Cow genome map
| Conread name: | Ss1.1-rlin29_g17.5 |
| Conread position: | 1-383 |
| Cow position: | chrX:25310114-25310496 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-431 |
| Cow position: | chrX:29045036-29044604 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 408 |
| Conread position: | 1-481 |
| Cow position: | chrX:25309778-25310265 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 0 |
| Conread position: | 2-376 |
| Cow position: | chrX:25325026-25324652 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 335 |
| Conread position: | 3-203 |
| Cow position: | chrX:25324437-25324237 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 159, 151 |
| Conread position: | 3-380 |
| Cow position: | chrX:29045118-29044741 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-481 |
| Cow position: | chrX:29045202-29044717 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 4-132 |
| Cow position: | chrX:25310453-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-308 |
| Cow position: | chrX:29045684-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 247 |
| Conread position: | 4-380 |
| Cow position: | chrX:25309697-25310073 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 152 |
| Conread position: | 4-485 |
| Cow position: | chrX:25325108-25324620 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 0 |
| Conread position: | 4-505 |
| Cow position: | chrX:25324772-25324264 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 503 |
| Conread position: | 5-380 |
| Cow position: | chrX:25324603-25324230 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 5-481 |
| Cow position: | chrX:25325611-25325128 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 0 |
| Conread position: | 6-216 |
| Cow position: | chrX:25310371-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 163, 171 |
| Conread position: | 6-376 |
| Cow position: | chrX:25325358-25324988 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-380 |
| Cow position: | chrX:29045364-29044993 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 6-383 |
| Cow position: | chrX:25324854-25324477 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 163 |
| Conread position: | 6-468 |
| Cow position: | chrX:25309951-25310420 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 171 |
| Conread position: | 7-331 |
| Cow position: | chrX:13826718-13826394 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 7-370 |
| Cow position: | chrX:25310204-25310567 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-380 |
| Cow position: | chrX:25325189-25324816 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-383 |
| Cow position: | chrX:29045513-29045158 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 7-393 |
| Cow position: | chrX:25325441-25325058 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 7-422 |
| Cow position: | chrX:12627333-12627747 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 88 |
| Conread position: | 7-481 |
| Cow position: | chrX:29045282-29044801 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 0 |
| Conread position: | 7-482 |
| Cow position: | chrX:25324937-25324455 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 8-306 |
| Cow position: | chrX:25310289-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 0 |
| Conread position: | 8-319 |
| Cow position: | chrX:13826549-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 231, 244 |
| Conread position: | 8-319 |
| Cow position: | chrX:14181327-14181016 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 8-348 |
| Cow position: | chrX:13826801-13826461 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 240, 245 |
| Conread position: | 8-359 |
| Cow position: | chrX:14181243-14180892 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-376 |
| Cow position: | chrX:25325692-25325324 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-380 |
| Cow position: | chrX:25325272-25324900 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 168 |
| Conread position: | 8-409 |
| Cow position: | chrX:25309869-25310269 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 0 |
| Conread position: | 8-484 |
| Cow position: | chrX:25325776-25325293 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 176 |
| Conread position: | 9-235 |
| Cow position: | chrX:12627837-12628063 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 89 |
| Conread position: | 9-507 |
| Cow position: | chrX:12627586-12628090 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 312 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 80, 59 |
| Conread position: | 14-399 |
| Cow position: | chrX:29045758-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 322 |
| Conread position: | 20-349 |
| Cow position: | chrX:13826873-13826544 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 53 |
| Conread position: | 26-370 |
| Cow position: | chrX:29045830-29045486 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 51-480 |
| Cow position: | chrX:25309660-25310097 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 37 |
| Conread position: | 53-335 |
| Cow position: | chrX:13826924-13826640 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 99, 106 |
| Conread position: | 88-479 |
| Cow position: | chrX:29045852-29045453 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 84, 96 |
| Conread position: | 97-479 |
| Cow position: | chrX:25325857-25325466 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 367-612 |
| Cow position: | chrX:29044617-29044377 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 18 |
Show alignments to all cow chromosomes.