Cow genome map

Conread name: Ss1.1-rlin03_j17.5

Conread position: 258-595
Cow position: chr21:29000375-29000695 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 261-511
Cow position: chr21:45907262-45907017 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 162, 12

Conread position: 261-593
Cow position: chr21:2538718-2538385 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 159, 18

Conread position: 262-380
Cow position: chr21:19613193-19613310 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 262-409
Cow position: chr21:19352357-19352503 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 262-411
Cow position: chr21:25126234-25126381 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 262-413
Cow position: chr21:11508043-11508192 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 62, 17

Conread position: 262-421
Cow position: chr21:4899744-4899585 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 17

Conread position: 262-436
Cow position: chr21:7038781-7038955 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 158, 17

Conread position: 262-453
Cow position: chr21:29949531-29949340 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 158, 17

Conread position: 262-479
Cow position: chr21:47976268-47976487 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 116, 17

Conread position: 262-499
Cow position: chr21:37123924-37123687 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 158, 17

Conread position: 262-511
Cow position: chr21:9894580-9894832 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 170
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 17

Conread position: 262-527
Cow position: chr21:27610310-27610051 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 158, 17

Conread position: 262-547
Cow position: chr21:15248249-15247962 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 17

Conread position: 262-548
Cow position: chr21:38242439-38242152 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 156, 17

Conread position: 262-552
Cow position: chr21:36978471-36978185 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 158, 17

Conread position: 262-568
Cow position: chr21:39427508-39427816 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 262-581
Cow position: chr21:49092006-49091686 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 147, 17

Conread position: 262-582
Cow position: chr21:21171856-21171552 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 212
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 262-582
Cow position: chr21:28853414-28853097 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 232
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 96, 17

Conread position: 262-589
Cow position: chr21:4091769-4092095 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-589
Cow position: chr21:30352379-30352719 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 241
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 157, 26

Conread position: 262-590
Cow position: chr21:36981081-36981394 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 196, 17

Conread position: 262-590
Cow position: chr21:49297256-49297588 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 32, 17

Conread position: 262-591
Cow position: chr21:21025908-21026246 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 19

Conread position: 262-591
Cow position: chr21:31251441-31251759 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 220
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 161, 24

Conread position: 262-591
Cow position: chr21:31513885-31513553 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 17

Conread position: 262-592
Cow position: chr21:22943048-22943381 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 17

Conread position: 262-592
Cow position: chr21:26401318-26401002 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 231
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 318, 17

Conread position: 262-592
Cow position: chr21:27285881-27286209 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr21:30596657-30596325 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr21:44763524-44763197 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-593
Cow position: chr21:2418638-2418963 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 158, 17

Conread position: 262-593
Cow position: chr21:2665707-2665374 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 146, 17

Conread position: 262-593
Cow position: chr21:3805359-3805686 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 227
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 158, 17

Conread position: 262-593
Cow position: chr21:4078486-4078813 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 17

Conread position: 262-593
Cow position: chr21:21051154-21051494 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 98, 18

Conread position: 262-593
Cow position: chr21:22751037-22750686 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 237
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 90, 17

Conread position: 262-593
Cow position: chr21:26700234-26699900 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 229
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 130, 17

Conread position: 262-593
Cow position: chr21:26739605-26739278 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 218
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 164, 11

Conread position: 262-593
Cow position: chr21:27068529-27068195 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-593
Cow position: chr21:28614750-28615083 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 158, 17

Conread position: 262-593
Cow position: chr21:32831789-32831480 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 235
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 320, 17

Conread position: 262-593
Cow position: chr21:46969248-46968917 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 129, 18

Conread position: 262-595
Cow position: chr21:1076710-1077045 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 219
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 104, 5

Conread position: 262-595
Cow position: chr21:4186380-4186715 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 238
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 146, 17

Conread position: 262-595
Cow position: chr21:4738107-4738428 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 228
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 17

Conread position: 262-595
Cow position: chr21:5937896-5938229 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 72, 17

Conread position: 262-595
Cow position: chr21:6967028-6966705 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr21:7063238-7062902 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr21:11291121-11291456 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr21:26238472-26238786 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 229
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 318, 18

Conread position: 262-595
Cow position: chr21:27149124-27148786 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr21:27621065-27620730 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 262-595
Cow position: chr21:29002893-29002555 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 80, 17

