Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-rlin34_d7.5
        

               Conread position:
               2-411
               

               Cow position:
               chrX:25815597-25816033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               309
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               15, 6
               

               Conread position:
               7-440
               

               Cow position:
               chrX:34544058-34543627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 112
               

               Conread position:
               13-449
               

               Cow position:
               chrX:44731863-44731426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               409, 0
               

               Conread position:
               43-442
               

               Cow position:
               chrX:7337078-7336667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               70, 43
               

               Conread position:
               47-442
               

               Cow position:
               chrX:42011515-42011118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               272
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               83, 30
               

               Conread position:
               49-405
               

               Cow position:
               chrX:2523447-2523780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               255
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               52, 7
               

               Conread position:
               49-430
               

               Cow position:
               chrX:40789440-40789055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               264
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               13, 63
               

               Conread position:
               49-442
               

               Cow position:
               chrX:45502391-45501987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 169
               

               Conread position:
               54-324
               

               Cow position:
               chrX:39353022-39352740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               52, 163
               

               Conread position:
               55-284
               

               Cow position:
               chrX:32910346-32910102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               26, 16
               

               Conread position:
               59-279
               

               Cow position:
               chrX:39180003-39180230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               41, 16
               

               Conread position:
               59-430
               

               Cow position:
               chrX:24287712-24288077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               120, 7
               

               Conread position:
               59-433
               

               Cow position:
               chrX:20584555-20584166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 16
               

               Conread position:
               59-440
               

               Cow position:
               chrX:1499899-1499510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 159
               

               Conread position:
               59-442
               

               Cow position:
               chrX:30133092-30133490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 33
               

               Conread position:
               60-440
               

               Cow position:
               chrX:34792080-34792470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 18
               

               Conread position:
               60-442
               

               Cow position:
               chrX:34753948-34754353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               279
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               11, 57
               

               Conread position:
               62-268
               

               Cow position:
               chrX:23089079-23088870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               8, 151
               

               Conread position:
               62-325
               

               Cow position:
               chrX:11325865-11326141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               207
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               21, 159
               

               Conread position:
               63-287
               

               Cow position:
               chrX:27668720-27668963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               18, 163
               

               Conread position:
               63-407
               

               Cow position:
               chrX:28877953-28878299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               17, 62
               

               Conread position:
               63-408
               

               Cow position:
               chrX:6488805-6488446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               263
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               42, 15
               

               Conread position:
               63-439
               

               Cow position:
               chrX:25338405-25338021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               262
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               114, 70
               

               Conread position:
               64-411
               

               Cow position:
               chrX:27287519-27287867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               47, 60
               

               Conread position:
               64-421
               

               Cow position:
               chrX:15305076-15305428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               246
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               68, 41
               

               Conread position:
               64-442
               

               Cow position:
               chrX:7722215-7721823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 152
               

               Conread position:
               64-442
               

               Cow position:
               chrX:13177244-13177626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 157
               

               Conread position:
               64-448
               

               Cow position:
               chrX:2786344-2786716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               252
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               18, 48
               

               Conread position:
               65-279
               

               Cow position:
               chrX:24054900-24054674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               41, 148
               

               Conread position:
               65-291
               

               Cow position:
               chrX:4467188-4466958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               45, 10
               

               Conread position:
               65-364
               

               Cow position:
               chrX:6559214-6559531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               220
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               11, 159
               

               Conread position:
               65-416
               

               Cow position:
               chrX:161639-161278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 152
               

               Conread position:
               65-421
               

               Cow position:
               chrX:25714014-25713654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               248
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               64, 46
               

               Conread position:
               65-442
               

               Cow position:
               chrX:18694713-18695081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 37
               

               Conread position:
               66-223
               

               Cow position:
               chrX:40263904-40263740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               40, 13
               

               Conread position:
               66-356
               

               Cow position:
               chrX:4152803-4153113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               12, 153
               

               Conread position:
               66-360
               

               Cow position:
               chrX:4289674-4289365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               224
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               9, 155
               

               Conread position:
               66-390
               

               Cow position:
               chrX:33539389-33539053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               52, 44
               

               Conread position:
               66-403
               

               Cow position:
               chrX:35288876-35288533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               54, 22
               

               Conread position:
               66-411
               

               Cow position:
               chrX:39545773-39546105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               233
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               72, 36
               

               Conread position:
               66-411
               

               Cow position:
               chrX:41871296-41870938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 155
               

               Conread position:
               66-427
               

               Cow position:
               chrX:36841078-36840726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               45, 68
               

               Conread position:
               66-437
               

               Cow position:
               chrX:755181-754802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               257
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               43, 81
               

               Conread position:
               66-442
               

               Cow position:
               chrX:38964334-38963945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 12
               

               Conread position:
               67-305
               

               Cow position:
               chrX:17966561-17966322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               47, 56
               

               Conread position:
               67-411
               

               Cow position:
               chrX:20377182-20376832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               237
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               10, 50
               

               Conread position:
               67-442
               

               Cow position:
               chrX:33001134-33000742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 13
               

               Conread position:
               67-442
               

               Cow position:
               chrX:44656736-44657126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               39, 19
               

               Conread position:
               68-280
               

               Cow position:
               chrX:24170517-24170727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               23, 9
               

               Conread position:
               68-439
               

               Cow position:
               chrX:488720-488331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               254
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               39, 77
               

               Conread position:
               68-439
               

               Cow position:
               chrX:16514059-16514423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               248
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               111, 37
               

               Conread position:
               68-442
               

               Cow position:
               chrX:40480640-40481034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 9
               

               Conread position:
               69-250
               

               Cow position:
               chrX:4942044-4942226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               12, 49
               

               Conread position:
               74-279
               

               Cow position:
               chrX:31744785-31745002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               32, 70
               

               Conread position:
               74-411
               

               Cow position:
               chrX:19879246-19878917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               36, 57
               

               Conread position:
               74-442
               

               Cow position:
               chrX:917169-917533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 36
               

               Conread position:
               74-442
               

               Cow position:
               chrX:11072990-11073350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 10
               

               Conread position:
               74-442
               

               Cow position:
               chrX:22624690-22624319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               262
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               34, 139
               

               Conread position:
               74-442
               

               Cow position:
               chrX:36976161-36975788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 31
               

               Conread position:
               75-364
               

               Cow position:
               chrX:33204764-33205050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               104, 35
               

               Conread position:
               75-389
               

               Cow position:
               chrX:23939845-23940136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               75-409
               

