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Cow genome map

           
Conread name:
           
Ss1.1-rlin34_d7.5
        

               
Conread position:
               
27-439
               

               
Cow position:
               
chr25:12098081-12097655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
80, 34
               

               
Conread position:
               
46-290
               

               
Cow position:
               
chr25:2041666-2041906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
50-442
               

               
Cow position:
               
chr25:15273889-15273499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 170
               

               
Conread position:
               
58-407
               

               
Cow position:
               
chr25:31732116-31732492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
20, 114
               

               
Conread position:
               
58-411
               

               
Cow position:
               
chr25:30462102-30462461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
21, 160
               

               
Conread position:
               
59-442
               

               
Cow position:
               
chr25:33256556-33256178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
59-452
               

               
Cow position:
               
chr25:26089613-26090014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 91
               

               
Conread position:
               
62-340
               

               
Cow position:
               
chr25:33204891-33205171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
20, 60
               

               
Conread position:
               
62-372
               

               
Cow position:
               
chr25:12932818-12932507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
68, 49
               

               
Conread position:
               
63-356
               

               
Cow position:
               
chr25:36555488-36555796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
19, 78
               

               
Conread position:
               
64-357
               

               
Cow position:
               
chr25:24066481-24066765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
64-411
               

               
Cow position:
               
chr25:2415009-2414657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
64-456
               

               
Cow position:
               
chr25:17975191-17975571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 14
               

               
Conread position:
               
65-411
               

               
Cow position:
               
chr25:24136256-24136598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
93, 42
               

               
Conread position:
               
65-441
               

               
Cow position:
               
chr25:11436615-11436991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
65-442
               

               
Cow position:
               
chr25:6002838-6003181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
117, 15
               

               
Conread position:
               
65-442
               

               
Cow position:
               
chr25:34768537-34768910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 74
               

               
Conread position:
               
66-260
               

               
Cow position:
               
chr25:23998732-23998931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
40, 146
               

               
Conread position:
               
66-286
               

               
Cow position:
               
chr25:10364149-10364367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 13
               

               
Conread position:
               
66-293
               

               
Cow position:
               
chr25:35109071-35109309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
39, 152
               

               
Conread position:
               
66-357
               

               
Cow position:
               
chr25:17474319-17474619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
66-439
               

               
Cow position:
               
chr25:21191686-21191300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 151
               

               
Conread position:
               
66-442
               

               
Cow position:
               
chr25:12778352-12778722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 82
               

               
Conread position:
               
66-442
               

               
Cow position:
               
chr25:13295070-13294716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
41, 132
               

               
Conread position:
               
67-442
               

               
Cow position:
               
chr25:12755285-12755681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 107
               

               
Conread position:
               
67-442
               

               
Cow position:
               
chr25:14720938-14720562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 150
               

               
Conread position:
               
68-252
               

               
Cow position:
               
chr25:15573585-15573389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
68-322
               

               
Cow position:
               
chr25:11823239-11823499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 145
               

               
Conread position:
               
68-393
               

               
Cow position:
               
chr25:22242152-22241835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
70-430
               

               
Cow position:
               
chr25:20624753-20625109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
61, 41
               

               
Conread position:
               
70-442
               

               
Cow position:
               
chr25:8157329-8157700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
71-340
               

               
Cow position:
               
chr25:20143350-20143631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
36, 7
               

               
Conread position:
               
74-409
               

               
Cow position:
               
chr25:18266342-18266000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
84, 51
               

               
Conread position:
               
74-412
               

               
Cow position:
               
chr25:9056354-9056026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
75-265
               

               
Cow position:
               
chr25:2362023-2361825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 143
               

               
Conread position:
               
75-384
               

               
Cow position:
               
chr25:12509823-12510144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
25, 143
               

               
Conread position:
               
75-427
               

               
Cow position:
               
chr25:26457498-26457859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
35, 45
               

               
Conread position:
               
75-438
               

               
Cow position:
               
chr25:8511913-8512281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
75-440
               

               
Cow position:
               
chr25:26655090-26654718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
75-442
               

               
Cow position:
               
chr25:24405554-24405926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
75-452
               

               
Cow position:
               
chr25:7217014-7216628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 9
               

               
Conread position:
               
78-291
               

               
Cow position:
               
chr25:18929011-18929230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
29, 137
               

               
Conread position:
               
78-376
               

               
Cow position:
               
chr25:4489098-4488793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 129
               

               
Conread position:
               
78-439
               

               
Cow position:
               
chr25:4681400-4681046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
78-442
               

               
Cow position:
               
chr25:8576869-8576503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
78-442
               

               
Cow position:
               
chr25:20069908-20069530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 148
               

               
Conread position:
               
80-397
               

               
Cow position:
               
chr25:34378922-34379253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
31, 138
               

               
Conread position:
               
80-409
               

               
Cow position:
               
chr25:5407907-5407583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
80-411
               

               
Cow position:
               
chr25:10156746-10156427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
80-411
               

               
Cow position:
               
chr25:27534745-27535072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
23, 45
               

               
Conread position:
               
80-414
               

               
Cow position:
               
chr25:14513299-14512946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 138
               

               
Conread position:
               
80-427
               

               
Cow position:
               
chr25:22575355-22575696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
71, 31
               

               
Conread position:
               
80-442
               

               
Cow position:
               
chr25:20076672-20076307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
24, 48
               