Conread position: 262-595
Cow position: chr21:32397619-32397283 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr21:34902943-34902619 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 164, 17

Conread position: 262-595
Cow position: chr21:37373658-37373992 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr21:38019668-38019994 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 228
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 318, 11

Conread position: 262-595
Cow position: chr21:39225624-39225293 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr21:41797291-41796955 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 19

Conread position: 262-599
Cow position: chr21:650465-650115 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 17

Conread position: 262-600
Cow position: chr21:41652-41995 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 160, 17

Conread position: 263-592
Cow position: chr21:4596171-4595859 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 161, 18

Conread position: 265-413
Cow position: chr21:40269234-40269090 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 265-421
Cow position: chr21:48487200-48487354 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 265-502
Cow position: chr21:5011301-5011063 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 14

Conread position: 265-546
Cow position: chr21:16830828-16831097 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 185
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 155, 14

Conread position: 265-578
Cow position: chr21:22462630-22462944 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 219
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 161, 14

Conread position: 265-585
Cow position: chr21:13274111-13274430 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 223
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 19, 14

Conread position: 265-590
Cow position: chr21:47647771-47648097 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 14

Conread position: 265-592
Cow position: chr21:5019581-5019910 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 14

Conread position: 265-592
Cow position: chr21:7154771-7155096 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 155, 14

Conread position: 265-592
Cow position: chr21:10569132-10569458 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 155, 14

Conread position: 265-593
Cow position: chr21:4097101-4097420 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 229
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 156, 14

Conread position: 265-593
Cow position: chr21:34656394-34656726 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 69, 14

Conread position: 265-593
Cow position: chr21:37040179-37039854 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 225
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 158, 14

Conread position: 265-593
Cow position: chr21:48529983-48529656 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 7

Conread position: 265-595
Cow position: chr21:2513289-2513614 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 155, 7

Conread position: 265-595
Cow position: chr21:13285362-13285689 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 15

Conread position: 265-595
Cow position: chr21:24083904-24083586 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 224
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 155, 14

Conread position: 265-595
Cow position: chr21:36375423-36375756 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 7

Conread position: 265-595
Cow position: chr21:42916242-42916559 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 156, 14

Conread position: 265-596
Cow position: chr21:39093213-39093542 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 226
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 87, 14

Conread position: 266-582
Cow position: chr21:21622714-21623032 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 212
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 86, 9

Conread position: 266-590
Cow position: chr21:20742226-20741905 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 160, 13

Conread position: 266-590
Cow position: chr21:24647262-24647578 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 225
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 14, 0

Conread position: 266-592
Cow position: chr21:995990-995670 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 226
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 154, 13

Conread position: 266-592
Cow position: chr21:28987579-28987889 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 222
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 77, 14

Conread position: 266-593
Cow position: chr21:31973526-31973208 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 13

Conread position: 266-593
Cow position: chr21:46975623-46975309 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 230
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 155, 14

Conread position: 266-595
Cow position: chr21:26634721-26634391 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 13

Conread position: 268-569
Cow position: chr21:39080039-39079728 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 95, 12

Conread position: 268-591
Cow position: chr21:29255048-29254726 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 11

Conread position: 268-595
Cow position: chr21:44531636-44531962 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 269-587
Cow position: chr21:5631535-5631217 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 91

Conread position: 271-593
Cow position: chr21:24948553-24948873 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 56

Conread position: 276-406
Cow position: chr21:44254067-44254197 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 109
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 276-582
Cow position: chr21:4190783-4191077 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 179, 24

Conread position: 276-585
Cow position: chr21:3587598-3587303 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 201
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 69, 0

Conread position: 277-589
Cow position: chr21:4036698-4037009 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 9, 88

Conread position: 277-592
Cow position: chr21:2879378-2879063 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 100

Conread position: 277-592
Cow position: chr21:13112940-13112628 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 63

Conread position: 277-593
Cow position: chr21:28879266-28878951 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 219
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 99, 63

Conread position: 277-593
Cow position: chr21:34256144-34255828 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 226
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 145, 98

Conread position: 277-593
Cow position: chr21:47943401-47943713 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 145, 96

Conread position: 277-596
Cow position: chr21:4271071-4270749 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 214
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 30, 16

Conread position: 279-592
Cow position: chr21:24299073-24298763 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 219
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 141, 103