               Cow position:
               chrX:1503536-1503207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               57, 30
               

               Conread position:
               75-409
               

               Cow position:
               chrX:18286874-18287188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               111, 53
               

               Conread position:
               75-412
               

               Cow position:
               chrX:29121250-29120912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               75-418
               

               Cow position:
               chrX:30420738-30421069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               248
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               30, 139
               

               Conread position:
               75-425
               

               Cow position:
               chrX:41123274-41122922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 143
               

               Conread position:
               75-427
               

               Cow position:
               chrX:11614904-11614550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 136
               

               Conread position:
               75-438
               

               Cow position:
               chrX:10959187-10959558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               257
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               55, 35
               

               Conread position:
               75-439
               

               Cow position:
               chrX:10302546-10302180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               239
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               43, 35
               

               Conread position:
               75-440
               

               Cow position:
               chrX:45968366-45968004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               268
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               31, 143
               

               Conread position:
               75-441
               

               Cow position:
               chrX:23414167-23414527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               34, 55
               

               Conread position:
               75-442
               

               Cow position:
               chrX:17662392-17662758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 31
               

               Conread position:
               75-442
               

               Cow position:
               chrX:47248568-47248946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               253
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               32, 61
               

               Conread position:
               78-439
               

               Cow position:
               chrX:6563723-6563353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               242
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               69, 43
               

               Conread position:
               78-441
               

               Cow position:
               chrX:32431825-32431469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               247
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               102, 29
               

               Conread position:
               78-442
               

               Cow position:
               chrX:8925906-8925544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 71
               

               Conread position:
               78-446
               

               Cow position:
               chrX:6203747-6203390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               250
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               52, 32
               

               Conread position:
               78-446
               

               Cow position:
               chrX:11938727-11939092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 66
               

               Conread position:
               78-452
               

               Cow position:
               chrX:37575042-37574685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 28
               

               Conread position:
               79-411
               

               Cow position:
               chrX:12437058-12437384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               27, 129
               

               Conread position:
               79-438
               

               Cow position:
               chrX:18456605-18456235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               244
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               54, 64
               

               Conread position:
               79-442
               

               Cow position:
               chrX:5637954-5638327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 57
               

               Conread position:
               79-449
               

               Cow position:
               chrX:35224501-35224130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 31
               

               Conread position:
               80-411
               

               Cow position:
               chrX:41732999-41733321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               226
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               47, 27
               

               Conread position:
               80-421
               

               Cow position:
               chrX:39415166-39415509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               246
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               52, 20
               

               Conread position:
               80-442
               

               Cow position:
               chrX:4825624-4825989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               24, 134
               

               Conread position:
               80-442
               

               Cow position:
               chrX:19930847-19930494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               50, 25
               

               Conread position:
               80-442
               

               Cow position:
               chrX:30543084-30543452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 43
               

               Conread position:
               81-286
               

               Cow position:
               chrX:38722320-38722117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               49, 24
               

               Conread position:
               81-288
               

               Cow position:
               chrX:35278533-35278324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               49, 10
               

               Conread position:
               83-442
               

               Cow position:
               chrX:4043662-4044012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 130
               

               Conread position:
               84-364
               

               Cow position:
               chrX:20881741-20882023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               21, 44
               

               Conread position:
               87-415
               

               Cow position:
               chrX:5679378-5679700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 14
               

               Conread position:
               88-361
               

               Cow position:
               chrX:41192905-41192625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               209
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               18, 127
               

               Conread position:
               89-284
               

               Cow position:
               chrX:46069970-46070174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               17, 125
               

               Conread position:
               92-442
               

               Cow position:
               chrX:34554911-34554567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               251
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               87, 18
               

               Conread position:
               99-254
               

               Cow position:
               chrX:2314441-2314591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               80, 11
               

               Conread position:
               99-442
               

               Cow position:
               chrX:6407721-6407387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 11
               

               Conread position:
               99-442
               

               Cow position:
               chrX:40035262-40035606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 11
               

               Conread position:
               99-456
               

               Cow position:
               chrX:22822232-22821872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               256
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               7, 112
               

               Conread position:
               107-411
               

               Cow position:
               chrX:44397184-44396886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 88
               

               Conread position:
               108-442
               

               Cow position:
               chrX:20697438-20697769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               243
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               71, 9
               

               Conread position:
               109-349
               

               Cow position:
               chrX:22914870-22915103 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               35, 14
               

               Conread position:
               112-322
               

               Cow position:
               chrX:24749255-24749049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               43, 24
               

               Conread position:
               112-438
               

               Cow position:
               chrX:28865836-28866153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 95
               

               Conread position:
               112-442
               

               Cow position:
               chrX:38006597-38006929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 98
               

               Conread position:
               114-442
               

               Cow position:
               chrX:1175817-1176144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               231
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               208, 64
               

               Conread position:
               114-442
               

               Cow position:
               chrX:27508852-27509181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               14, 70
               

               Conread position:
               115-239
               

               Cow position:
               chrX:23471697-23471823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               100
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               38, 93
               

               Conread position:
               115-254
               

               Cow position:
               chrX:8327076-8326931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               15, 97
               

               Conread position:
               115-265
               

               Cow position:
               chrX:19761920-19761771 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               115-266
               

               Cow position:
               chrX:31480137-31479987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               29, 94
               

               Conread position:
               115-268
               

               Cow position:
               chrX:30824156-30824001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               64, 94
               

               Conread position:
               115-277
               

               Cow position:
               chrX:1122375-1122538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               25, 97
               

               Conread position:
               115-283
               

               Cow position:
               chrX:47079799-47079626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               17, 98
               

               Conread position:
               115-285
               

               Cow position:
               chrX:27074880-27075054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               21, 96
               

               Conread position:
               115-285
               

               Cow position:
               chrX:42331447-42331275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               62, 28
               

               Conread position:
               115-286
               

               Cow position:
               chrX:39290525-39290355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               65, 49
               

               Conread position:
               115-287
               

               Cow position:
               chrX:42479998-42479828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               63, 11
               

               Conread position:
               115-291
               

               Cow position:
               chrX:26205283-26205457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               64, 27
               

               Conread position:
               115-295
               

               Cow position:
               chrX:16836123-16836299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               63, 38
               

               Conread position:
               115-301
               

               Cow position:
               chrX:42432343-42432529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               64, 18
               

               Conread position:
               115-301
               

               Cow position:
               chrX:42449842-42450033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               13, 97
               

