Cow genome map
| Conread name: | Ss1.1-rlin14_p8.5 |
| Conread position: | 1-162 |
| Cow position: | chr6:12421100-12421261 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 102, 155 |
| Conread position: | 1-165 |
| Cow position: | chr6:64427414-64427251 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-167 |
| Cow position: | chr6:24222969-24223131 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 160, 88 |
| Conread position: | 3-153 |
| Cow position: | chr6:45064829-45064979 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 3-157 |
| Cow position: | chr6:827520-827669 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 3-157 |
| Cow position: | chr6:36652605-36652456 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 3-157 |
| Cow position: | chr6:66057960-66057806 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 32, 128 |
| Conread position: | 3-164 |
| Cow position: | chr6:2899378-2899542 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 3-164 |
| Cow position: | chr6:56376162-56376321 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 3-167 |
| Cow position: | chr6:54478963-54479126 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 4-112 |
| Cow position: | chr6:1907706-1907599 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-124 |
| Cow position: | chr6:14477337-14477217 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-129 |
| Cow position: | chr6:64313977-64314098 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 4-130 |
| Cow position: | chr6:31225894-31225768 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-135 |
| Cow position: | chr6:48806822-48806953 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-137 |
| Cow position: | chr6:25224426-25224293 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-137 |
| Cow position: | chr6:37612292-37612158 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 125, 82 |
| Conread position: | 4-144 |
| Cow position: | chr6:29649292-29649153 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-146 |
| Cow position: | chr6:4023288-4023147 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-149 |
| Cow position: | chr6:49800452-49800309 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 4-151 |
| Cow position: | chr6:7707320-7707174 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 4-155 |
| Cow position: | chr6:63196976-63197127 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-156 |
| Cow position: | chr6:16626137-16625978 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 4-156 |
| Cow position: | chr6:53674048-53673899 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 4-157 |
| Cow position: | chr6:12652388-12652242 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-157 |
| Cow position: | chr6:36454409-36454562 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-157 |
| Cow position: | chr6:67248042-67247889 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 4-159 |
| Cow position: | chr6:7173567-7173717 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 4-159 |
| Cow position: | chr6:20255220-20255378 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 4-162 |
| Cow position: | chr6:24545800-24545643 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 4-162 |
| Cow position: | chr6:46676244-46676398 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 4-162 |
| Cow position: | chr6:55475442-55475284 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-163 |
| Cow position: | chr6:60503564-60503408 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 151, 60 |
| Conread position: | 4-164 |
| Cow position: | chr6:15782328-15782487 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 4-164 |
| Cow position: | chr6:58332073-58331915 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 4-168 |
| Cow position: | chr6:28810819-28810977 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 149, 39 |
| Conread position: | 5-144 |
| Cow position: | chr6:47772777-47772916 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-153 |
| Cow position: | chr6:53939149-53939002 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 5-156 |
| Cow position: | chr6:52705393-52705542 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 5-157 |
| Cow position: | chr6:51294471-51294319 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 95, 91 |
| Conread position: | 6-160 |
| Cow position: | chr6:50034545-50034695 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 6-167 |
| Cow position: | chr6:13718948-13718787 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 158, 76 |
| Conread position: | 6-170 |
| Cow position: | chr6:57118758-57118921 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 158, 29 |
| Conread position: | 7-144 |
| Cow position: | chr6:23986278-23986414 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 7-148 |
| Cow position: | chr6:28069413-28069270 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 7-159 |
| Cow position: | chr6:59496402-59496252 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 7-162 |
| Cow position: | chr6:28079731-28079885 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 8-170 |
| Cow position: | chr6:48572697-48572860 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 27-164 |
| Cow position: | chr6:33929383-33929520 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-164 |
| Cow position: | chr6:51387906-51387776 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.