Conread position: 279-593
Cow position: chr21:1686697-1686385 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 220
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 133, 98

Conread position: 280-481
Cow position: chr21:34551699-34551498 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 80, 58

Conread position: 280-589
Cow position: chr21:4938108-4938416 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 167

Conread position: 280-592
Cow position: chr21:1194994-1195302 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 89

Conread position: 280-593
Cow position: chr21:47033756-47033451 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 140, 29

Conread position: 280-595
Cow position: chr21:27031700-27032006 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 137, 21

Conread position: 280-595
Cow position: chr21:46290846-46291147 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 210, 52

Conread position: 280-596
Cow position: chr21:2288526-2288855 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 221
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 111, 55

Conread position: 283-593
Cow position: chr21:34073136-34072811 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 99, 0

Conread position: 285-526
Cow position: chr21:3922675-3922918 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 135, 180

Conread position: 285-564
Cow position: chr21:35143451-35143171 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 9, 93

Conread position: 285-595
Cow position: chr21:10285621-10285929 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 209
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 282, 72

Conread position: 285-595
Cow position: chr21:35390675-35390377 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 233
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 152, 121

Conread position: 288-590
Cow position: chr21:32884970-32884676 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 130, 156

Conread position: 288-591
Cow position: chr21:32895740-32895450 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 203
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 130, 140

Conread position: 293-566
Cow position: chr21:7163519-7163243 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 148

Conread position: 293-596
Cow position: chr21:79544-79239 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 211
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 122, 157

Conread position: 294-568
Cow position: chr21:17913374-17913651 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 120, 37

Conread position: 296-595
Cow position: chr21:3171045-3171337 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 202
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 27, 120

Conread position: 298-592
Cow position: chr21:33318036-33317739 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 54

Conread position: 303-593
Cow position: chr21:46881625-46881921 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 218
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 43, 162

Conread position: 303-595
Cow position: chr21:15446109-15445804 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 41, 58

Conread position: 303-595
Cow position: chr21:21132305-21132018 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 51, 153

Conread position: 306-595
Cow position: chr21:4481771-4482064 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 145

Conread position: 307-596
Cow position: chr21:29909836-29909547 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 209

Conread position: 308-593
Cow position: chr21:21917960-21918249 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 83, 0

Conread position: 308-595
Cow position: chr21:4717417-4717705 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 73, 44

Conread position: 309-596
Cow position: chr21:17143154-17143446 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 313-596
Cow position: chr21:5594211-5594493 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 40

Conread position: 317-595
Cow position: chr21:40082051-40082319 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 109, 37

Conread position: 318-559
Cow position: chr21:33984812-33984567 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 0

Conread position: 324-592
Cow position: chr21:10852761-10853029 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 188
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 102, 36

Conread position: 335-559
Cow position: chr21:30162744-30162521 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 177, 108

Conread position: 340-591
Cow position: chr21:45455459-45455716 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 61

Conread position: 340-594
Cow position: chr21:44075781-44076047 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 177
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 341-560
Cow position: chr21:24694667-24694873 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 41

Conread position: 343-595
Cow position: chr21:19352351-19352095 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 83, 0

Conread position: 344-593
Cow position: chr21:15548356-15548108 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 168
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 75, 26

Conread position: 350-592
Cow position: chr21:148664-148912 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 173
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 0

Conread position: 362-592
Cow position: chr21:33256086-33256319 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 54, 11

Conread position: 365-556
Cow position: chr21:10519352-10519546 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 365-595
Cow position: chr21:15398442-15398208 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 61, 0

Conread position: 373-595
Cow position: chr21:25189184-25189409 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 395-595
Cow position: chr21:49086711-49086517 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 27, 49

Conread position: 403-595
Cow position: chr21:26455761-26455957 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 151

Conread position: 417-595
Cow position: chr21:5544062-5543882 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 21, 15

Conread position: 425-595
Cow position: chr21:19613332-19613505 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 438-592
Cow position: chr21:40268774-40268619 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 142, 0

Conread position: 446-595
Cow position: chr21:47976625-47976775 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 134, 0

Conread position: 449-587
Cow position: chr21:4566617-4566755 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 101
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 455-595
Cow position: chr21:11328273-11328129 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 461-594
Cow position: chr21:47375768-47375902 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 120, 0

Show alignments to all cow chromosomes.