               Conread position:
               115-304
               

               Cow position:
               chrX:42836352-42836164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               20, 96
               

               Conread position:
               115-311
               

               Cow position:
               chrX:32318472-32318276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               64, 37
               

               Conread position:
               115-318
               

               Cow position:
               chrX:4645743-4645946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               27, 95
               

               Conread position:
               115-318
               

               Cow position:
               chrX:17956860-17956661 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               20, 95
               

               Conread position:
               115-318
               

               Cow position:
               chrX:28940415-28940212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               160
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               25, 98
               

               Conread position:
               115-321
               

               Cow position:
               chrX:47061558-47061357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               64, 27
               

               Conread position:
               115-322
               

               Cow position:
               chrX:48558918-48558709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               29, 97
               

               Conread position:
               115-325
               

               Cow position:
               chrX:20677976-20678194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               64, 37
               

               Conread position:
               115-325
               

               Cow position:
               chrX:22392817-22393027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 92
               

               Conread position:
               115-326
               

               Cow position:
               chrX:19394726-19394510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               169
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               34, 98
               

               Conread position:
               115-340
               

               Cow position:
               chrX:13122115-13121868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               20, 102
               

               Conread position:
               115-341
               

               Cow position:
               chrX:20957410-20957190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               14, 97
               

               Conread position:
               115-346
               

               Cow position:
               chrX:48121034-48121259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               115-356
               

               Cow position:
               chrX:4515859-4515606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 82
               

               Conread position:
               115-362
               

               Cow position:
               chrX:27261362-27261104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               198
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               34, 95
               

               Conread position:
               115-369
               

               Cow position:
               chrX:29050414-29050156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               197
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               64, 92
               

               Conread position:
               115-370
               

               Cow position:
               chrX:1466331-1466069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               192
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               27, 92
               

               Conread position:
               115-370
               

               Cow position:
               chrX:33654672-33654933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               13, 97
               

               Conread position:
               115-374
               

               Cow position:
               chrX:12095600-12095870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               206
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               27, 97
               

               Conread position:
               115-374
               

               Cow position:
               chrX:47246589-47246843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               43, 93
               

               Conread position:
               115-376
               

               Cow position:
               chrX:40283294-40283027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               29, 99
               

               Conread position:
               115-382
               

               Cow position:
               chrX:34836900-34837158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               204
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               64, 15
               

               Conread position:
               115-389
               

               Cow position:
               chrX:46291312-46291028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               39, 50
               

               Conread position:
               115-390
               

               Cow position:
               chrX:14973586-14973853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               62, 24
               

               Conread position:
               115-405
               

               Cow position:
               chrX:34222884-34222586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               29, 77
               

               Conread position:
               115-406
               

               Cow position:
               chrX:34315693-34315396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 97
               

               Conread position:
               115-408
               

               Cow position:
               chrX:43115320-43115021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 95
               

               Conread position:
               115-411
               

               Cow position:
               chrX:27705758-27705451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               232
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               29, 97
               

               Conread position:
               115-411
               

               Cow position:
               chrX:34532689-34532389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 94
               

               Conread position:
               115-413
               

               Cow position:
               chrX:40685158-40685466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 95
               

               Conread position:
               115-414
               

               Cow position:
               chrX:31729608-31729307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               115-415
               

               Cow position:
               chrX:5919663-5919359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 96
               

               Conread position:
               115-421
               

               Cow position:
               chrX:16762939-16762623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 8
               

               Conread position:
               115-429
               

               Cow position:
               chrX:9201713-9201398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 18
               

               Conread position:
               115-434
               

               Cow position:
               chrX:15546053-15545738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               20, 96
               

               Conread position:
               115-436
               

               Cow position:
               chrX:24365651-24365989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               249
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               29, 79
               

               Conread position:
               115-436
               

               Cow position:
               chrX:26493178-26492847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               57, 97
               

               Conread position:
               115-437
               

               Cow position:
               chrX:25207690-25208003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               64, 74
               

               Conread position:
               115-438
               

               Cow position:
               chrX:8869233-8869563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 94
               

               Conread position:
               115-438
               

               Cow position:
               chrX:31252579-31252257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 81
               

               Conread position:
               115-439
               

               Cow position:
               chrX:36356275-36355957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 74
               

               Conread position:
               115-440
               

               Cow position:
               chrX:11633853-11633519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 96
               

               Conread position:
               115-440
               

               Cow position:
               chrX:20887474-20887805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               39, 15
               

               Conread position:
               115-441
               

               Cow position:
               chrX:3654775-3654444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               45, 59
               

               Conread position:
               115-441
               

               Cow position:
               chrX:4399289-4398965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 83
               

               Conread position:
               115-442
               

               Cow position:
               chrX:4268899-4269228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               64, 24
               

               Conread position:
               115-442
               

               Cow position:
               chrX:4278947-4279276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               234
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               37, 96
               

               Conread position:
               115-442
               

               Cow position:
               chrX:7513685-7513353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               105, 28
               

               Conread position:
               115-442
               

               Cow position:
               chrX:9425586-9425903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               64, 94
               

               Conread position:
               115-442
               

               Cow position:
               chrX:11656249-11655927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 93
               

               Conread position:
               115-442
               

               Cow position:
               chrX:13868875-13868532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               253
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               26, 98
               

               Conread position:
               115-442
               

               Cow position:
               chrX:14599704-14599368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 60
               

               Conread position:
               115-442
               

               Cow position:
               chrX:16416674-16416345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 28
               

               Conread position:
               115-442
               

               Cow position:
               chrX:17231908-17231573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               27, 98
               

               Conread position:
               115-442
               

               Cow position:
               chrX:22074968-22074639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 192
               

               Conread position:
               115-442
               

               Cow position:
               chrX:27175170-27174834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               248
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               20, 97
               

               Conread position:
               115-442
               

               Cow position:
               chrX:27431750-27432080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 93
               

               Conread position:
               115-442
               

               Cow position:
               chrX:32420382-32420057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               29, 95
               

               Conread position:
               115-442
               

               Cow position:
               chrX:34441282-34441613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 97
               

               Conread position:
               115-442
               

               Cow position:
               chrX:35269027-35268726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               115-442
               

               Cow position:
               chrX:35543055-35542730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 93
               

               Conread position:
               115-442
               

               Cow position:
               chrX:35885561-35885891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 25
               

               Conread position:
               115-442
               

               Cow position:
               chrX:36283511-36283184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               244
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               27, 60
               

