Cow genome map
| Conread name: | Ss1.1-rlin14_p8.5 |
| Conread position: | 1-119 |
| Cow position: | chr5:5929635-5929517 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-152 |
| Cow position: | chr5:46610922-46611074 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:41598536-41598693 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 1-162 |
| Cow position: | chr5:56799094-56799252 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 3-148 |
| Cow position: | chr5:34441606-34441751 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-153 |
| Cow position: | chr5:71454438-71454588 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-156 |
| Cow position: | chr5:7723837-7723686 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-161 |
| Cow position: | chr5:68329815-68329972 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 3-162 |
| Cow position: | chr5:27419555-27419714 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-164 |
| Cow position: | chr5:39875298-39875137 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-120 |
| Cow position: | chr5:39134087-39134203 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-127 |
| Cow position: | chr5:51048792-51048670 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 4-131 |
| Cow position: | chr5:23536353-23536227 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 4-132 |
| Cow position: | chr5:18695333-18695205 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-137 |
| Cow position: | chr5:41604796-41604665 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-149 |
| Cow position: | chr5:7432986-7433131 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 4-153 |
| Cow position: | chr5:15483208-15483056 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-153 |
| Cow position: | chr5:48178209-48178362 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 125 |
| Conread position: | 4-154 |
| Cow position: | chr5:50860036-50859889 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 83, 20 |
| Conread position: | 4-156 |
| Cow position: | chr5:21530932-21531084 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-157 |
| Cow position: | chr5:58320298-58320448 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 4-159 |
| Cow position: | chr5:39695824-39695670 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-159 |
| Cow position: | chr5:47680844-47680999 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 7, 79 |
| Conread position: | 4-159 |
| Cow position: | chr5:54090210-54090054 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 4-162 |
| Cow position: | chr5:18554065-18553912 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 4-163 |
| Cow position: | chr5:28945887-28946045 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 4-163 |
| Cow position: | chr5:34914379-34914538 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-164 |
| Cow position: | chr5:6987623-6987463 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 4-164 |
| Cow position: | chr5:17028268-17028108 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-164 |
| Cow position: | chr5:23366592-23366750 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-164 |
| Cow position: | chr5:23527457-23527618 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 4-164 |
| Cow position: | chr5:23529110-23529265 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 4-164 |
| Cow position: | chr5:27411228-27411388 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-164 |
| Cow position: | chr5:29756509-29756351 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 4-164 |
| Cow position: | chr5:41946020-41945864 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 4-164 |
| Cow position: | chr5:63328722-63328878 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 18 |
| Conread position: | 4-167 |
| Cow position: | chr5:25899703-25899861 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 4-167 |
| Cow position: | chr5:36487522-36487685 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 79 |
| Conread position: | 4-167 |
| Cow position: | chr5:48758113-48757949 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 111 |
| Conread position: | 5-163 |
| Cow position: | chr5:31923545-31923387 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 113, 140 |
| Conread position: | 5-164 |
| Cow position: | chr5:27102622-27102781 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-164 |
| Cow position: | chr5:46798414-46798257 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 6-142 |
| Cow position: | chr5:66831366-66831501 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 6-144 |
| Cow position: | chr5:1949887-1950021 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 6-156 |
| Cow position: | chr5:29844451-29844301 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-162 |
| Cow position: | chr5:58748938-58748786 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 6-164 |
| Cow position: | chr5:66190155-66190001 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 6-168 |
| Cow position: | chr5:39442467-39442306 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 155, 46 |
| Conread position: | 7-153 |
| Cow position: | chr5:17267722-17267867 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 7-157 |
| Cow position: | chr5:36027978-36028124 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 8-137 |
| Cow position: | chr5:42049852-42049725 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 8-168 |
| Cow position: | chr5:62639073-62638910 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 9-159 |
| Cow position: | chr5:58344026-58343877 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 11-163 |
| Cow position: | chr5:75687160-75687315 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 125, 23 |
| Conread position: | 15-156 |
| Cow position: | chr5:61365693-61365553 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 24-153 |
| Cow position: | chr5:53145599-53145728 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-157 |
| Cow position: | chr5:31660514-31660637 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-164 |
| Cow position: | chr5:7552272-7552403 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 38-149 |
| Cow position: | chr5:6895988-6896095 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 49-157 |
| Cow position: | chr5:21534983-21535091 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.