: chr19:21338485-21338209 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-549
Cow position: chr19:42297768-42297478 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 115, 17

Conread position: 262-556
Cow position: chr19:33649829-33649531 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 32, 18

Conread position: 262-587
Cow position: chr19:35382790-35382469 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 262-589
Cow position: chr19:3088962-3088634 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-589
Cow position: chr19:44032829-44033151 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 237
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 161, 18

Conread position: 262-592
Cow position: chr19:206863-207195 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr19:4387952-4388271 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr19:5731871-5732193 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 17

Conread position: 262-592
Cow position: chr19:7490459-7490789 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr19:12775481-12775815 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr19:28579332-28579007 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 17

Conread position: 262-592
Cow position: chr19:33943929-33944256 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr19:39183181-39182848 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 8

Conread position: 262-592
Cow position: chr19:39392870-39393201 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr19:40834903-40834573 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 17

Conread position: 262-592
Cow position: chr19:40850128-40849796 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr19:40885386-40885055 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 165, 17

Conread position: 262-593
Cow position: chr19:257672-258002 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 221
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 146, 17

Conread position: 262-593
Cow position: chr19:1584824-1585159 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 17

Conread position: 262-593
Cow position: chr19:30560533-30560857 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 17

Conread position: 262-593
Cow position: chr19:44758430-44758105 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 158, 17

Conread position: 262-594
Cow position: chr19:13063790-13064118 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 211
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 316, 17

Conread position: 262-595
Cow position: chr19:165764-165435 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr19:748901-748575 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 160, 17

Conread position: 262-595
Cow position: chr19:7344392-7344725 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr19:7481579-7481243 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 17

Conread position: 262-595
Cow position: chr19:15445502-15445171 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-595
Cow position: chr19:16318251-16317916 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr19:20610690-20611026 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 17

Conread position: 262-595
Cow position: chr19:22511415-22511086 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 262-595
Cow position: chr19:43147032-43147368 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 262-595
Cow position: chr19:52149176-52148856 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 164, 17

Conread position: 262-596
Cow position: chr19:28404210-28403875 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 215
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 159, 17

Conread position: 262-600
Cow position: chr19:20107083-20107440 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 252
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 72, 18

Conread position: 263-595
Cow position: chr19:36149006-36149355 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 17

Conread position: 265-400
Cow position: chr19:36418331-36418465 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 265-511
Cow position: chr19:37683302-37683540 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 157, 14

Conread position: 265-539
Cow position: chr19:24727315-24727043 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 190
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 172, 15

Conread position: 265-585
Cow position: chr19:9705820-9705504 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 155, 14

Conread position: 265-592
Cow position: chr19:436976-436647 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 14

Conread position: 265-593
Cow position: chr19:39666187-39665859 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 14

Conread position: 265-593
Cow position: chr19:42581923-42581596 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 238
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 158, 14

Conread position: 266-493
Cow position: chr19:19177064-19176839 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 67, 13

Conread position: 266-587
Cow position: chr19:41787351-41787038 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 216
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 226, 118

Conread position: 266-593
Cow position: chr19:38810793-38811100 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 157, 13

Conread position: 266-600
Cow position: chr19:5248426-5248092 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 230
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 158, 269

Conread position: 267-421
Cow position: chr19:27608243-27608093 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 12, 0

Conread position: 267-595
Cow position: chr19:38559921-38559594 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 12

Conread position: 267-596
Cow position: chr19:32138557-32138226 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 236

Conread position: 268-590
Cow position: chr19:4553241-4552934 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 222
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 312, 11

Conread position: 268-593
Cow position: chr19:32708539-32708864 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 13

Conread position: 271-595
Cow position: chr19:28718887-28719208 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 84

Conread position: 276-502
Cow position: chr19:5717266-5717042 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 144, 34

Conread position: 276-595
Cow position: chr19:40716-41027 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 224
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 160, 84

Conread position: 277-561
Cow position: chr19:3142007-3142288 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 189
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 144, 91

Conread position: 277-592
Cow position: chr19:33875788-33876106 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 83

Conread position: 278-564
Cow position: chr19:23865795-23865508 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 9, 52

Conread position: 278-595
Cow position: chr19:3586766-3586448 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 146, 62

Conread position: 278-595
Cow position: chr19:28595758-28596061 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 266, 99

Conread position: 279-585
Cow position: chr19:34657144-34656855 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 60, 0

Conread position: 279-592
Cow position: chr19:33905445-33905751 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 141, 178

Conread position: 279-593
Cow position: chr19:159490-159163 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 45, 0

Conread position: 279-595
Cow position: chr19:5782141-5781836 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 223
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 158, 108

Conread position: 282-591
Cow position: chr19:24437850-24437540 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 220
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 137, 58

Conread position: 285-511
Cow position: chr19:4302642-4302878 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 135, 40

Conread position: 285-584
Cow position: chr19:2587574-2587884 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 95, 47

Conread position: 285-590
Cow position: chr19:28795947-28795641 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 7, 98

Conread position: 287-591
Cow position: chr19:1586871-1586565 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 133, 120

Conread position: 290-592
Cow position: chr19:2736175-2736480 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 200
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 132, 32

Conread position: 298-593
Cow position: chr19:25378329-25378628 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 212
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 41, 114

Conread position: 303-594
Cow position: chr19:36999949-36999672 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 117, 141

Conread position: 308-571
Cow position: chr19:47098517-47098800 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 58

Conread position: 315-546
Cow position: chr19:30475135-30474903 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 107, 25

Conread position: 315-593
Cow position: chr19:3402583-3402308 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 193
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 123, 16

Conread position: 317-585
Cow position: chr19:18447352-18447617 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 103, 67

Conread position: 335-593
Cow position: chr19:39345504-39345250 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 92, 16

Conread position: 351-595
Cow position: chr19:28328824-28329053 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 75, 162

Conread position: 356-566
Cow position: chr19:19388271-19388480 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 183

Conread position: 359-592
Cow position: chr19:18359849-18359614 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 23, 61

Conread position: 395-595
Cow position: chr19:475008-474804 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 395-595
Cow position: chr19:5901061-5901262 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 97

Conread position: 397-592
Cow position: chr19:39749720-39749915 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 159

Conread position: 398-595
Cow position: chr19:55165564-55165363 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 399-588
Cow position: chr19:28741386-28741194 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 404-595
Cow position: chr19:22390959-22390764 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 416-592
Cow position: chr19:890685-890507 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 430-596
Cow position: chr19:55694182-55694014 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 14, 93

Conread position: 434-588
Cow position: chr19:35612295-35612141 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 115, 126

Conread position: 459-592
Cow position: chr19:2270742-2270608 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 121, 0

Show alignments to all cow chromosomes.