               Conread position:
               115-442
               

               Cow position:
               chrX:38094353-38094688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 92
               

               Conread position:
               115-442
               

               Cow position:
               chrX:38218884-38218546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 96
               

               Conread position:
               115-442
               

               Cow position:
               chrX:41068891-41068566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 37
               

               Conread position:
               115-442
               

               Cow position:
               chrX:45598437-45598765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               36, 93
               

               Conread position:
               115-446
               

               Cow position:
               chrX:8900190-8899859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               225
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               92, 43
               

               Conread position:
               115-446
               

               Cow position:
               chrX:29601658-29601998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 95
               

               Conread position:
               115-447
               

               Cow position:
               chrX:14275577-14275902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 37
               

               Conread position:
               115-452
               

               Cow position:
               chrX:9635018-9635352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 98
               

               Conread position:
               115-452
               

               Cow position:
               chrX:14883786-14884133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 95
               

               Conread position:
               115-452
               

               Cow position:
               chrX:17795151-17794814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 95
               

               Conread position:
               115-452
               

               Cow position:
               chrX:38642417-38642086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 93
               

               Conread position:
               115-455
               

               Cow position:
               chrX:41238191-41238539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               62, 31
               

               Conread position:
               115-456
               

               Cow position:
               chrX:9251992-9252353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 96
               

               Conread position:
               115-456
               

               Cow position:
               chrX:20339722-20340066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 79
               

               Conread position:
               115-456
               

               Cow position:
               chrX:22482518-22482864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 216
               

               Conread position:
               115-456
               

               Cow position:
               chrX:29542057-29542394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 61
               

               Conread position:
               115-456
               

               Cow position:
               chrX:33855052-33855408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 82
               

               Conread position:
               115-456
               

               Cow position:
               chrX:37072557-37072230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 93
               

               Conread position:
               116-351
               

               Cow position:
               chrX:1087978-1088209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               116-409
               

               Cow position:
               chrX:34504883-34505178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 52
               

               Conread position:
               116-440
               

               Cow position:
               chrX:10252032-10252342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               241
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               31, 93
               

               Conread position:
               116-442
               

               Cow position:
               chrX:35382872-35383181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               237
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               61, 36
               

               Conread position:
               116-442
               

               Cow position:
               chrX:46587991-46587656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 94
               

               Conread position:
               116-455
               

               Cow position:
               chrX:27145769-27145449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 14
               

               Conread position:
               117-258
               

               Cow position:
               chrX:37062416-37062561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               110
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 94
               

               Conread position:
               117-274
               

               Cow position:
               chrX:25459562-25459726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               17, 98
               

               Conread position:
               117-285
               

               Cow position:
               chrX:3806847-3806679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               62, 90
               

               Conread position:
               117-285
               

               Cow position:
               chrX:11653936-11653761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 91
               

               Conread position:
               117-285
               

               Cow position:
               chrX:18046564-18046398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               32, 72
               

               Conread position:
               117-349
               

               Cow position:
               chrX:27511590-27511361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               62, 29
               

               Conread position:
               117-380
               

               Cow position:
               chrX:12290887-12290624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               11, 93
               

               Conread position:
               117-384
               

               Cow position:
               chrX:169380-169646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 91
               

               Conread position:
               117-417
               

               Cow position:
               chrX:30840710-30840417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               60, 23
               

               Conread position:
               117-425
               

               Cow position:
               chrX:41526363-41526669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 79
               

               Conread position:
               117-442
               

               Cow position:
               chrX:6414207-6413883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               237
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               37, 90
               

               Conread position:
               117-442
               

               Cow position:
               chrX:30962714-30963033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               62, 29
               

               Conread position:
               117-442
               

               Cow position:
               chrX:42247012-42247345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               118-393
               

               Cow position:
               chrX:6265436-6265712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               41, 12
               

               Conread position:
               118-407
               

               Cow position:
               chrX:7710372-7710672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 84
               

               Conread position:
               118-452
               

               Cow position:
               chrX:45414142-45414471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               61, 33
               

               Conread position:
               119-390
               

               Cow position:
               chrX:9650860-9651137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               203
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               23, 89
               

               Conread position:
               119-433
               

               Cow position:
               chrX:12249983-12249651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               238
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               33, 24
               

               Conread position:
               119-442
               

               Cow position:
               chrX:12309218-12309550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 95
               

               Conread position:
               119-442
               

               Cow position:
               chrX:29544715-29545041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               61, 51
               

               Conread position:
               120-390
               

               Cow position:
               chrX:42927661-42927931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               205
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               25, 88
               

               Conread position:
               120-421
               

               Cow position:
               chrX:34314187-34313890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 89
               

               Conread position:
               120-442
               

               Cow position:
               chrX:13191397-13191705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               60, 89
               

               Conread position:
               121-421
               

               Cow position:
               chrX:45099292-45098978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               223
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               18, 90
               

               Conread position:
               121-452
               

               Cow position:
               chrX:34377104-34376784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               123-283
               

               Cow position:
               chrX:34420894-34420733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               31, 85
               

               Conread position:
               123-340
               

               Cow position:
               chrX:19097060-19097278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               54, 83
               

               Conread position:
               123-455
               

               Cow position:
               chrX:34412006-34411667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 85
               

               Conread position:
               124-268
               

               Cow position:
               chrX:23266573-23266429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               53, 85
               

               Conread position:
               124-287
               

               Cow position:
               chrX:6222968-6223134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               124
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               25, 85
               

               Conread position:
               124-357
               

               Cow position:
               chrX:22115159-22115396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               185
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               53, 83
               

               Conread position:
               124-360
               

               Cow position:
               chrX:5135361-5135607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               53, 86
               

               Conread position:
               124-365
               

               Cow position:
               chrX:11317809-11318054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               17, 48
               

               Conread position:
               124-435
               

               Cow position:
               chrX:37910601-37910293 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 19
               

               Conread position:
               124-439
               

               Cow position:
               chrX:42855619-42855290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 86
               

               Conread position:
               124-440
               

               Cow position:
               chrX:15147039-15147347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 83
               

               Conread position:
               124-442
               

               Cow position:
               chrX:12979675-12979992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 74
               

               Conread position:
               124-452
               

               Cow position:
               chrX:31312188-31311854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 84
               

               Conread position:
               124-455
               

               Cow position:
               chrX:7278072-7277746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 20
               

               Conread position:
               125-291
               

               Cow position:
               chrX:42160781-42160618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               126-246
               

