Cow genome map

Conread name: Ss1.1-rlin29_g17.5

Conread position: 1-383
Cow position:
Alignm length: 383
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-431
Cow position:
Alignm length: 434
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 408

Conread position: 1-481
Cow position:
Alignm length: 488
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 0

Conread position: 2-376
Cow position:
Alignm length: 376
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 335

Conread position: 3-203
Cow position:
Alignm length: 202
Alignm identity: 144
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 159, 151

Conread position: 3-380
Cow position:
Alignm length: 378
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-481
Cow position:
Alignm length: 486
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 0

Conread position: 4-132
Cow position:
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 4-308
Cow position:
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 247

Conread position: 4-380
Cow position:
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 152

Conread position: 4-485
Cow position:
Alignm length: 489
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 0

Conread position: 4-505
Cow position:
Alignm length: 510
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 503

Conread position: 5-380
Cow position:
Alignm length: 376
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 0

Conread position: 5-481
Cow position:
Alignm length: 484
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 0

Conread position: 6-216
Cow position:
Alignm length: 212
Alignm identity: 160
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 163, 171

Conread position: 6-376
Cow position:
Alignm length: 371
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-380
Cow position:
Alignm length: 375
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 6-383
Cow position:
Alignm length: 379
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 163

Conread position: 6-468
Cow position:
Alignm length: 471
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 171

Conread position: 7-331
Cow position:
Alignm length: 327
Alignm identity: 203
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 75

Conread position: 7-370
Cow position:
Alignm length: 364
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-380
Cow position:
Alignm length: 374
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-383
Cow position:
Alignm length: 378
Alignm identity: 249
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 64

Conread position: 7-393
Cow position:
Alignm length: 387
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 7-422
Cow position:
Alignm length: 422
Alignm identity: 258
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 88

Conread position: 7-481
Cow position:
Alignm length: 482
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 0

Conread position: 7-482
Cow position:
Alignm length: 483
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 0

Conread position: 8-306
Cow position:
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 0

Conread position: 8-319
Cow position:
Alignm length: 313
Alignm identity: 190
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 231, 244

Conread position: 8-319
Cow position:
Alignm length: 313
Alignm identity: 196
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 63

Conread position: 8-348
Cow position:
Alignm length: 342
Alignm identity: 210
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 240, 245

Conread position: 8-359
Cow position:
Alignm length: 352
Alignm identity: 214
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 8-376
Cow position:
Alignm length: 369
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-380
Cow position:
Alignm length: 374
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 168

Conread position: 8-409
Cow position:
Alignm length: 402
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 0

Conread position: 8-484
Cow position:
Alignm length: 486
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 176

Conread position: 9-235
Cow position:
Alignm length: 232
Alignm identity: 159
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 89

Conread position: 9-507
Cow position:
Alignm length: 515
Alignm identity: 312
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 80, 59

Conread position: 14-399
Cow position:
Alignm length: 388
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 322

Conread position: 20-349
Cow position:
Alignm length: 333
Alignm identity: 208
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 53

Conread position: 26-370
Cow position:
Alignm length: 346
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 51

Conread position: 51-480
Cow position:
Alignm length: 440
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 37

Conread position: 53-335
Cow position:
Alignm length: 287
Alignm identity: 181
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 99, 106

Conread position: 88-479
Cow position:
Alignm length: 401
Alignm identity: 262
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 84, 96

Conread position: 97-479
Cow position:
Alignm length: 397
Alignm identity: 254
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 19

Conread position: 367-612
Cow position:
Alignm length: 248
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Show alignments to all cow chromosomes.