               
Conread position:
               
91-291
               

               
Cow position:
               
chr25:19584533-19584326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
91-442
               

               
Cow position:
               
chr25:11661648-11662010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 124
               

               
Conread position:
               
99-339
               

               
Cow position:
               
chr25:31065341-31065110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
99-456
               

               
Cow position:
               
chr25:9989956-9990294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 108
               

               
Conread position:
               
111-341
               

               
Cow position:
               
chr25:4948101-4947871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
67, 7
               

               
Conread position:
               
111-456
               

               
Cow position:
               
chr25:6473946-6474303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
112-369
               

               
Cow position:
               
chr25:36872500-36872242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
42, 96
               

               
Conread position:
               
113-406
               

               
Cow position:
               
chr25:5474089-5474383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
15, 7
               

               
Conread position:
               
114-363
               

               
Cow position:
               
chr25:30817033-30816772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
114-441
               

               
Cow position:
               
chr25:19129995-19129664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
115-247
               

               
Cow position:
               
chr25:24115175-24115310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
115-261
               

               
Cow position:
               
chr25:14419839-14419693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 37
               

               
Conread position:
               
115-265
               

               
Cow position:
               
chr25:20203048-20202901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
115-266
               

               
Cow position:
               
chr25:9573995-9574143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 87
               

               
Conread position:
               
115-266
               

               
Cow position:
               
chr25:36872915-36873069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
115-273
               

               
Cow position:
               
chr25:33101472-33101625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
115-281
               

               
Cow position:
               
chr25:13823579-13823747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
34, 94
               

               
Conread position:
               
115-288
               

               
Cow position:
               
chr25:13223038-13222865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
115-290
               

               
Cow position:
               
chr25:9107390-9107560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
63, 28
               

               
Conread position:
               
115-290
               

               
Cow position:
               
chr25:35339050-35339227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
115-292
               

               
Cow position:
               
chr25:26072423-26072596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
115-303
               

               
Cow position:
               
chr25:18760571-18760755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
64, 39
               

               
Conread position:
               
115-307
               

               
Cow position:
               
chr25:17403616-17403432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
115-318
               

               
Cow position:
               
chr25:432905-433112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
115-322
               

               
Cow position:
               
chr25:12305419-12305209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
24, 97
               

               
Conread position:
               
115-326
               

               
Cow position:
               
chr25:26306063-26306277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
14, 95
               

               
Conread position:
               
115-364
               

               
Cow position:
               
chr25:17119884-17119630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
13, 96
               

               
Conread position:
               
115-364
               

               
Cow position:
               
chr25:25716785-25716537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
115-370
               

               
Cow position:
               
chr25:33557406-33557153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
115-377
               

               
Cow position:
               
chr25:18201786-18202054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
115-384
               

               
Cow position:
               
chr25:4245805-4245555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
115-384
               

               
Cow position:
               
chr25:19363920-19364193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
115-389
               

               
Cow position:
               
chr25:20523096-20523370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 92
               

               
Conread position:
               
115-391
               

               
Cow position:
               
chr25:22756752-22756467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
115-408
               

               
Cow position:
               
chr25:7380697-7380999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 96
               

               
Conread position:
               
115-409
               

               
Cow position:
               
chr25:20008274-20007977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
115-411
               

               
Cow position:
               
chr25:26679367-26679066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 95
               

               
Conread position:
               
115-411
               

               
Cow position:
               
chr25:41150824-41151122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 99
               

               
Conread position:
               
115-412
               

               
Cow position:
               
chr25:23779193-23779487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
62, 37
               

               
Conread position:
               
115-412
               

               
Cow position:
               
chr25:34978728-34979029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 28
               

               
Conread position:
               
115-414
               

               
Cow position:
               
chr25:13443267-13443569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 96
               

               
Conread position:
               
115-414
               

               
Cow position:
               
chr25:21893474-21893173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
115-416
               

               
Cow position:
               
chr25:1763224-1762933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
115-425
               

               
Cow position:
               
chr25:23828990-23829296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
115-436
               

               
Cow position:
               
chr25:32277474-32277788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
62, 15
               

               
Conread position:
               
115-438
               

               
Cow position:
               
chr25:18720987-18721296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
115-441
               

               
Cow position:
               
chr25:18988520-18988187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 37
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:3992920-3992600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 95
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:7306430-7306108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 94
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:8120921-8120586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 95
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:13272709-13272379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:13380458-13380806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:15715012-15714691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:17704879-17704559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 31
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:19679492-19679152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 46
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:24573202-24572884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 30
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:24669312-24669621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:26701160-26700848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 15
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:28187806-28188139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:33550651-33550315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 177
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:35348046-35347714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 98
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:36535277-36535626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
18, 300
               

               
Conread position:
               
115-442
               

               
Cow position:
               
chr25:38958092-38957780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 25
               

               
Conread position:
               
115-449
               

               
Cow position:
               
chr25:14833528-14833853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 24
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr25:788397-788068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 92
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr25:2624934-2624605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr25:5846665-5847007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
13, 98
               

               
Conread position:
               
115-452
               

               
Cow position:
               
chr25:36082007-36081673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
115-454
               

               
Cow position:
               
chr25:11316042-11315709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 93
               

               
Conread position:
               
115-456
               

               
Cow position:
               
chr25:22203557-22203894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 89
               

               
Conread position:
               