               Cow position:
               chrX:29688021-29688139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 17
               

               Conread position:
               126-252
               

               Cow position:
               chrX:33151831-33151954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               104
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               28, 49
               

               Conread position:
               126-260
               

               Cow position:
               chrX:40355188-40355057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               25, 81
               

               Conread position:
               126-274
               

               Cow position:
               chrX:35285330-35285181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               110
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-288
               

               Cow position:
               chrX:12191917-12191754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               18, 82
               

               Conread position:
               126-292
               

               Cow position:
               chrX:38587686-38587853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               36, 82
               

               Conread position:
               126-297
               

               Cow position:
               chrX:16984797-16984625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               28, 48
               

               Conread position:
               126-298
               

               Cow position:
               chrX:32574474-32574300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-298
               

               Cow position:
               chrX:36848420-36848596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               31, 84
               

               Conread position:
               126-300
               

               Cow position:
               chrX:35276142-35275969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               37, 80
               

               Conread position:
               126-315
               

               Cow position:
               chrX:23498523-23498709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-316
               

               Cow position:
               chrX:41941780-41941594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               27, 82
               

               Conread position:
               126-328
               

               Cow position:
               chrX:18964673-18964870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               51, 81
               

               Conread position:
               126-349
               

               Cow position:
               chrX:32977929-32978142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               50, 81
               

               Conread position:
               126-357
               

               Cow position:
               chrX:36866329-36866092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               15, 81
               

               Conread position:
               126-357
               

               Cow position:
               chrX:41270831-41271077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               50, 19
               

               Conread position:
               126-359
               

               Cow position:
               chrX:18272902-18273139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               52, 83
               

               Conread position:
               126-364
               

               Cow position:
               chrX:40680771-40680525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               189
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               33, 82
               

               Conread position:
               126-369
               

               Cow position:
               chrX:29549395-29549638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               126-372
               

               Cow position:
               chrX:20168714-20168464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               191
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               53, 81
               

               Conread position:
               126-374
               

               Cow position:
               chrX:4296668-4296916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-374
               

               Cow position:
               chrX:37129426-37129172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               195
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-379
               

               Cow position:
               chrX:21328070-21327802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               203
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-380
               

               Cow position:
               chrX:16348416-16348672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               204
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               50, 44
               

               Conread position:
               126-394
               

               Cow position:
               chrX:24331933-24331662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-398
               

               Cow position:
               chrX:26881407-26881688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 83
               

               Conread position:
               126-407
               

               Cow position:
               chrX:5017266-5017543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 79
               

               Conread position:
               126-407
               

               Cow position:
               chrX:27516675-27516397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               53, 63
               

               Conread position:
               126-409
               

               Cow position:
               chrX:37489875-37489595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 45
               

               Conread position:
               126-409
               

               Cow position:
               chrX:38226953-38227226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               28, 81
               

               Conread position:
               126-411
               

               Cow position:
               chrX:11084910-11085190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               126-411
               

               Cow position:
               chrX:17888266-17888545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-412
               

               Cow position:
               chrX:27393869-27394154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-417
               

               Cow position:
               chrX:616103-616401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 81
               

               Conread position:
               126-418
               

               Cow position:
               chrX:9365523-9365814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               126-434
               

               Cow position:
               chrX:29680105-29680414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 81
               

               Conread position:
               126-440
               

               Cow position:
               chrX:10831331-10831656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               126-440
               

               Cow position:
               chrX:40269651-40269325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 84
               

               Conread position:
               126-441
               

               Cow position:
               chrX:23785803-23785493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 70
               

               Conread position:
               126-442
               

               Cow position:
               chrX:618853-619169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 17
               

               Conread position:
               126-442
               

               Cow position:
               chrX:9416529-9416854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 26
               

               Conread position:
               126-442
               

               Cow position:
               chrX:11717626-11717944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 84
               

               Conread position:
               126-442
               

               Cow position:
               chrX:21064438-21064123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               54, 44
               

               Conread position:
               126-442
               

               Cow position:
               chrX:25035225-25035549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               235
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-442
               

               Cow position:
               chrX:27446843-27446527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               234
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-442
               

               Cow position:
               chrX:28134495-28134184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 70
               

               Conread position:
               126-442
               

               Cow position:
               chrX:31436631-31436321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-442
               

               Cow position:
               chrX:32821185-32820867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-442
               

               Cow position:
               chrX:34238879-34238559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 85
               

               Conread position:
               126-442
               

               Cow position:
               chrX:34503075-34502757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 26
               

               Conread position:
               126-442
               

               Cow position:
               chrX:35387769-35388067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 83
               

               Conread position:
               126-442
               

               Cow position:
               chrX:38935435-38935120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               219
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               27, 53
               

               Conread position:
               126-442
               

               Cow position:
               chrX:42171143-42171461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 7
               

               Conread position:
               126-442
               

               Cow position:
               chrX:43730067-43730376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               126-442
               

               Cow position:
               chrX:44192287-44192614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 280
               

               Conread position:
               126-452
               

               Cow position:
               chrX:13382482-13382154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 83
               

               Conread position:
               126-452
               

               Cow position:
               chrX:31489677-31489340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 84
               

               Conread position:
               126-452
               

               Cow position:
               chrX:33466780-33466442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               246
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               53, 81
               

               Conread position:
               127-276
               

               Cow position:
               chrX:38301965-38301815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               127-285
               

               Cow position:
               chrX:42506077-42506230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               30, 83
               

               Conread position:
               127-299
               

               Cow position:
               chrX:4037022-4037188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               50, 17
               

               Conread position:
               127-320
               

               Cow position:
               chrX:40531887-40532080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               27, 83
               

               Conread position:
               127-325
               

               Cow position:
               chrX:21665086-21665281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               52, 80
               

               Conread position:
               127-340
               

               Cow position:
               chrX:31626823-31627037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               51, 80
               

               Conread position:
               127-377
               

               Cow position:
               chrX:10516405-10516157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 19
               

               Conread position:
               127-411
               

               Cow position:
               chrX:36068171-36067884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 81
               

               Conread position:
               127-417
               

               Cow position:
               chrX:40557520-40557820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 85
               

               Conread position:
               127-441
               

               Cow position:
               chrX:43527664-43527343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               238
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               27, 83
               

               Conread position:
               127-442
               

               Cow position:
               chrX:8731245-8730918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 19
               

               Conread position:
               128-411
               

               Cow position:
               chrX:7695903-7695615 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 79
               

