Cow genome map

Conread name: Ss1.1-rlin03_j17.5

Conread position: 261-582
Cow position: chr25:34344662-34344339 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 18

Conread position: 261-584
Cow position: chr25:33837462-33837786 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 157, 18

Conread position: 262-406
Cow position: chr25:14559193-14559050 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 262-413
Cow position: chr25:15617071-15617221 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 262-421
Cow position: chr25:9394247-9394412 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 17

Conread position: 262-441
Cow position: chr25:21966288-21966464 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 158, 17

Conread position: 262-453
Cow position: chr25:26354645-26354838 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 98, 18

Conread position: 262-464
Cow position: chr25:12940130-12939929 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 158, 17

Conread position: 262-511
Cow position: chr25:34673958-34674206 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 95, 18

Conread position: 262-555
Cow position: chr25:12700019-12700307 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 164, 17

Conread position: 262-566
Cow position: chr25:29359073-29359376 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-566
Cow position: chr25:34505772-34505467 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-590
Cow position: chr25:13352010-13352342 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr25:13784894-13785226 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr25:13959121-13959444 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr25:18887431-18887095 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 262-592
Cow position: chr25:24656392-24656059 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position: chr25:26281066-26281396 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 10

Conread position: 262-592
Cow position: chr25:26900580-26900910 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position: chr25:28861919-28862243 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 17

Conread position: 262-593
Cow position: chr25:11664713-11665047 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 17

Conread position: 262-593
Cow position: chr25:26929904-26930244 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 131, 17

Conread position: 262-593
Cow position: chr25:34667682-34667358 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 233
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 157, 17

Conread position: 262-594
Cow position: chr25:13793174-13792838 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 217
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 91, 17

Conread position: 262-595
Cow position: chr25:10135749-10136073 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 158, 47

Conread position: 262-595
Cow position: chr25:11042664-11042998 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr25:14537620-14537285 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 11

Conread position: 262-595
Cow position: chr25:18191344-18191012 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr25:19338274-19337945 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position: chr25:27020291-27019957 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 18

Conread position: 262-595
Cow position: chr25:29803735-29803402 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 164, 17

Conread position: 262-595
Cow position: chr25:32448193-32448529 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 262-595
Cow position: chr25:33261512-33261836 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 231
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 45, 17

Conread position: 262-595
Cow position: chr25:34510702-34510370 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-595
Cow position: chr25:35552731-35553067 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 17

Conread position: 265-589
Cow position: chr25:15283276-15283609 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 225
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 68, 15

Conread position: 265-589
Cow position: chr25:19409357-19409679 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 158, 14

Conread position: 265-590
Cow position: chr25:30129478-30129148 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 161, 14

Conread position: 265-592
Cow position: chr25:17656702-17657019 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 174, 14

Conread position: 265-593
Cow position: chr25:1077880-1078201 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 234
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 182, 14

Conread position: 265-593
Cow position: chr25:20773288-20772957 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 14

Conread position: 265-594
Cow position: chr25:38398499-38398830 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 14

Conread position: 265-595
Cow position: chr25:16448380-16448069 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 155, 14

Conread position: 265-595
Cow position: chr25:35562462-35562137 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 265-600
Cow position: chr25:18422770-18423102 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 174, 160

Conread position: 266-474
Cow position: chr25:23999768-23999559 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 171, 13

Conread position: 266-507
Cow position: chr25:40431254-40431028 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 194, 8

Conread position: 266-591
Cow position: chr25:19922863-19923189 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 13

Conread position: 266-593
Cow position: chr25:16924083-16923760 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 56, 13

Conread position: 266-595
Cow position: chr25:20099685-20100014 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 236
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 154, 15

Conread position: 266-595
Cow position: chr25:21546255-21546576 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 154, 14

Conread position: 267-500
Cow position: chr25:12173070-12172836 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 157
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 153, 13

Conread position: 268-593
Cow position: chr25:10635218-10634891 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 152, 11

Conread position: 268-595
Cow position: chr25:32578613-32578282 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 0

Conread position: 269-593
Cow position: chr25:18489068-18489397 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 223
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 75, 122

Conread position: 273-428
Cow position: chr25:14962851-14962701 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 22, 0

Conread position: 276-502
Cow position: chr25:40138744-40138519 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 152
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 161, 146

Conread position: 276-589
Cow position: chr25:24206354-24206045 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 212
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 162, 109

Conread position: 278-507
Cow position: chr25:13771215-13770980 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 0

Conread position: 278-551
Cow position: chr25:24215197-24214926 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 177
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 148, 27

Conread position: 278-590
Cow position: chr25:23846752-23846449 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 157, 20

Conread position: 279-592
Cow position: chr25:20631952-20632266 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 81

Conread position: 279-593
Cow position: chr25:41106502-41106824 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 135, 90

Conread position: 280-593
Cow position: chr25:17555404-17555095 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 142, 49

Conread position: 280-594
Cow position: chr25:18324516-18324213 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 224
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 100, 8

Conread position: 281-555
Cow position: chr25:12864436-12864703 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 174, 214

Conread position: 282-592
Cow position: chr25:34495077-34494773 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 138, 45

Conread position: 285-481
Cow position: chr25:11658467-11658666 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 45, 69

Conread position: 285-593
Cow position: chr25:11828646-11828351 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 152, 47

Conread position: 285-594
Cow position: chr25:19017322-19017015 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 138, 72

Conread position: 286-593
Cow position: chr25:23360251-23360564 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 218
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 201

Conread position: 288-592
Cow position: chr25:35627136-35626837 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 214
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 132, 43

Conread position: 295-573
Cow position: chr25:36814611-36814338 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 125, 71

Conread position: 295-595
Cow position: chr25:26455783-26456073 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 58

Conread position: 303-593
Cow position: chr25:12835485-12835192 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 307-589
Cow position: chr25:21146366-21146671 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 210
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 113, 0

Conread position: 335-595
Cow position: chr25:17586900-17586642 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 187
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 91, 25

Conread position: 335-595
Cow position: chr25:19106603-19106863 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 88, 41

Conread position: 352-595
Cow position: chr25:24732651-24732411 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 68, 56

Conread position: 363-592
Cow position: chr25:22150215-22150448 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 11, 174

Conread position: 365-595
Cow position: chr25:35648837-35648603 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 61, 0

Conread position: 365-595
Cow position: chr25:41407766-41407989 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 75, 18

Conread position: 371-592
Cow position: chr25:18179152-18179380 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 67, 35

Conread position: 390-592
Cow position: chr25:41099015-41098810 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 390-595
Cow position: chr25:24988730-24988939 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 73

Conread position: 397-592
Cow position: chr25:35756072-35755869 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 16, 0

Conread position: 430-593
Cow position: chr25:32898381-32898539 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 150, 25

Conread position: 436-595
Cow position: chr25:9645984-9646145 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 437-588
Cow position: chr25:9984321-9984470 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 7, 117

Conread position: 438-592
Cow position: chr25:35568663-35568509 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 142, 28

Conread position: 445-585
Cow position: chr25:17547263-17547127 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 105
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 461-595
Cow position: chr25:14962692-14962560 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 119, 101

Show alignments to all cow chromosomes.