Cow genome map
| Conread name: | Ss1.1-rlin14_p8.5 |
| Conread position: | 1-162 |
| Cow position: | chr11:19259380-19259541 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-163 |
| Cow position: | chr11:41272270-41272109 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 1-163 |
| Cow position: | chr11:50951687-50951528 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 3-143 |
| Cow position: | chr11:39864323-39864179 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 3-147 |
| Cow position: | chr11:48900709-48900858 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 3-148 |
| Cow position: | chr11:62015875-62016019 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 3-153 |
| Cow position: | chr11:19502098-19501950 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 3-156 |
| Cow position: | chr11:62599332-62599184 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-156 |
| Cow position: | chr11:72869691-72869840 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 3-162 |
| Cow position: | chr11:19586591-19586430 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 3-163 |
| Cow position: | chr11:52402594-52402435 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 3-164 |
| Cow position: | chr11:50937608-50937775 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 154 |
| Conread position: | 3-167 |
| Cow position: | chr11:34945941-34946105 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 152, 84 |
| Conread position: | 3-168 |
| Cow position: | chr11:62573878-62574043 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 3-172 |
| Cow position: | chr11:14045949-14046115 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 160, 21 |
| Conread position: | 4-119 |
| Cow position: | chr11:22009257-22009372 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-123 |
| Cow position: | chr11:13219190-13219072 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 4-124 |
| Cow position: | chr11:49218218-49218338 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-127 |
| Cow position: | chr11:40269465-40269588 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 118, 108 |
| Conread position: | 4-127 |
| Cow position: | chr11:45553887-45553766 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 4-130 |
| Cow position: | chr11:34136631-34136506 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-137 |
| Cow position: | chr11:29978204-29978340 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 4-143 |
| Cow position: | chr11:77008170-77008033 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-144 |
| Cow position: | chr11:30211039-30210894 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 4-144 |
| Cow position: | chr11:64905127-64904988 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 4-153 |
| Cow position: | chr11:14941481-14941627 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-153 |
| Cow position: | chr11:43646281-43646431 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 4-153 |
| Cow position: | chr11:47193643-47193496 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 4-153 |
| Cow position: | chr11:50953434-50953582 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-153 |
| Cow position: | chr11:52832592-52832740 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-153 |
| Cow position: | chr11:61427722-61427575 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-156 |
| Cow position: | chr11:9368955-9368806 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 99 |
| Conread position: | 4-159 |
| Cow position: | chr11:62215063-62215218 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 118, 73 |
| Conread position: | 4-161 |
| Cow position: | chr11:59365945-59366103 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 4-162 |
| Cow position: | chr11:11785462-11785304 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 63, 89 |
| Conread position: | 4-163 |
| Cow position: | chr11:16232805-16232967 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 4-164 |
| Cow position: | chr11:5648868-5648716 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 4-164 |
| Cow position: | chr11:11752387-11752547 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-164 |
| Cow position: | chr11:19606441-19606288 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 4-164 |
| Cow position: | chr11:21136943-21136786 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-164 |
| Cow position: | chr11:27722522-27722362 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-164 |
| Cow position: | chr11:31422860-31422701 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-164 |
| Cow position: | chr11:32438823-32438981 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 4-164 |
| Cow position: | chr11:67871474-67871632 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 4-166 |
| Cow position: | chr11:65958572-65958732 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 4-167 |
| Cow position: | chr11:26468275-26468115 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 6-162 |
| Cow position: | chr11:27681628-27681473 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 6-164 |
| Cow position: | chr11:28395603-28395445 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-166 |
| Cow position: | chr11:84795622-84795781 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 6-167 |
| Cow position: | chr11:40275474-40275634 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 6-167 |
| Cow position: | chr11:40278966-40279126 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 7-156 |
| Cow position: | chr11:63508537-63508392 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 8-114 |
| Cow position: | chr11:7684082-7683978 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 8-144 |
| Cow position: | chr11:44609685-44609555 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 8-144 |
| Cow position: | chr11:56821117-56821253 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-164 |
| Cow position: | chr11:8828507-8828658 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 8-167 |
| Cow position: | chr11:18144693-18144850 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 12-158 |
| Cow position: | chr11:24216260-24216118 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 17-156 |
| Cow position: | chr11:35775454-35775315 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-157 |
| Cow position: | chr11:29786400-29786522 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-168 |
| Cow position: | chr11:65444749-65444877 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 36-167 |
| Cow position: | chr11:9083574-9083444 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.