               Conread position:
               128-442
               

               Cow position:
               chrX:23583714-23583397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               52, 36
               

               Conread position:
               128-442
               

               Cow position:
               chrX:44961902-44961586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 18
               

               Conread position:
               130-263
               

               Cow position:
               chrX:18637642-18637508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               47, 15
               

               Conread position:
               130-276
               

               Cow position:
               chrX:41810015-41810161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               24, 78
               

               Conread position:
               130-305
               

               Cow position:
               chrX:25412058-25411886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               24, 36
               

               Conread position:
               130-353
               

               Cow position:
               chrX:35985970-35985749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               24, 38
               

               Conread position:
               130-369
               

               Cow position:
               chrX:918564-918818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               48, 78
               

               Conread position:
               130-373
               

               Cow position:
               chrX:38560710-38560462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               49, 22
               

               Conread position:
               130-390
               

               Cow position:
               chrX:38654288-38654542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               13, 74
               

               Conread position:
               130-410
               

               Cow position:
               chrX:42873538-42873260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               218
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               24, 81
               

               Conread position:
               130-412
               

               Cow position:
               chrX:6690109-6690388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 22
               

               Conread position:
               130-415
               

               Cow position:
               chrX:878227-878513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 78
               

               Conread position:
               130-418
               

               Cow position:
               chrX:5118346-5118642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 77
               

               Conread position:
               130-418
               

               Cow position:
               chrX:21986139-21986432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 77
               

               Conread position:
               130-421
               

               Cow position:
               chrX:47191257-47191547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               83, 13
               

               Conread position:
               130-438
               

               Cow position:
               chrX:15006997-15007311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 77
               

               Conread position:
               130-442
               

               Cow position:
               chrX:11082468-11082775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 79
               

               Conread position:
               130-442
               

               Cow position:
               chrX:20152009-20151689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               24, 80
               

               Conread position:
               130-442
               

               Cow position:
               chrX:23092026-23091720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 185
               

               Conread position:
               130-442
               

               Cow position:
               chrX:27771815-27772122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               14, 77
               

               Conread position:
               130-442
               

               Cow position:
               chrX:38549600-38549287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 78
               

               Conread position:
               130-442
               

               Cow position:
               chrX:41790277-41790606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               227
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               51, 77
               

               Conread position:
               130-442
               

               Cow position:
               chrX:45429870-45430178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 77
               

               Conread position:
               130-451
               

               Cow position:
               chrX:6544407-6544086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 78
               

               Conread position:
               130-452
               

               Cow position:
               chrX:47186174-47186492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               14, 33
               

               Conread position:
               131-284
               

               Cow position:
               chrX:31829309-31829463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               23, 78
               

               Conread position:
               131-288
               

               Cow position:
               chrX:29733441-29733598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               46, 76
               

               Conread position:
               131-317
               

               Cow position:
               chrX:38321232-38321420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               48, 21
               

               Conread position:
               131-401
               

               Cow position:
               chrX:23562784-23562512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 77
               

               Conread position:
               131-403
               

               Cow position:
               chrX:45113772-45113495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               44, 80
               

               Conread position:
               131-409
               

               Cow position:
               chrX:31294421-31294688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 76
               

               Conread position:
               131-417
               

               Cow position:
               chrX:18204311-18204602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               23, 77
               

               Conread position:
               131-438
               

               Cow position:
               chrX:34402156-34401837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               131-441
               

               Cow position:
               chrX:46433642-46433322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 76
               

               Conread position:
               131-442
               

               Cow position:
               chrX:5872469-5872152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 77
               

               Conread position:
               131-442
               

               Cow position:
               chrX:7351449-7351134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 77
               

               Conread position:
               131-442
               

               Cow position:
               chrX:8797403-8797086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 79
               

               Conread position:
               131-442
               

               Cow position:
               chrX:22387098-22387409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 77
               

               Conread position:
               131-442
               

               Cow position:
               chrX:31250540-31250228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               231
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               22, 77
               

               Conread position:
               131-446
               

               Cow position:
               chrX:30922323-30922016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               22, 78
               

               Conread position:
               131-452
               

               Cow position:
               chrX:37780956-37781289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 78
               

               Conread position:
               131-452
               

               Cow position:
               chrX:41884260-41884589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 78
               

               Conread position:
               131-456
               

               Cow position:
               chrX:24424249-24424563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               229
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               23, 78
               

               Conread position:
               132-246
               

               Cow position:
               chrX:11578498-11578613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               93
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               21, 75
               

               Conread position:
               132-262
               

               Cow position:
               chrX:20340496-20340623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               46, 11
               

               Conread position:
               132-340
               

               Cow position:
               chrX:4109335-4109134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               22, 76
               

               Conread position:
               132-425
               

               Cow position:
               chrX:23562007-23561728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               45, 13
               

               Conread position:
               132-439
               

               Cow position:
               chrX:630160-630469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               33, 49
               

               Conread position:
               132-442
               

               Cow position:
               chrX:46072668-46072982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 20
               

               Conread position:
               132-452
               

               Cow position:
               chrX:44054953-44054630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 76
               

               Conread position:
               132-456
               

               Cow position:
               chrX:31442679-31442997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 75
               

               Conread position:
               133-340
               

               Cow position:
               chrX:25037137-25036931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               26, 75
               

               Conread position:
               133-358
               

               Cow position:
               chrX:39220229-39220000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               12, 75
               

               Conread position:
               134-412
               

               Cow position:
               chrX:7162203-7161926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 18
               

               Conread position:
               134-431
               

               Cow position:
               chrX:42235376-42235683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 73
               

               Conread position:
               135-403
               

               Cow position:
               chrX:30337811-30338064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               44, 71
               

               Conread position:
               135-452
               

               Cow position:
               chrX:10411838-10412160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 9
               

               Conread position:
               136-291
               

               Cow position:
               chrX:4615865-4616020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               42, 34
               

               Conread position:
               137-296
               

               Cow position:
               chrX:32942930-32943090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 70
               

               Conread position:
               137-311
               

               Cow position:
               chrX:20743749-20743575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               42, 70
               

               Conread position:
               137-421
               

               Cow position:
               chrX:4996731-4996458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               203
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               41, 8
               

               Conread position:
               139-256
               

               Cow position:
               chrX:21573715-21573599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               119
               

               Alignm identity:
               94
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               38, 50
               

               Conread position:
               139-358
               

               Cow position:
               chrX:36514749-36514974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               174
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               139-414
               

               Cow position:
               chrX:29032552-29032276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               19, 26
               