115-456
               

               
Cow position:
               
chr25:33663769-33664100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
307, 62
               

               
Conread position:
               
116-325
               

               
Cow position:
               
chr25:36717055-36716852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
116-409
               

               
Cow position:
               
chr25:23244865-23245169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
116-412
               

               
Cow position:
               
chr25:30852904-30852594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
62, 91
               

               
Conread position:
               
116-442
               

               
Cow position:
               
chr25:14791893-14791562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 93
               

               
Conread position:
               
116-446
               

               
Cow position:
               
chr25:7750588-7750256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
117-248
               

               
Cow position:
               
chr25:23323627-23323495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 91
               

               
Conread position:
               
117-260
               

               
Cow position:
               
chr25:8347791-8347645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
117-290
               

               
Cow position:
               
chr25:6259022-6258846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
117-295
               

               
Cow position:
               
chr25:18288632-18288810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
117-320
               

               
Cow position:
               
chr25:36019533-36019733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
117-343
               

               
Cow position:
               
chr25:13621224-13621447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
173, 23
               

               
Conread position:
               
117-395
               

               
Cow position:
               
chr25:38421803-38421534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
37, 93
               

               
Conread position:
               
117-409
               

               
Cow position:
               
chr25:33978081-33978375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
117-412
               

               
Cow position:
               
chr25:9269478-9269198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 28
               

               
Conread position:
               
117-416
               

               
Cow position:
               
chr25:11829775-11830067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
27, 105
               

               
Conread position:
               
117-442
               

               
Cow position:
               
chr25:10643178-10643500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 11
               

               
Conread position:
               
117-442
               

               
Cow position:
               
chr25:36762240-36761916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 21
               

               
Conread position:
               
117-452
               

               
Cow position:
               
chr25:26087656-26087315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 35
               

               
Conread position:
               
117-452
               

               
Cow position:
               
chr25:36746310-36746646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
118-375
               

               
Cow position:
               
chr25:33457866-33457604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 12
               

               
Conread position:
               
118-407
               

               
Cow position:
               
chr25:13387947-13387648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
12, 93
               

               
Conread position:
               
118-442
               

               
Cow position:
               
chr25:17658747-17658423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 90
               

               
Conread position:
               
119-411
               

               
Cow position:
               
chr25:13709149-13708851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 26
               

               
Conread position:
               
119-442
               

               
Cow position:
               
chr25:11956940-11956635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
119-442
               

               
Cow position:
               
chr25:19478806-19478498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 24
               

               
Conread position:
               
119-452
               

               
Cow position:
               
chr25:21192805-21193144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
46, 82
               

               
Conread position:
               
122-368
               

               
Cow position:
               
chr25:11432813-11433072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
123-322
               

               
Cow position:
               
chr25:7012558-7012361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
23, 87
               

               
Conread position:
               
124-357
               

               
Cow position:
               
chr25:12252679-12252920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
124-412
               

               
Cow position:
               
chr25:9002799-9002512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
55, 62
               

               
Conread position:
               
124-442
               

               
Cow position:
               
chr25:10504211-10504525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 84
               

               
Conread position:
               
124-442
               

               
Cow position:
               
chr25:13672529-13672198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
124-442
               

               
Cow position:
               
chr25:14196993-14196666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 56
               

               
Conread position:
               
124-442
               

               
Cow position:
               
chr25:27801398-27801100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
190, 30
               

               
Conread position:
               
124-452
               

               
Cow position:
               
chr25:15254216-15254531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 86
               

               
Conread position:
               
124-456
               

               
Cow position:
               
chr25:40904700-40905033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
22, 84
               

               
Conread position:
               
125-323
               

               
Cow position:
               
chr25:5920206-5920016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
52, 18
               

               
Conread position:
               
125-418
               

               
Cow position:
               
chr25:6682932-6683230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 84
               

               
Conread position:
               
125-442
               

               
Cow position:
               
chr25:16867368-16867039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
126-266
               

               
Cow position:
               
chr25:30624955-30625096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 82
               

               
Conread position:
               
126-276
               

               
Cow position:
               
chr25:3744616-3744769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
23, 86
               

               
Conread position:
               
126-288
               

               
Cow position:
               
chr25:15463715-15463552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
22, 37
               

               
Conread position:
               
126-291
               

               
Cow position:
               
chr25:9939135-9939295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
126-296
               

               
Cow position:
               
chr25:28597482-28597655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
126-297
               

               
Cow position:
               
chr25:22348335-22348508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
126-321
               

               
Cow position:
               
chr25:1840452-1840255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
126-322
               

               
Cow position:
               
chr25:36021449-36021256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
126-325
               

               
Cow position:
               
chr25:11679265-11679074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
126-349
               

               
Cow position:
               
chr25:35052494-35052713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
29, 90
               

               
Conread position:
               
126-358
               

               
Cow position:
               
chr25:26059618-26059396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
126-377
               

               
Cow position:
               
chr25:1823968-1824223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 83
               

               
Conread position:
               
126-395
               

               
Cow position:
               
chr25:31230120-31230381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
196, 53
               

               
Conread position:
               
126-396
               

               
Cow position:
               
chr25:7673425-7673133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
126-430
               

               
Cow position:
               
chr25:18156162-18156467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 38
               

               
Conread position:
               
