Cow genome map

Conread name: Ss1.1-rlin03_j17.5

Conread position: 244-589
Cow position: chr23:1339541-1339194 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 238
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 24, 17

Conread position: 261-421
Cow position: chr23:7357486-7357642 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 262-380
Cow position: chr23:21792216-21792099 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 262-458
Cow position: chr23:1114627-1114434 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 158, 17

Conread position: 262-462
Cow position: chr23:7043663-7043463 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 175, 17

Conread position: 262-475
Cow position: chr23:6221894-6222102 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 173, 17

Conread position: 262-479
Cow position: chr23:41568429-41568647 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 157, 18

Conread position: 262-493
Cow position: chr23:37652167-37652399 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 157, 17

Conread position: 262-501
Cow position: chr23:528328-528569 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 158, 17

Conread position: 262-511
Cow position: chr23:19441610-19441363 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 17

Conread position: 262-571
Cow position: chr23:1958418-1958726 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-578
Cow position: chr23:8389970-8389652 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 218
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 189, 17

Conread position: 262-582
Cow position: chr23:11781049-11781370 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-582
Cow position: chr23:37129571-37129248 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 212
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 142, 18

Conread position: 262-587
Cow position: chr23:15527842-15528167 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-589
Cow position: chr23:15179323-15179648 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-591
Cow position: chr23:19491810-19492143 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-591
Cow position: chr23:29442838-29442513 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr23:1050273-1049940 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 86, 10

Conread position: 262-592
Cow position: chr23:2439053-2438721 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 161, 10

Conread position: 262-592
Cow position: chr23:3878827-3878506 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 233
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 171, 17

Conread position: 262-592
Cow position: chr23:4308925-4308591 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 262-592
Cow position: chr23:4890946-4891277 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 17

Conread position: 262-592
Cow position: chr23:14960695-14960365 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr23:16612540-16612214 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 17

Conread position: 262-592
Cow position: chr23:36029128-36028795 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-593
Cow position: chr23:2411377-2411050 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 158, 17

Conread position: 262-593
Cow position: chr23:5872305-5871977 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 160, 17

Conread position: 262-593
Cow position: chr23:30212574-30212257 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 176, 18

Conread position: 262-593
Cow position: chr23:32350505-32350176 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 158, 17

Conread position: 262-593
Cow position: chr23:35925767-35926081 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 227
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 190, 17

Conread position: 262-593
Cow position: chr23:41142598-41142927 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-594
Cow position: chr23:37200262-37199930 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-595
Cow position: chr23:608972-609314 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 118, 17

Conread position: 262-595
Cow position: chr23:943230-943566 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr23:2792506-2792176 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 164, 17

Conread position: 262-595
Cow position: chr23:3452482-3452170 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 135, 19

Conread position: 262-595
Cow position: chr23:3708660-3708990 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr23:4435913-4436244 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 235
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr23:7313840-7313504 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr23:15568671-15568334 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr23:25350609-25350945 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr23:28220962-28221295 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 262-595
Cow position: chr23:36097072-36097408 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-596
Cow position: chr23:19166053-19166384 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 164, 17

Conread position: 262-600
Cow position: chr23:38583212-38583538 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 239
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 158, 17

Conread position: 265-406
Cow position: chr23:1204797-1204939 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 15, 26

Conread position: 265-563
Cow position: chr23:11713603-11713303 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 7

Conread position: 265-582
Cow position: chr23:38579926-38580234 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 78, 14

Conread position: 265-591
Cow position: chr23:4515796-4516125 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 265-592
Cow position: chr23:2760164-2760485 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 16

Conread position: 265-592
Cow position: chr23:22145045-22144716 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 14

Conread position: 265-593
Cow position: chr23:32008761-32009082 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 161, 15

Conread position: 265-595
Cow position: chr23:2321687-2321356 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 265-595
Cow position: chr23:12079753-12080071 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 218
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 155, 16

Conread position: 266-464
Cow position: chr23:17845142-17845342 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 81, 13

Conread position: 266-511
Cow position: chr23:4266585-4266339 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 174, 13

Conread position: 266-593
Cow position: chr23:22169142-22169474 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 13

Conread position: 268-591
Cow position: chr23:14971686-14971363 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 233
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 141, 11

Conread position: 271-595
Cow position: chr23:30238534-30238851 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 179, 24

Conread position: 276-590
Cow position: chr23:21773647-21773329 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 276-595
Cow position: chr23:14264615-14264936 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 58

Conread position: 277-413
Cow position: chr23:4638342-4638206 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 277-421
Cow position: chr23:31165095-31165239 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 277-592
Cow position: chr23:5625299-5624993 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 225
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 254, 83

Conread position: 277-593
Cow position: chr23:16496980-16496682 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 216
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 161, 76

Conread position: 279-560
Cow position: chr23:18104736-18104456 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 186
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 144, 43

Conread position: 279-593
Cow position: chr23:20178295-20177991 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 141, 69

Conread position: 279-595
Cow position: chr23:8705131-8705449 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 68, 258

Conread position: 280-499
Cow position: chr23:11840604-11840820 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 106

Conread position: 280-595
Cow position: chr23:26418732-26419043 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 211
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 48

Conread position: 281-592
Cow position: chr23:2024810-2024499 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 79

Conread position: 283-592
Cow position: chr23:15504306-15504598 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 294, 65

Conread position: 285-549
Cow position: chr23:1327105-1326851 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 179
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 59, 8

Conread position: 285-596
Cow position: chr23:23283783-23284086 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 127, 47

Conread position: 287-595
Cow position: chr23:15659271-15658969 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 222
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 91, 115

Conread position: 293-574
Cow position: chr23:7493092-7492810 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 80, 72

Conread position: 293-592
Cow position: chr23:20153934-20153636 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 133, 77

Conread position: 293-593
Cow position: chr23:1799924-1800224 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 127, 77

Conread position: 293-595
Cow position: chr23:1021636-1021337 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 61, 16

Conread position: 296-593
Cow position: chr23:8289709-8290007 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 100, 75

Conread position: 307-487
Cow position: chr23:1249058-1249241 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 113, 0

Conread position: 311-595
Cow position: chr23:3145914-3146192 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 188
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 47

Conread position: 314-593
Cow position: chr23:644408-644132 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 43

Conread position: 319-595
Cow position: chr23:4080450-4080730 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 341-595
Cow position: chr23:7043472-7043219 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 172
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 79, 126

Conread position: 342-595
Cow position: chr23:19316816-19317073 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 84, 0

Conread position: 365-566
Cow position: chr23:4533244-4533039 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 365-589
Cow position: chr23:1003326-1003100 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 61, 176

Conread position: 371-592
Cow position: chr23:22989515-22989290 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 55, 0

Conread position: 378-598
Cow position: chr23:15350592-15350812 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 6

Conread position: 395-595
Cow position: chr23:3417944-3417742 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 112

Conread position: 435-592
Cow position: chr23:17350398-17350240 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 113
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 143, 0

Conread position: 438-595
Cow position: chr23:21009177-21009019 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 142, 0

Conread position: 446-592
Cow position: chr23:4637885-4637738 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 0

Show alignments to all cow chromosomes.