               Conread position:
               141-289
               

               Cow position:
               chrX:16830361-16830217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               38, 66
               

               Conread position:
               143-442
               

               Cow position:
               chrX:45846240-45845934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 62
               

               Conread position:
               145-409
               

               Cow position:
               chrX:19273570-19273854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 64
               

               Conread position:
               145-414
               

               Cow position:
               chrX:2301061-2300793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               34, 46
               

               Conread position:
               145-442
               

               Cow position:
               chrX:21672696-21672390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 25
               

               Conread position:
               145-452
               

               Cow position:
               chrX:37232544-37232238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 62
               

               Conread position:
               146-325
               

               Cow position:
               chrX:12082188-12082366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               32, 61
               

               Conread position:
               147-377
               

               Cow position:
               chrX:31515309-31515070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               185
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               31, 60
               

               Conread position:
               147-442
               

               Cow position:
               chrX:33493911-33493613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 62
               

               Conread position:
               148-264
               

               Cow position:
               chrX:34508678-34508562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               99
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               30, 58
               

               Conread position:
               148-438
               

               Cow position:
               chrX:27228261-27227966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 60
               

               Conread position:
               148-452
               

               Cow position:
               chrX:6278364-6278677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 59
               

               Conread position:
               150-419
               

               Cow position:
               chrX:47342247-47341986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               29, 57
               

               Conread position:
               150-449
               

               Cow position:
               chrX:47054393-47054699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 59
               

               Conread position:
               151-411
               

               Cow position:
               chrX:34565415-34565150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-260
               

               Cow position:
               chrX:4617268-4617376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-282
               

               Cow position:
               chrX:25788775-25788905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-282
               

               Cow position:
               chrX:29501754-29501881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 54
               

               Conread position:
               152-285
               

               Cow position:
               chrX:29478853-29478721 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               107
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-288
               

               Cow position:
               chrX:11762871-11763007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               107
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-318
               

               Cow position:
               chrX:23188654-23188811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               25, 55
               

               Conread position:
               152-322
               

               Cow position:
               chrX:29553415-29553247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               25, 55
               

               Conread position:
               152-322
               

               Cow position:
               chrX:42894056-42893879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               140
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-331
               

               Cow position:
               chrX:19943106-19943284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               151
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               26, 52
               

               Conread position:
               152-338
               

               Cow position:
               chrX:46429689-46429881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-340
               

               Cow position:
               chrX:15820724-15820541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-343
               

               Cow position:
               chrX:44702936-44703137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               27, 128
               

               Conread position:
               152-370
               

               Cow position:
               chrX:45649012-45648781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               152-383
               

               Cow position:
               chrX:40108388-40108611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               25, 55
               

               Conread position:
               152-387
               

               Cow position:
               chrX:29230129-29229901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-397
               

               Cow position:
               chrX:11851549-11851788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               26, 31
               

               Conread position:
               152-403
               

               Cow position:
               chrX:47481926-47481675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               24, 53
               

               Conread position:
               152-407
               

               Cow position:
               chrX:38728864-38728608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-407
               

               Cow position:
               chrX:48044386-48044641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               25, 15
               

               Conread position:
               152-409
               

               Cow position:
               chrX:37955977-37955702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               206
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-409
               

               Cow position:
               chrX:42469811-42470072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-411
               

               Cow position:
               chrX:10865743-10866001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               15, 57
               

               Conread position:
               152-411
               

               Cow position:
               chrX:37986355-37986100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-412
               

               Cow position:
               chrX:1514289-1514541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-412
               

               Cow position:
               chrX:43568049-43567790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               197
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               25, 56
               

               Conread position:
               152-413
               

               Cow position:
               chrX:45977057-45976785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               199
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               10, 56
               

               Conread position:
               152-414
               

               Cow position:
               chrX:6260019-6260295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-415
               

               Cow position:
               chrX:41027289-41027020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 57
               

               Conread position:
               152-421
               

               Cow position:
               chrX:38066325-38066593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-421
               

               Cow position:
               chrX:45174980-45174706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               191
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-424
               

               Cow position:
               chrX:45670352-45670084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               199
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-434
               

               Cow position:
               chrX:45110786-45110502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               26, 57
               

               Conread position:
               152-438
               

               Cow position:
               chrX:41674235-41673947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               8, 56
               

               Conread position:
               152-442
               

               Cow position:
               chrX:5900592-5900296 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-442
               

               Cow position:
               chrX:17726105-17725813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-442
               

               Cow position:
               chrX:19690345-19690056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-442
               

               Cow position:
               chrX:33640105-33639810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               27, 56
               

               Conread position:
               152-442
               

               Cow position:
               chrX:38853327-38853035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-442
               

               Cow position:
               chrX:42492394-42492676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 18
               

               Conread position:
               152-442
               

               Cow position:
               chrX:46532365-46532671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 55
               

               Conread position:
               152-452
               

               Cow position:
               chrX:13647655-13647955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               152-452
               

               Cow position:
               chrX:35273494-35273181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 70
               

               Conread position:
               152-452
               

               Cow position:
               chrX:41878804-41879106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 55
               

               Conread position:
               153-322
               

               Cow position:
               chrX:29585248-29585082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               26, 55
               

               Conread position:
               153-356
               

               Cow position:
               chrX:44339196-44339397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               26, 54
               

               Conread position:
               153-411
               

               Cow position:
               chrX:15815210-15814954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               195
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               172, 19
               

               Conread position:
               153-452
               

               Cow position:
               chrX:39558220-39558518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 42
               

               Conread position:
               154-276
               

               Cow position:
               chrX:37665819-37665697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               23, 53
               

               Conread position:
               154-325
               

               Cow position:
               chrX:13359301-13359460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               24, 53
               

               Conread position:
               154-353
               

               Cow position:
               chrX:19469378-19469575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               26, 53
               

               Conread position:
               154-369
               

               Cow position:
               chrX:23113413-23113186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               178
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               23, 53
               

               Conread position:
               154-389
               

               Cow position:
               chrX:29194358-29194123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               187
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               20, 53
               

               Conread position:
               154-411
               

               Cow position:
               chrX:11454921-11455191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               24, 41
               

               Conread position:
               154-412
               

               Cow position:
               chrX:35413738-35413488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               194
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               23, 54
               

               Conread position:
               154-441
               

               Cow position:
               chrX:46315247-46315541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               93, 50
               

               Conread position:
               155-359
               

               Cow position:
               chrX:19162214-19162421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               24, 52
               