126-438
               

               
Cow position:
               
chr25:36017661-36017353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 84
               

               
Conread position:
               
126-441
               

               
Cow position:
               
chr25:20785461-20785773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 63
               

               
Conread position:
               
126-442
               

               
Cow position:
               
chr25:1838368-1838049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 81
               

               
Conread position:
               
126-442
               

               
Cow position:
               
chr25:7008038-7007726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 28
               

               
Conread position:
               
126-442
               

               
Cow position:
               
chr25:10407286-10407608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
11, 82
               

               
Conread position:
               
126-442
               

               
Cow position:
               
chr25:23917968-23917650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
126-446
               

               
Cow position:
               
chr25:7581300-7581622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 85
               

               
Conread position:
               
126-452
               

               
Cow position:
               
chr25:16319014-16319332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
126-452
               

               
Cow position:
               
chr25:18294186-18294513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
27, 82
               

               
Conread position:
               
126-452
               

               
Cow position:
               
chr25:21245478-21245807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 19
               

               
Conread position:
               
126-452
               

               
Cow position:
               
chr25:22531409-22531087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
126-455
               

               
Cow position:
               
chr25:34170074-34169752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 82
               

               
Conread position:
               
127-365
               

               
Cow position:
               
chr25:13325703-13325464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
128-435
               

               
Cow position:
               
chr25:12116875-12117175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 24
               

               
Conread position:
               
129-386
               

               
Cow position:
               
chr25:24202888-24203129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
48, 78
               

               
Conread position:
               
129-452
               

               
Cow position:
               
chr25:4547595-4547920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 14
               

               
Conread position:
               
130-283
               

               
Cow position:
               
chr25:26161093-26160935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
130-322
               

               
Cow position:
               
chr25:23505174-23504980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
130-343
               

               
Cow position:
               
chr25:12807162-12806956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
130-347
               

               
Cow position:
               
chr25:23745384-23745165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
130-396
               

               
Cow position:
               
chr25:12609464-12609198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
130-401
               

               
Cow position:
               
chr25:30619187-30618914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
130-425
               

               
Cow position:
               
chr25:26224905-26225218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
130-435
               

               
Cow position:
               
chr25:17190623-17190927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
24, 81
               

               
Conread position:
               
130-440
               

               
Cow position:
               
chr25:22179040-22178733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
130-441
               

               
Cow position:
               
chr25:20023262-20023582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
130-442
               

               
Cow position:
               
chr25:12319231-12319528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
130-442
               

               
Cow position:
               
chr25:21951254-21950936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
131-284
               

               
Cow position:
               
chr25:17919098-17918943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
131-294
               

               
Cow position:
               
chr25:19421952-19421783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
131-340
               

               
Cow position:
               
chr25:26052026-26051816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
131-370
               

               
Cow position:
               
chr25:34241982-34242218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
131-374
               

               
Cow position:
               
chr25:9843299-9843052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 77
               

               
Conread position:
               
131-379
               

               
Cow position:
               
chr25:11051649-11051400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
47, 23
               

               
Conread position:
               
131-421
               

               
Cow position:
               
chr25:27532551-27532845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
131-456
               

               
Cow position:
               
chr25:18906006-18905677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
132-421
               

               
Cow position:
               
chr25:35826159-35826446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
22, 195
               

               
Conread position:
               
132-430
               

               
Cow position:
               
chr25:16065014-16064713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
133-316
               

               
Cow position:
               
chr25:11038475-11038283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
23, 76
               

               
Conread position:
               
133-327
               

               
Cow position:
               
chr25:12195111-12195289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
134-338
               

               
Cow position:
               
chr25:23817721-23817923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 73
               

               
Conread position:
               
134-441
               

               
Cow position:
               
chr25:21267107-21266821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
19, 46
               

               
Conread position:
               
135-322
               

               
Cow position:
               
chr25:34788137-34788330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
72, 10
               

               
Conread position:
               
135-390
               

               
Cow position:
               
chr25:27531152-27531413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
23, 73
               

               
Conread position:
               
144-360
               

               
Cow position:
               
chr25:14809382-14809177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
34, 63
               

               
Conread position:
               
144-403
               

               
Cow position:
               
chr25:20216940-20216679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
145-380
               

               
Cow position:
               
chr25:14157733-14157491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
145-442
               

               
Cow position:
               
chr25:2136458-2136161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
32, 68
               

               
Conread position:
               
145-442
               

               
Cow position:
               
chr25:6227143-6226851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
145-442
               

               
Cow position:
               
chr25:21894777-21895076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
145-442
               

               
Cow position:
               
chr25:25051269-25051574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
145-442
               

               
Cow position:
               
chr25:26238970-26238681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 62
               

               
Conread position:
               
145-442
               

               
Cow position:
               
chr25:32191762-32191479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
146-442
               

               
Cow position:
               
chr25:6961046-6961340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 63
               

               
Conread position:
               
146-452
               

               
Cow position:
               
chr25:10949473-10949756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
12, 46
               

               
Conread position:
               
146-452
               

               
Cow position:
               
chr25:30279101-30279407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
146-456
               

               
Cow position:
               
chr25:26524064-26523755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
8, 34
               

               
Conread position:
               
147-320
               

               
Cow position:
               
chr25:6133985-6134157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
31, 59
               

               
Conread position:
               
