Cow genome map
| Conread name: | Ss1.1-rlin03_j17.5 |
| Conread position: | 261-595 |
| Cow position: | chr27:16032138-16031811 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 18 |
| Conread position: | 262-377 |
| Cow position: | chr27:4332777-4332664 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 262-401 |
| Cow position: | chr27:66553-66415 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 262-404 |
| Cow position: | chr27:28686284-28686142 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 123, 17 |
| Conread position: | 262-551 |
| Cow position: | chr27:4981634-4981921 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-560 |
| Cow position: | chr27:9990954-9990661 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 262-582 |
| Cow position: | chr27:22013108-22012786 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 6, 18 |
| Conread position: | 262-591 |
| Cow position: | chr27:5913189-5913524 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 17 |
| Conread position: | 262-591 |
| Cow position: | chr27:21284940-21284614 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:1535444-1535768 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 265, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:3991259-3991597 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 114, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:8200062-8200390 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:9331997-9332330 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:13900156-13900480 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:19524462-19524129 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:24296991-24296658 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:26327316-26327645 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:27194087-27193768 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 161, 17 |
| Conread position: | 262-592 |
| Cow position: | chr27:27288751-27289084 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-593 |
| Cow position: | chr27:23293817-23294136 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 321, 17 |
| Conread position: | 262-593 |
| Cow position: | chr27:27730212-27729889 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 157, 17 |
| Conread position: | 262-593 |
| Cow position: | chr27:30571077-30571405 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 10 |
| Conread position: | 262-595 |
| Cow position: | chr27:22743129-22742800 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-595 |
| Cow position: | chr27:22798196-22797864 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 262-596 |
| Cow position: | chr27:12263171-12262852 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 238 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 271, 11 |
| Conread position: | 262-596 |
| Cow position: | chr27:25801923-25801585 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 265-373 |
| Cow position: | chr27:1211624-1211731 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 265-406 |
| Cow position: | chr27:25884650-25884507 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 265-589 |
| Cow position: | chr27:28294603-28294281 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 265-590 |
| Cow position: | chr27:15374092-15374409 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 265-592 |
| Cow position: | chr27:10378190-10378516 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 7 |
| Conread position: | 265-592 |
| Cow position: | chr27:26599197-26599511 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 155, 7 |
| Conread position: | 265-593 |
| Cow position: | chr27:30034421-30034752 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 266-582 |
| Cow position: | chr27:3233264-3232949 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 266-592 |
| Cow position: | chr27:12749290-12749616 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 266-592 |
| Cow position: | chr27:20809669-20809997 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 13 |
| Conread position: | 266-592 |
| Cow position: | chr27:27665263-27665589 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 266-595 |
| Cow position: | chr27:166656-166335 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 13 |
| Conread position: | 266-595 |
| Cow position: | chr27:3995634-3995309 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 266-595 |
| Cow position: | chr27:8591322-8591656 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 142, 13 |
| Conread position: | 266-595 |
| Cow position: | chr27:28894266-28894612 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 267-595 |
| Cow position: | chr27:797349-797021 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 12 |
| Conread position: | 268-593 |
| Cow position: | chr27:15273814-15273489 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 276-441 |
| Cow position: | chr27:5985128-5985294 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 277-590 |
| Cow position: | chr27:1847108-1846795 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 124, 173 |
| Conread position: | 277-592 |
| Cow position: | chr27:8260933-8261243 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 161, 16 |
| Conread position: | 277-592 |
| Cow position: | chr27:31267504-31267818 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 143, 63 |
| Conread position: | 277-593 |
| Cow position: | chr27:17567400-17567696 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 277-596 |
| Cow position: | chr27:24114423-24114739 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 11 |
| Conread position: | 278-578 |
| Cow position: | chr27:22822137-22821846 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 161, 62 |
| Conread position: | 278-592 |
| Cow position: | chr27:15635063-15634749 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 91 |
| Conread position: | 279-592 |
| Cow position: | chr27:15034827-15034509 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 280-589 |
| Cow position: | chr27:23201557-23201248 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 139, 54 |
| Conread position: | 285-593 |
| Cow position: | chr27:11433406-11433707 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 86, 44 |
| Conread position: | 286-486 |
| Cow position: | chr27:15332123-15332318 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 45 |
| Conread position: | 286-595 |
| Cow position: | chr27:15874778-15874462 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 94 |
| Conread position: | 293-413 |
| Cow position: | chr27:7926275-7926155 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 297-457 |
| Cow position: | chr27:25738436-25738600 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 308-595 |
| Cow position: | chr27:28012203-28012493 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 112, 44 |
| Conread position: | 318-595 |
| Cow position: | chr27:2379694-2379953 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 235, 34 |
| Conread position: | 321-493 |
| Cow position: | chr27:25358364-25358190 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 323-595 |
| Cow position: | chr27:11679683-11679413 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 329-595 |
| Cow position: | chr27:13352613-13352883 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 97, 186 |
| Conread position: | 335-559 |
| Cow position: | chr27:11488019-11488245 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 5 |
| Conread position: | 335-595 |
| Cow position: | chr27:1676211-1675945 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 73, 86 |
| Conread position: | 338-595 |
| Cow position: | chr27:1905229-1904974 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 120 |
| Conread position: | 340-596 |
| Cow position: | chr27:18696668-18696928 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 341-593 |
| Cow position: | chr27:21496706-21496956 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 82, 36 |
| Conread position: | 363-595 |
| Cow position: | chr27:12147293-12147057 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 365-595 |
| Cow position: | chr27:1520033-1520267 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 366-592 |
| Cow position: | chr27:4332371-4332141 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 389-592 |
| Cow position: | chr27:22151669-22151869 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 37, 129 |
| Conread position: | 395-595 |
| Cow position: | chr27:19690968-19690765 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 395-595 |
| Cow position: | chr27:22734099-22733896 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 145 |
| Conread position: | 425-595 |
| Cow position: | chr27:1031255-1031428 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 437-600 |
| Cow position: | chr27:29858907-29859066 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 438-595 |
| Cow position: | chr27:25797773-25797931 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 439-591 |
| Cow position: | chr27:25965516-25965365 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 446-595 |
| Cow position: | chr27:17404426-17404276 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 446-596 |
| Cow position: | chr27:28923441-28923594 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 29 |
Show alignments to all cow chromosomes.