Cow genome map
| Conread name: | Ss1.1-rlin03_j17.5 |
| Conread position: | 260-595 |
| Cow position: | chr26:27251886-27252227 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 262-406 |
| Cow position: | chr26:3225768-3225625 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 262-406 |
| Cow position: | chr26:9560217-9560081 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 262-441 |
| Cow position: | chr26:35335898-35335722 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 262-472 |
| Cow position: | chr26:615956-615745 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 262-511 |
| Cow position: | chr26:30754092-30753841 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-546 |
| Cow position: | chr26:9114210-9114495 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-558 |
| Cow position: | chr26:8281375-8281099 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 170, 17 |
| Conread position: | 262-576 |
| Cow position: | chr26:15551856-15551546 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-588 |
| Cow position: | chr26:3028331-3027998 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 262-592 |
| Cow position: | chr26:14896266-14896599 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 10 |
| Conread position: | 262-592 |
| Cow position: | chr26:17326465-17326794 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 262-592 |
| Cow position: | chr26:17394586-17394263 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-592 |
| Cow position: | chr26:17430207-17429874 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 262-592 |
| Cow position: | chr26:30587050-30586717 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-593 |
| Cow position: | chr26:14365924-14365601 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 160, 17 |
| Conread position: | 262-593 |
| Cow position: | chr26:33877778-33878103 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 318, 17 |
| Conread position: | 262-595 |
| Cow position: | chr26:366928-367264 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 262-595 |
| Cow position: | chr26:898700-899036 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-595 |
| Cow position: | chr26:1349331-1348995 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-595 |
| Cow position: | chr26:2418100-2417764 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-595 |
| Cow position: | chr26:8884148-8884480 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 10 |
| Conread position: | 262-595 |
| Cow position: | chr26:18856421-18856752 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 17 |
| Conread position: | 262-595 |
| Cow position: | chr26:19349195-19348863 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 262-595 |
| Cow position: | chr26:21416576-21416239 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 262-595 |
| Cow position: | chr26:21824352-21824025 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-595 |
| Cow position: | chr26:23888711-23889043 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-595 |
| Cow position: | chr26:28707763-28707428 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 18 |
| Conread position: | 262-595 |
| Cow position: | chr26:30785069-30785406 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 10 |
| Conread position: | 262-595 |
| Cow position: | chr26:35122947-35122611 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 18 |
| Conread position: | 262-595 |
| Cow position: | chr26:35561503-35561837 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 263-593 |
| Cow position: | chr26:9842093-9841776 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 157, 16 |
| Conread position: | 265-589 |
| Cow position: | chr26:6497302-6496987 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 265-592 |
| Cow position: | chr26:5677460-5677787 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 14 |
| Conread position: | 265-592 |
| Cow position: | chr26:6425297-6425627 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 265-592 |
| Cow position: | chr26:6845212-6844884 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 265-592 |
| Cow position: | chr26:9483384-9483709 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 173, 14 |
| Conread position: | 265-592 |
| Cow position: | chr26:32933215-32932889 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 14 |
| Conread position: | 265-593 |
| Cow position: | chr26:32846470-32846145 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 158, 14 |
| Conread position: | 265-593 |
| Cow position: | chr26:34013998-34014325 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 265-595 |
| Cow position: | chr26:8872143-8872478 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 14 |
| Conread position: | 266-507 |
| Cow position: | chr26:11265222-11265452 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 6, 89 |
| Conread position: | 266-593 |
| Cow position: | chr26:31792806-31793138 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 77 |
| Conread position: | 266-595 |
| Cow position: | chr26:2349870-2349540 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 266-595 |
| Cow position: | chr26:19012241-19012566 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 14 |
| Conread position: | 268-556 |
| Cow position: | chr26:6792517-6792798 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 152, 11 |
| Conread position: | 276-593 |
| Cow position: | chr26:18035226-18035543 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 91 |
| Conread position: | 276-595 |
| Cow position: | chr26:10459373-10459686 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 168, 45 |
| Conread position: | 277-592 |
| Cow position: | chr26:26306941-26306640 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 109 |
| Conread position: | 277-600 |
| Cow position: | chr26:8878305-8877980 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 143, 57 |
| Conread position: | 277-600 |
| Cow position: | chr26:34553760-34553442 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 86, 71 |
| Conread position: | 278-511 |
| Cow position: | chr26:3703349-3703584 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 133, 140 |
| Conread position: | 278-592 |
| Cow position: | chr26:18957795-18957492 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 142, 62 |
| Conread position: | 279-497 |
| Cow position: | chr26:4750119-4749900 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 279-595 |
| Cow position: | chr26:10505120-10505441 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 108, 61 |
| Conread position: | 279-595 |
| Cow position: | chr26:32051431-32051131 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 141, 108 |
| Conread position: | 280-595 |
| Cow position: | chr26:11149062-11149388 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 58, 229 |
| Conread position: | 285-595 |
| Cow position: | chr26:9839121-9838818 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 47 |
| Conread position: | 286-559 |
| Cow position: | chr26:17140217-17139938 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 227 |
| Conread position: | 287-592 |
| Cow position: | chr26:12667787-12668089 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 133, 231 |
| Conread position: | 287-593 |
| Cow position: | chr26:8087401-8087701 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 132, 233 |
| Conread position: | 287-600 |
| Cow position: | chr26:27139243-27138935 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 288-595 |
| Cow position: | chr26:12586207-12585905 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 89 |
| Conread position: | 293-593 |
| Cow position: | chr26:17995043-17994753 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 130, 63 |
| Conread position: | 295-595 |
| Cow position: | chr26:13023004-13022703 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 298-595 |
| Cow position: | chr26:2200869-2201164 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 128, 148 |
| Conread position: | 305-478 |
| Cow position: | chr26:2975671-2975847 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 320-592 |
| Cow position: | chr26:35072569-35072839 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 326-591 |
| Cow position: | chr26:28720691-28720961 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 332-593 |
| Cow position: | chr26:35564021-35563765 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 336-582 |
| Cow position: | chr26:2245840-2245581 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 344-595 |
| Cow position: | chr26:7736024-7736277 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 76, 151 |
| Conread position: | 350-595 |
| Cow position: | chr26:4440804-4441053 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 365-593 |
| Cow position: | chr26:19470063-19469836 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 365-595 |
| Cow position: | chr26:4122065-4122299 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 374-594 |
| Cow position: | chr26:4776801-4777023 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 173 |
| Conread position: | 417-595 |
| Cow position: | chr26:3226436-3226614 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 163, 30 |
| Conread position: | 419-594 |
| Cow position: | chr26:25341442-25341271 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 18, 100 |
Show alignments to all cow chromosomes.