147-441
               

               
Cow position:
               
chr25:25861245-25861549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
148-442
               

               
Cow position:
               
chr25:10217944-10218240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
31, 59
               

               
Conread position:
               
149-442
               

               
Cow position:
               
chr25:20133210-20133505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 58
               

               
Conread position:
               
149-442
               

               
Cow position:
               
chr25:40321184-40321483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 56
               

               
Conread position:
               
150-407
               

               
Cow position:
               
chr25:38982196-38981946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
151-440
               

               
Cow position:
               
chr25:21208868-21209136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
152-267
               

               
Cow position:
               
chr25:30064812-30064927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
152-274
               

               
Cow position:
               
chr25:15218233-15218115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
152-281
               

               
Cow position:
               
chr25:4221502-4221631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
152-285
               

               
Cow position:
               
chr25:9615938-9615805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
152-288
               

               
Cow position:
               
chr25:35090468-35090608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
152-289
               

               
Cow position:
               
chr25:31762507-31762645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
152-291
               

               
Cow position:
               
chr25:36840497-36840358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
152-305
               

               
Cow position:
               
chr25:447165-447318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
152-318
               

               
Cow position:
               
chr25:33555706-33555545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
152-322
               

               
Cow position:
               
chr25:7379046-7379217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
152-358
               

               
Cow position:
               
chr25:7799648-7799450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
26, 43
               

               
Conread position:
               
152-390
               

               
Cow position:
               
chr25:22730929-22730692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
152-397
               

               
Cow position:
               
chr25:6688046-6687802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
25, 55
               

               
Conread position:
               
152-399
               

               
Cow position:
               
chr25:21668350-21668096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
27, 57
               

               
Conread position:
               
152-407
               

               
Cow position:
               
chr25:448064-448325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 55
               

               
Conread position:
               
152-412
               

               
Cow position:
               
chr25:4521740-4521997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
152-412
               

               
Cow position:
               
chr25:18564587-18564326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
152-438
               

               
Cow position:
               
chr25:7641349-7641640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
152-438
               

               
Cow position:
               
chr25:41366070-41366355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
152-441
               

               
Cow position:
               
chr25:20461203-20460934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
152-442
               

               
Cow position:
               
chr25:11585619-11585328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 56
               

               
Conread position:
               
152-442
               

               
Cow position:
               
chr25:36036678-36036970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
152-452
               

               
Cow position:
               
chr25:16921696-16921994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 55
               

               
Conread position:
               
152-452
               

               
Cow position:
               
chr25:22315306-22315001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 55
               

               
Conread position:
               
154-280
               

               
Cow position:
               
chr25:13503531-13503406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
154-313
               

               
Cow position:
               
chr25:18541847-18542007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
154-333
               

               
Cow position:
               
chr25:36120596-36120427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
23, 7
               

               
Conread position:
               
154-348
               

               
Cow position:
               
chr25:6928409-6928607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
154-390
               

               
Cow position:
               
chr25:33686586-33686820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
154-403
               

               
Cow position:
               
chr25:8961869-8961620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 54
               

               
Conread position:
               
154-430
               

               
Cow position:
               
chr25:22750908-22751187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
156-321
               

               
Cow position:
               
chr25:33773684-33773846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
156-414
               

               
Cow position:
               
chr25:9349187-9349435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
159-387
               

               
Cow position:
               
chr25:14256000-14255766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
21, 51
               

               
Conread position:
               
161-390
               

               
Cow position:
               
chr25:20019914-20020134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
136, 16
               

               
Conread position:
               
161-396
               

               
Cow position:
               
chr25:5756776-5756552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
161-439
               

               
Cow position:
               
chr25:33691650-33691366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
162-442
               

               
Cow position:
               
chr25:16714178-16714464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 45
               

               
Conread position:
               
164-411
               

               
Cow position:
               
chr25:15377415-15377166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
165-409
               

               
Cow position:
               
chr25:12840631-12840887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
99, 41
               

               
Conread position:
               
166-289
               

               
Cow position:
               
chr25:10359712-10359590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
11, 41
               

               
Conread position:
               
166-421
               

               
Cow position:
               
chr25:26136736-26136996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
166-447
               

               
Cow position:
               
chr25:41387440-41387712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
13, 40
               

               
Conread position:
               
167-365
               

               
Cow position:
               
chr25:14118177-14117977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
167-388
               

               
Cow position:
               
chr25:24052049-24051824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
127, 10
               

               
Conread position:
               
167-428
               

               
Cow position:
               
chr25:15440691-15440959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
167-442
               

               
Cow position:
               
chr25:22296940-22297207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
10, 40
               

               
Conread position:
               
168-286
               

               
Cow position:
               
chr25:33311241-33311360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
168-332
               

               
Cow position:
               
chr25:7023253-7023091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
168-355
               

               
Cow position:
               
chr25:13384536-13384348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 42
               

               
Conread position:
               
168-388
               

               
Cow position:
               
chr25:13569092-13569312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
9, 27
               

               
Conread position:
               
168-417
               

               
Cow position:
               
chr25:13471817-13472058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
10, 31
               

               
Conread position:
               
168-421
               

               
Cow position:
               
chr25:22909772-22910016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
168-439
               

               
Cow position:
               
chr25:14570456-14570181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
126, 9
               

               
Conread position:
               
168-439
               

               
Cow position:
               
chr25:26848957-26849235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
168-441
               

