Cow genome map

Conread name: Ss1.1-rlin03_j17.5

Conread position: 261-546
Cow position: chr20:22396664-22396396 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 195
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 117, 18

Conread position: 261-592
Cow position: chr20:23801210-23801544 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 18

Conread position: 261-592
Cow position: chr20:23805558-23805225 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 18

Conread position: 261-593
Cow position: chr20:16177442-16177110 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 230
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 101, 74

Conread position: 262-463
Cow position: chr20:15602442-15602239 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 118, 17

Conread position: 262-487
Cow position: chr20:6014566-6014327 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 76, 17

Conread position: 262-495
Cow position: chr20:28280135-28280367 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 113, 17

Conread position: 262-508
Cow position: chr20:39881661-39881909 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 46, 17

Conread position: 262-511
Cow position: chr20:28561592-28561343 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 157, 17

Conread position: 262-511
Cow position: chr20:32155021-32154766 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 180
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 77, 17

Conread position: 262-531
Cow position: chr20:29757958-29757687 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 158, 17

Conread position: 262-565
Cow position: chr20:23899708-23900012 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-586
Cow position: chr20:23467344-23467018 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr20:5537252-5537581 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 175, 19

Conread position: 262-592
Cow position: chr20:7598532-7598210 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr20:8351013-8350693 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 161, 10

Conread position: 262-592
Cow position: chr20:10867465-10867132 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 17

Conread position: 262-592
Cow position: chr20:10922599-10922266 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 19

Conread position: 262-592
Cow position: chr20:12436074-12435744 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr20:13765217-13765549 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr20:15294299-15294620 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr20:27345626-27345314 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 322, 18

Conread position: 262-592
Cow position: chr20:27875804-27876134 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 10

Conread position: 262-592
Cow position: chr20:28163368-28163697 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 262-592
Cow position: chr20:28293649-28293971 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 33, 17

Conread position: 262-592
Cow position: chr20:30687894-30688225 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 143, 17

Conread position: 262-593
Cow position: chr20:19424377-19424690 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 230
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 176, 17

Conread position: 262-594
Cow position: chr20:28959234-28958904 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 236
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 170, 18

Conread position: 262-595
Cow position: chr20:752467-752803 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr20:825102-825435 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 234
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr20:8971559-8971236 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 315, 17

Conread position: 262-595
Cow position: chr20:12046835-12047170 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 17

Conread position: 262-595
Cow position: chr20:18093865-18093531 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr20:19440238-19440570 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr20:21718885-21719224 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 17

Conread position: 262-595
Cow position: chr20:28445024-28444692 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 17

Conread position: 262-595
Cow position: chr20:30385905-30385593 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 176, 17

Conread position: 262-595
Cow position: chr20:30430594-30430927 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-595
Cow position: chr20:34459984-34459653 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 263-595
Cow position: chr20:30578212-30578543 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 16

Conread position: 265-431
Cow position: chr20:21916969-21917135 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 155, 14

Conread position: 265-490
Cow position: chr20:22696698-22696481 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 155, 14

Conread position: 265-585
Cow position: chr20:7513663-7513987 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 14

Conread position: 265-592
Cow position: chr20:20752512-20752193 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 158, 16

Conread position: 265-592
Cow position: chr20:25846291-25845968 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 14

Conread position: 265-593
Cow position: chr20:10495322-10495641 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 124, 14

Conread position: 265-593
Cow position: chr20:21396854-21397176 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 158, 14

Conread position: 265-593
Cow position: chr20:25332612-25332289 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 265-595
Cow position: chr20:35144557-35144228 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 155, 14

Conread position: 266-441
Cow position: chr20:19342138-19342313 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 154, 13

Conread position: 266-582
Cow position: chr20:13500628-13500937 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 218
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 77, 13

Conread position: 266-589
Cow position: chr20:13654952-13654641 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 137, 15

Conread position: 266-590
Cow position: chr20:14868041-14867732 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 172, 13

Conread position: 266-591
Cow position: chr20:35019249-35019573 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 157, 13

Conread position: 266-595
Cow position: chr20:5076331-5076656 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 13

Conread position: 267-593
Cow position: chr20:3307181-3307501 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 12

Conread position: 267-595
Cow position: chr20:24541750-24542081 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 12

Conread position: 274-593
Cow position: chr20:6475867-6476184 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 223
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 146, 57

Conread position: 276-522
Cow position: chr20:14748278-14748516 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 173
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 140, 106

Conread position: 276-595
Cow position: chr20:20440617-20440296 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 277-592
Cow position: chr20:17659409-17659094 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 92

Conread position: 277-593
Cow position: chr20:35160244-35159927 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 83

Conread position: 277-595
Cow position: chr20:870668-870351 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 230
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 136, 20

Conread position: 277-595
Cow position: chr20:18355564-18355886 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 277-595
Cow position: chr20:31747630-31747937 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 214
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 243, 69

Conread position: 278-588
Cow position: chr20:15095563-15095256 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 148, 76

Conread position: 279-593
Cow position: chr20:35844974-35844660 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 141, 125

Conread position: 280-581
Cow position: chr20:12548069-12547771 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 192
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 149, 117

Conread position: 280-593
Cow position: chr20:28101665-28101976 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 205, 97

Conread position: 282-511
Cow position: chr20:33598772-33599004 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 126, 139

Conread position: 288-502
Cow position: chr20:35131235-35131461 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 135, 0

Conread position: 288-592
Cow position: chr20:12568966-12568659 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 83

Conread position: 288-595
Cow position: chr20:20185103-20185402 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 47

Conread position: 289-559
Cow position: chr20:20388957-20388687 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 68

Conread position: 293-421
Cow position: chr20:8200705-8200577 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 293-593
Cow position: chr20:19844144-19844438 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 133, 47

Conread position: 297-526
Cow position: chr20:32350906-32351132 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 123, 170

Conread position: 299-600
Cow position: chr20:37582443-37582733 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 211
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 281, 28

Conread position: 312-503
Cow position: chr20:20491720-20491914 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 111, 138

Conread position: 322-595
Cow position: chr20:5226164-5225899 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 196
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 101

Conread position: 324-595
Cow position: chr20:6136608-6136334 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 96, 177

Conread position: 324-595
Cow position: chr20:16560161-16559886 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 102, 0

Conread position: 335-600
Cow position: chr20:30461656-30461389 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 86, 182

Conread position: 336-595
Cow position: chr20:16105827-16106087 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 184
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 90, 41

Conread position: 336-595
Cow position: chr20:39233622-39233886 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 17, 0

Conread position: 340-593
Cow position: chr20:29313216-29313476 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 80, 201

Conread position: 361-581
Cow position: chr20:5936575-5936353 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 62, 119

Conread position: 363-600
Cow position: chr20:4736895-4736662 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 92

Conread position: 367-585
Cow position: chr20:19365893-19365673 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 145
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 395-595
Cow position: chr20:3809318-3809114 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 0

Conread position: 395-595
Cow position: chr20:24568818-24568614 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 402-595
Cow position: chr20:29053801-29053996 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 21, 102

Conread position: 410-593
Cow position: chr20:14757789-14757602 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 106

Conread position: 440-595
Cow position: chr20:8200716-8200872 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 140, 0

Conread position: 449-596
Cow position: chr20:11902695-11902548 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 131, 31

Conread position: 451-595
Cow position: chr20:38956648-38956793 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 126, 0

Conread position: 452-593
Cow position: chr20:2180240-2180098 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 128, 0

Show alignments to all cow chromosomes.