Cow genome map

Conread name: Ss1.1-rlin03_j17.5

Conread position: 261-595
Cow position:
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 18

Conread position: 262-377
Cow position:
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 262-401
Cow position:
Alignm length: 140
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 262-404
Cow position:
Alignm length: 144
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 123, 17

Conread position: 262-551
Cow position:
Alignm length: 293
Alignm identity: 208
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 158, 17

Conread position: 262-560
Cow position:
Alignm length: 302
Alignm identity: 211
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 164, 17

Conread position: 262-582
Cow position:
Alignm length: 326
Alignm identity: 225
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 6, 18

Conread position: 262-591
Cow position:
Alignm length: 339
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 17

Conread position: 262-591
Cow position:
Alignm length: 340
Alignm identity: 228
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 17

Conread position: 262-592
Cow position:
Alignm length: 332
Alignm identity: 229
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 265, 17

Conread position: 262-592
Cow position:
Alignm length: 342
Alignm identity: 239
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 114, 17

Conread position: 262-592
Cow position:
Alignm length: 333
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position:
Alignm length: 337
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 17

Conread position: 262-592
Cow position:
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 262-592
Cow position:
Alignm length: 335
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-592
Cow position:
Alignm length: 335
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 262-592
Cow position:
Alignm length: 335
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 262-592
Cow position:
Alignm length: 335
Alignm identity: 224
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 161, 17

Conread position: 262-592
Cow position:
Alignm length: 335
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-593
Cow position:
Alignm length: 334
Alignm identity: 215
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 321, 17

Conread position: 262-593
Cow position:
Alignm length: 335
Alignm identity: 217
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 157, 17

Conread position: 262-593
Cow position:
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 10

Conread position: 262-595
Cow position:
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-595
Cow position:
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 262-596
Cow position:
Alignm length: 337
Alignm identity: 238
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 271, 11

Conread position: 262-596
Cow position:
Alignm length: 341
Alignm identity: 232
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 158, 17

Conread position: 265-373
Cow position:
Alignm length: 109
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 265-406
Cow position:
Alignm length: 144
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 265-589
Cow position:
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 265-590
Cow position:
Alignm length: 329
Alignm identity: 216
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 143, 14

Conread position: 265-592
Cow position:
Alignm length: 332
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 7

Conread position: 265-592
Cow position:
Alignm length: 332
Alignm identity: 234
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 155, 7

Conread position: 265-593
Cow position:
Alignm length: 333
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 155, 14

Conread position: 266-582
Cow position:
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 13

Conread position: 266-592
Cow position:
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 13

Conread position: 266-592
Cow position:
Alignm length: 330
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 13

Conread position: 266-592
Cow position:
Alignm length: 338
Alignm identity: 235
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 48, 13

Conread position: 266-595
Cow position:
Alignm length: 335
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 13

Conread position: 266-595
Cow position:
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 13

Conread position: 266-595
Cow position:
Alignm length: 337
Alignm identity: 225
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 142, 13

Conread position: 266-595
Cow position:
Alignm length: 352
Alignm identity: 237
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 80, 13

Conread position: 267-595
Cow position:
Alignm length: 333
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 12

Conread position: 268-593
Cow position:
Alignm length: 334
Alignm identity: 229
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 92, 63

Conread position: 276-441
Cow position:
Alignm length: 167
Alignm identity: 121
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 144, 0

Conread position: 277-590
Cow position:
Alignm length: 318
Alignm identity: 220
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 124, 173

Conread position: 277-592
Cow position:
Alignm length: 321
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 161, 16

Conread position: 277-592
Cow position:
Alignm length: 324
Alignm identity: 220
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 143, 63

Conread position: 277-593
Cow position:
Alignm length: 317
Alignm identity: 220
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 63, 0

Conread position: 277-596
Cow position:
Alignm length: 328
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 11

Conread position: 278-578
Cow position:
Alignm length: 308
Alignm identity: 205
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 161, 62

Conread position: 278-592
Cow position:
Alignm length: 319
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 91

Conread position: 279-592
Cow position:
Alignm length: 319
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 280-589
Cow position:
Alignm length: 313
Alignm identity: 207
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 139, 54

Conread position: 285-593
Cow position:
Alignm length: 315
Alignm identity: 214
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 86, 44

Conread position: 286-486
Cow position:
Alignm length: 203
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 151, 45

Conread position: 286-595
Cow position:
Alignm length: 329
Alignm identity: 233
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 37, 94

Conread position: 293-413
Cow position:
Alignm length: 121
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 297-457
Cow position:
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 74, 86

Conread position: 308-595
Cow position:
Alignm length: 296
Alignm identity: 199
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 112, 44

Conread position: 318-595
Cow position:
Alignm length: 280
Alignm identity: 202
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 235, 34

Conread position: 321-493
Cow position:
Alignm length: 175
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 0

Conread position: 323-595
Cow position:
Alignm length: 278
Alignm identity: 185
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 30, 36

Conread position: 329-595
Cow position:
Alignm length: 272
Alignm identity: 193
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 97, 186

Conread position: 335-559
Cow position:
Alignm length: 229
Alignm identity: 155
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 5

Conread position: 335-595
Cow position:
Alignm length: 268
Alignm identity: 190
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 73, 86

Conread position: 338-595
Cow position:
Alignm length: 260
Alignm identity: 178
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 120

Conread position: 340-596
Cow position:
Alignm length: 261
Alignm identity: 188
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 86, 0

Conread position: 341-593
Cow position:
Alignm length: 257
Alignm identity: 174
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 82, 36

Conread position: 363-595
Cow position:
Alignm length: 237
Alignm identity: 172
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 63, 0

Conread position: 365-595
Cow position:
Alignm length: 235
Alignm identity: 170
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 61, 0

Conread position: 366-592
Cow position:
Alignm length: 231
Alignm identity: 158
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 389-592
Cow position:
Alignm length: 208
Alignm identity: 159
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 37, 129

Conread position: 395-595
Cow position:
Alignm length: 204
Alignm identity: 144
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 395-595
Cow position:
Alignm length: 205
Alignm identity: 141
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 145

Conread position: 425-595
Cow position:
Alignm length: 174
Alignm identity: 127
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 437-600
Cow position:
Alignm length: 164
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 438-595
Cow position:
Alignm length: 159
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 146, 0

Conread position: 439-591
Cow position:
Alignm length: 155
Alignm identity: 116
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 23

Conread position: 446-595
Cow position:
Alignm length: 151
Alignm identity: 112
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 134, 0

Conread position: 446-596
Cow position:
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 82, 29

Show alignments to all cow chromosomes.