               
Cow position:
               
chr25:41363065-41363339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
13, 39
               

               
Conread position:
               
168-442
               

               
Cow position:
               
chr25:38135835-38135558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 39
               

               
Conread position:
               
168-456
               

               
Cow position:
               
chr25:11131669-11131377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
10, 39
               

               
Conread position:
               
169-378
               

               
Cow position:
               
chr25:3373298-3373501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
8, 38
               

               
Conread position:
               
169-441
               

               
Cow position:
               
chr25:61734-61468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 39
               

               
Conread position:
               
169-442
               

               
Cow position:
               
chr25:29826494-29826221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
170-437
               

               
Cow position:
               
chr25:12817448-12817187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
170-437
               

               
Cow position:
               
chr25:29136077-29136345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
170-442
               

               
Cow position:
               
chr25:8226186-8225907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
170-442
               

               
Cow position:
               
chr25:30319370-30319639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
171-409
               

               
Cow position:
               
chr25:40956903-40957148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
171-417
               

               
Cow position:
               
chr25:18161367-18161122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
123, 19
               

               
Conread position:
               
172-442
               

               
Cow position:
               
chr25:6978060-6977788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
172-442
               

               
Cow position:
               
chr25:12293668-12293941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
170, 5
               

               
Conread position:
               
173-364
               

               
Cow position:
               
chr25:7035636-7035440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
7, 34
               

               
Conread position:
               
174-316
               

               
Cow position:
               
chr25:7078081-7077941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
174-437
               

               
Cow position:
               
chr25:5834168-5834438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
5, 102
               

               
Conread position:
               
175-446
               

               
Cow position:
               
chr25:24452083-24452362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
175-447
               

               
Cow position:
               
chr25:33786012-33786280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
232, 11
               

               
Conread position:
               
176-374
               

               
Cow position:
               
chr25:7013652-7013848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
191, 31
               

               
Conread position:
               
176-394
               

               
Cow position:
               
chr25:11066067-11066293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
145, 33
               

               
Conread position:
               
177-396
               

               
Cow position:
               
chr25:17144503-17144277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
98, 29
               

               
Conread position:
               
177-411
               

               
Cow position:
               
chr25:22736189-22735961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
177-415
               

               
Cow position:
               
chr25:22179936-22180169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
177-440
               

               
Cow position:
               
chr25:37594481-37594226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
151, 27
               

               
Conread position:
               
179-359
               

               
Cow position:
               
chr25:22317754-22317571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 27
               

               
Conread position:
               
179-374
               

               
Cow position:
               
chr25:20157224-20157423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
179-391
               

               
Cow position:
               
chr25:20664209-20664439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 30
               

               
Conread position:
               
179-409
               

               
Cow position:
               
chr25:17991514-17991743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 27
               

               
Conread position:
               
179-411
               

               
Cow position:
               
chr25:6996857-6996620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
145, 25
               

               
Conread position:
               
179-416
               

               
Cow position:
               
chr25:5921017-5920771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
179-426
               

               
Cow position:
               
chr25:20047581-20047328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
100, 27
               

               
Conread position:
               
179-440
               

               
Cow position:
               
chr25:20402636-20402908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
123, 27
               

               
Conread position:
               
179-441
               

               
Cow position:
               
chr25:17566660-17566398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
145, 27
               

               
Conread position:
               
179-442
               

               
Cow position:
               
chr25:17342531-17342259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 27
               

               
Conread position:
               
179-442
               

               
Cow position:
               
chr25:17914853-17914590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
144, 27
               

               
Conread position:
               
179-442
               

               
Cow position:
               
chr25:20348942-20348668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
90, 27
               

               
Conread position:
               
179-442
               

               
Cow position:
               
chr25:21289418-21289150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
142, 16
               

               
Conread position:
               
179-442
               

               
Cow position:
               
chr25:23324296-23324554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 30
               

               
Conread position:
               
179-442
               

               
Cow position:
               
chr25:33959179-33959454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
70, 29
               

               
Conread position:
               
179-442
               

               
Cow position:
               
chr25:35612240-35612487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
179-456
               

               
Cow position:
               
chr25:6463958-6464233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
145, 26
               

               
Conread position:
               
179-456
               

               
Cow position:
               
chr25:27821486-27821207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 27
               

               
Conread position:
               
180-364
               

               
Cow position:
               
chr25:7817054-7816869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
144, 26
               

               
Conread position:
               
180-412
               

               
Cow position:
               
chr25:2046488-2046722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 23
               

               
Conread position:
               
180-437
               

               
Cow position:
               
chr25:18894657-18894908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
134, 26
               

               
Conread position:
               
180-440
               

               
Cow position:
               
chr25:26134115-26133850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
144, 121
               

               
Conread position:
               
181-384
               

               
Cow position:
               
chr25:15634398-15634611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
181-395
               

               
Cow position:
               
chr25:7010901-7011119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
129, 25
               

               
Conread position:
               
181-411
               

               
Cow position:
               
chr25:41132289-41132519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
181-417
               

               
Cow position:
               
chr25:19317336-19317094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
105, 25
               

               
Conread position:
               
181-426
               

               
Cow position:
               
chr25:41107825-41107582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
181-442
               

               
Cow position:
               
chr25:3145915-3145650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
146, 25
               

               
Conread position:
               
