Cow genome map
| Conread name: | Ss1.1-rlin14_p8.5 |
| Conread position: | 1-156 |
| Cow position: | chr29:11005882-11005728 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1-158 |
| Cow position: | chr29:1340930-1340776 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-158 |
| Cow position: | chr29:5616720-5616876 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 3-130 |
| Cow position: | chr29:942969-942839 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 3-130 |
| Cow position: | chr29:8862334-8862461 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 3-144 |
| Cow position: | chr29:18021537-18021678 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-164 |
| Cow position: | chr29:356467-356306 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 103, 108 |
| Conread position: | 3-165 |
| Cow position: | chr29:30350785-30350947 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-121 |
| Cow position: | chr29:8794497-8794379 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 4-132 |
| Cow position: | chr29:2274695-2274822 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 4-132 |
| Cow position: | chr29:11677317-11677444 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 4-141 |
| Cow position: | chr29:21174562-21174696 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-144 |
| Cow position: | chr29:21012198-21012337 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 4-149 |
| Cow position: | chr29:6208205-6208065 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 4-153 |
| Cow position: | chr29:27688593-27688742 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-156 |
| Cow position: | chr29:13126975-13127129 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 4-157 |
| Cow position: | chr29:9512405-9512252 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-157 |
| Cow position: | chr29:19607380-19607531 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-157 |
| Cow position: | chr29:35442317-35442470 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-159 |
| Cow position: | chr29:21186729-21186881 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-159 |
| Cow position: | chr29:39023193-39023349 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 4-161 |
| Cow position: | chr29:29559577-29559731 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-162 |
| Cow position: | chr29:21675535-21675383 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 4-164 |
| Cow position: | chr29:942770-942617 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 4-164 |
| Cow position: | chr29:4367868-4367711 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-164 |
| Cow position: | chr29:10153648-10153810 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 41, 118 |
| Conread position: | 4-164 |
| Cow position: | chr29:21265905-21265748 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-164 |
| Cow position: | chr29:22895872-22895712 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-164 |
| Cow position: | chr29:26985372-26985212 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-164 |
| Cow position: | chr29:37960833-37960989 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-164 |
| Cow position: | chr29:40337397-40337552 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 4-165 |
| Cow position: | chr29:11366379-11366223 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 5-164 |
| Cow position: | chr29:26299113-26298960 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 6-168 |
| Cow position: | chr29:708988-709152 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 8-118 |
| Cow position: | chr29:19631-19521 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 108, 78 |
| Conread position: | 8-164 |
| Cow position: | chr29:7663129-7663283 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 16-161 |
| Cow position: | chr29:9912310-9912164 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 16-164 |
| Cow position: | chr29:4444851-4444703 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-167 |
| Cow position: | chr29:650396-650263 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 35-137 |
| Cow position: | chr29:36435544-36435442 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.