181-442
               

               
Cow position:
               
chr25:23053628-23053366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
185-406
               

               
Cow position:
               
chr25:24651382-24651608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
26, 128
               

               
Conread position:
               
185-437
               

               
Cow position:
               
chr25:26259421-26259680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
98, 9
               

               
Conread position:
               
185-446
               

               
Cow position:
               
chr25:38425428-38425171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
133, 21
               

               
Conread position:
               
186-407
               

               
Cow position:
               
chr25:12081256-12081481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
126, 20
               

               
Conread position:
               
188-355
               

               
Cow position:
               
chr25:9316086-9315915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
188-421
               

               
Cow position:
               
chr25:12260825-12261065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
188-432
               

               
Cow position:
               
chr25:6885907-6886159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
133, 18
               

               
Conread position:
               
188-439
               

               
Cow position:
               
chr25:9847852-9847597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
138, 18
               

               
Conread position:
               
188-439
               

               
Cow position:
               
chr25:23406774-23407029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
82, 18
               

               
Conread position:
               
188-442
               

               
Cow position:
               
chr25:25753932-25754187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
68, 19
               

               
Conread position:
               
189-410
               

               
Cow position:
               
chr25:8485427-8485656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
66, 87
               

               
Conread position:
               
189-411
               

               
Cow position:
               
chr25:18487731-18487503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
190-390
               

               
Cow position:
               
chr25:16570664-16570474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
73, 16
               

               
Conread position:
               
190-439
               

               
Cow position:
               
chr25:29312271-29312530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
192-337
               

               
Cow position:
               
chr25:16361612-16361756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
194-370
               

               
Cow position:
               
chr25:26642645-26642462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 12
               

               
Conread position:
               
195-441
               

               
Cow position:
               
chr25:2194988-2194756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
196-369
               

               
Cow position:
               
chr25:24504445-24504617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
122, 9
               

               
Conread position:
               
197-390
               

               
Cow position:
               
chr25:12174399-12174585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
168, 9
               

               
Conread position:
               
197-442
               

               
Cow position:
               
chr25:5836902-5837156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
87, 9
               

               
Conread position:
               
200-365
               

               
Cow position:
               
chr25:13139877-13139704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
203-442
               

               
Cow position:
               
chr25:1735271-1735506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
107, 9
               

               
Conread position:
               
205-407
               

               
Cow position:
               
chr25:9956990-9957198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 66
               

               
Conread position:
               
209-346
               

               
Cow position:
               
chr25:13118047-13118188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
212-429
               

               
Cow position:
               
chr25:20496573-20496357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
115, 54
               

               
Conread position:
               
213-390
               

               
Cow position:
               
chr25:12997633-12997451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 13
               

               
Conread position:
               
214-414
               

               
Cow position:
               
chr25:9754057-9754254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
102, 73
               

               
Conread position:
               
214-442
               

               
Cow position:
               
chr25:5341692-5341460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
111, 27
               

               
Conread position:
               
215-411
               

               
Cow position:
               
chr25:8560907-8560705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
57, 181
               

               
Conread position:
               
215-411
               

               
Cow position:
               
chr25:11666686-11666490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
150, 89
               

               
Conread position:
               
215-427
               

               
Cow position:
               
chr25:16555804-16555583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
74, 161
               

               
Conread position:
               
216-349
               

               
Cow position:
               
chr25:30450082-30449942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
216-362
               

               
Cow position:
               
chr25:7441066-7440919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
216-442
               

               
Cow position:
               
chr25:12239110-12239338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
104, 55
               

               
Conread position:
               
217-409
               

               
Cow position:
               
chr25:11319038-11318850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
135, 71
               

               
Conread position:
               
218-412
               

               
Cow position:
               
chr25:35333193-35332995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
102, 22
               

               
Conread position:
               
218-441
               

               
Cow position:
               
chr25:36779536-36779303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
219-452
               

               
Cow position:
               
chr25:14266484-14266704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
72, 52
               

               
Conread position:
               
220-432
               

               
Cow position:
               
chr25:20211047-20211261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
101, 75
               

               
Conread position:
               
221-411
               

               
Cow position:
               
chr25:6891503-6891687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
121, 48
               

               
Conread position:
               
222-441
               

               
Cow position:
               
chr25:15319951-15319731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
102, 81
               

               
Conread position:
               
222-442
               

               
Cow position:
               
chr25:25827502-25827272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
223-442
               

               
Cow position:
               
chr25:9023663-9023454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 76
               

               
Conread position:
               
223-446
               

               
Cow position:
               
chr25:9642388-9642160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 150
               

               
Conread position:
               
224-442
               

               
Cow position:
               
chr25:9396475-9396260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
7, 68
               

               
Conread position:
               
225-442
               

               
Cow position:
               
chr25:35340359-35340142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
225-456
               

               
Cow position:
               
chr25:18155627-18155392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
99, 75
               

               
Conread position:
               
228-442
               

               
Cow position:
               
chr25:26269912-26270124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
137, 192
               

               
Conread position:
               
229-373
               

               
Cow position:
               
chr25:13640405-13640260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
95, 19
               

               
Conread position:
               
229-437
               

               
Cow position:
               
chr25:22112987-22112780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 72
               

               
Conread position:
               
231-409
               

               
Cow position:
               
chr25:11054926-11054746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
95, 55
               

               
Conread position:
               
231-417
               

               
Cow position:
               
chr25:21042408-21042215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
62, 145
               

               
Conread position:
               
231-421
               

               
Cow position:
               
chr25:31705025-31704821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
231-442
               

               
Cow position:
               
chr25:31732712-31732926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
93, 56
               

               
Conread position:
               
231-456
               

               
Cow position:
               
chr25:10330390-10330606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
46, 34
               

               
Conread position:
               
232-396
               

               
Cow position:
               
chr25:22332784-22332615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
88, 55
               

               
Conread position:
               
232-438
               

               
Cow position:
               
chr25:5271766-5271556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
91, 55
               

               
Conread position:
               
233-415
               

               
Cow position:
               
chr25:4860291-4860468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
61, 95
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr25:5791781-5791997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
234-442
               

               
Cow position:
               
chr25:36033457-36033246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
236-411
               

               
Cow position:
               
chr25:6121752-6121929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
236-436
               

               
Cow position:
               
chr25:38972848-38972648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
239-406
               

               
Cow position:
               
chr25:32587864-32588036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
79, 49
               

               
Conread position:
               
239-429
               

               
Cow position:
               
chr25:4002816-4002619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
239-437
               

               
Cow position:
               
chr25:23323214-23323017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
79, 42
               

               
Conread position:
               
239-442
               

               
Cow position:
               
chr25:9961159-9961367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
81, 42
               

               
Conread position:
               
239-442
               

               
Cow position:
               
chr25:12824003-12824204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
77, 160
               

               
Conread position:
               
239-442
               

               
Cow position:
               
chr25:13736299-13736501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
133, 52
               

               
Conread position:
               
239-452
               

               
Cow position:
               
chr25:5515028-5514806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
239-452
               

               
Cow position:
               
chr25:35625170-35625376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
240-442
               

               
Cow position:
               
chr25:12204489-12204280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 170
               

               
Conread position:
               
241-426
               

               
Cow position:
               
chr25:26058597-26058411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
83, 34
               

               
Conread position:
               
242-407
               

               
Cow position:
               
chr25:16001514-16001682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
78, 43
               

               
Conread position:
               
242-418
               

               
Cow position:
               
chr25:36138638-36138811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
169, 24
               

               
Conread position:
               
242-427
               

               
Cow position:
               
chr25:23389267-23389459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
54, 45
               

               
Conread position:
               
242-452
               

               
Cow position:
               
chr25:13642301-13642516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
78, 45
               

               
Conread position:
               
244-412
               

               
Cow position:
               
chr25:14945441-14945615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
246-438
               

               
Cow position:
               
chr25:35345038-35344852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
246-442
               

               
Cow position:
               
chr25:3983047-3982854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
246-442
               

               
Cow position:
               
chr25:8918269-8918465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 41
               

               
Conread position:
               
248-356
               

               
Cow position:
               
chr25:12691673-12691790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 32
               

               
Conread position:
               
248-442
               

               
Cow position:
               
chr25:10138099-10137908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
54, 120
               

               
Conread position:
               
249-455
               

               
Cow position:
               
chr25:7329553-7329342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 208
               

               
Conread position:
               
250-425
               

               
Cow position:
               
chr25:11978704-11978877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
172, 59
               

               
Conread position:
               
252-441
               

               
Cow position:
               
chr25:12520963-12521150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
64, 27
               

               
Conread position:
               
255-431
               

               
Cow position:
               
chr25:26938236-26938409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 35
               

               
Conread position:
               
256-411
               

               
Cow position:
               
chr25:33267723-33267561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
256-442
               

               
Cow position:
               
chr25:15694979-15694794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 152
               

               
Conread position:
               
259-452
               

               
Cow position:
               
chr25:12899753-12899554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
19, 43
               

               
Conread position:
               
262-441
               

               
Cow position:
               
chr25:20395183-20395012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
276-430
               

               
Cow position:
               
chr25:23570926-23571079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
95, 16
               

               
Conread position:
               
276-456
               

               
Cow position:
               
chr25:8347488-8347305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
279-441
               

               
Cow position:
               
chr25:6424611-6424777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
280-411
               

               
Cow position:
               
chr25:2111044-2110915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
281-405
               

               
Cow position:
               
chr25:11823522-11823646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 118
               

               
Conread position:
               
282-442
               

               
Cow position:
               
chr25:10365779-10365942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 144
               

               
Conread position:
               
283-442
               

               
Cow position:
               
chr25:32453427-32453588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
293-410
               

               
Cow position:
               
chr25:30064926-30065041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
293-442
               

               
Cow position:
               
chr25:35110163-35110320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
293-445
               

               
Cow position:
               
chr25:6255974-6256132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
23, 135
               

               
Conread position:
               
294-452
               

               
Cow position:
               
chr25:36026970-36026807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 121
               

               
Conread position:
               
312-442
               

               
Cow position:
               
chr25:18448777-18448647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
320-438
               

               
Cow position:
               
chr25:24167972-24168089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
322-437
               

               
Cow position:
               
chr25:11542841-11542725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
331-440
               

               
Cow position:
               
chr25:22340956-22340850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
334-442
               

               
Cow position:
               
chr25:10010803-10010912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
334-442
               

               
Cow position:
               
chr25:18934957-18935064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
88, 78
               
Show alignments to all cow chromosomes.