               Conread position:
               155-401
               

               Cow position:
               chrX:37119720-37119473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               190
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               22, 52
               

               Conread position:
               155-440
               

               Cow position:
               chrX:42498921-42499188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               15, 24
               

               Conread position:
               155-442
               

               Cow position:
               chrX:32623697-32623421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 9
               

               Conread position:
               156-442
               

               Cow position:
               chrX:17542084-17541802 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               205
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               38, 21
               

               Conread position:
               156-452
               

               Cow position:
               chrX:3130698-3130410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               23, 51
               

               Conread position:
               157-318
               

               Cow position:
               chrX:27413636-27413476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               20, 50
               

               Conread position:
               157-442
               

               Cow position:
               chrX:45993351-45993057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               49, 20
               

               Conread position:
               159-452
               

               Cow position:
               chrX:22466076-22465784 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               93, 15
               

               Conread position:
               162-336
               

               Cow position:
               chrX:41111833-41111669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               162-411
               

               Cow position:
               chrX:28929956-28929707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               118, 8
               

               Conread position:
               164-452
               

               Cow position:
               chrX:47362505-47362783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               14, 43
               

               Conread position:
               166-442
               

               Cow position:
               chrX:26625555-26625838 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 41
               

               Conread position:
               167-325
               

               Cow position:
               chrX:29115820-29115670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               10, 40
               

               Conread position:
               168-281
               

               Cow position:
               chrX:6213984-6213871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               95
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               9, 39
               

               Conread position:
               168-281
               

               Cow position:
               chrX:48278376-48278265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               115
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               9, 39
               

               Conread position:
               168-318
               

               Cow position:
               chrX:48111421-48111273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               168-319
               

               Cow position:
               chrX:44660762-44660911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               168-356
               

               Cow position:
               chrX:46793776-46793962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               168-357
               

               Cow position:
               chrX:45883857-45884054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               11, 41
               

               Conread position:
               168-378
               

               Cow position:
               chrX:44090892-44090672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               11, 39
               

               Conread position:
               168-401
               

               Cow position:
               chrX:6656496-6656263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               11, 23
               

               Conread position:
               168-406
               

               Cow position:
               chrX:45005738-45005502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               168-408
               

               Cow position:
               chrX:17630687-17630933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               9, 191
               

               Conread position:
               168-411
               

               Cow position:
               chrX:28111623-28111373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               9, 27
               

               Conread position:
               168-411
               

               Cow position:
               chrX:39126440-39126200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               8, 39
               

               Conread position:
               168-411
               

               Cow position:
               chrX:47300789-47301035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               11, 39
               

               Conread position:
               168-417
               

               Cow position:
               chrX:20801883-20801639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               181
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               9, 39
               

               Conread position:
               168-435
               

               Cow position:
               chrX:35258617-35258886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               179
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               168-439
               

               Cow position:
               chrX:17964408-17964681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               11, 41
               

               Conread position:
               168-439
               

               Cow position:
               chrX:25388128-25388396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               9, 26
               

               Conread position:
               168-441
               

               Cow position:
               chrX:45149282-45149014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               191
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               12, 37
               

               Conread position:
               168-442
               

               Cow position:
               chrX:9041130-9041391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               196
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               11, 39
               

               Conread position:
               168-442
               

               Cow position:
               chrX:11856544-11856267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 40
               

               Conread position:
               168-442
               

               Cow position:
               chrX:23340856-23341129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               168-442
               

               Cow position:
               chrX:31260500-31260791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               9, 202
               

               Conread position:
               168-442
               

               Cow position:
               chrX:38936814-38936539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               207
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               9, 39
               

               Conread position:
               168-442
               

               Cow position:
               chrX:43049445-43049183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               9, 40
               

               Conread position:
               168-442
               

               Cow position:
               chrX:47302763-47303041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               168-442
               

               Cow position:
               chrX:48652607-48652888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               205
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               168-446
               

               Cow position:
               chrX:45089560-45089277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               186
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               11, 37
               

               Conread position:
               168-446
               

               Cow position:
               chrX:46722620-46722906 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               209
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               12, 37
               

               Conread position:
               168-452
               

               Cow position:
               chrX:45403711-45404005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 37
               

               Conread position:
               168-452
               

               Cow position:
               chrX:48194921-48195212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               168-456
               

               Cow position:
               chrX:152015-151726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               220
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               11, 39
               

               Conread position:
               169-316
               

               Cow position:
               chrX:35759823-35759971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               8, 40
               

               Conread position:
               169-322
               

               Cow position:
               chrX:7806537-7806385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               118
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               8, 24
               

               Conread position:
               169-412
               

               Cow position:
               chrX:48570875-48571132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               169-418
               

               Cow position:
               chrX:21566520-21566262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               194
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               8, 40
               
UCSC Genome Browser
               Conread position:
               169-439
               

               Cow position:
               chrX:31340823-31340546 (view  custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               10, 22
               
UCSC Genome Browser
               
               
               
Conread position: 169-439

               
               
               
Cow position: chrX:41084028-41083766 (view  custom track)

               
               
               
Alignm length: 274

               
               
               
Alignm identity: 184

               
               
               
Alignm E-value: 1e-25

               
               
               
Alignm gaps (pig, cow): 10, 38
UCSC Genome Browser
               
               
               
Conread position: 169-440

               
               
               
Cow position: chrX:21004797-21004522 (view  custom track)

               
               
               
Alignm length: 280

               
               
               
Alignm identity: 215

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 10, 38

               
               
               Conread position:169-441
               
               
               Cow position:chrX:7572018-7571746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:169-442
               
               
               Cow position:chrX:4632744-4633012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:169-442
               
               
               Cow position:chrX:7509252-7508977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:169-442
               
               
               Cow position:chrX:47967720-47967438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):10, 38

               
               
               Conread position:169-446
               
               
               Cow position:chrX:1615930-1616213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 38

               
               
               Conread position:170-380
               
               
               Cow position:chrX:6541621-6541834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:170-397
               
               
               Cow position:chrX:4403429-4403195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:170-436
               
               
               Cow position:chrX:26440676-26440935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):146, 9

               
               
               Conread position:170-441
               
               
               Cow position:chrX:47046402-47046680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:170-442
               
               
               Cow position:chrX:23513905-23514176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 37

               
               
               Conread position:170-443
               
               
               Cow position:chrX:32310218-32309943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):7, 40

               
               
               Conread position:171-408
               
               
               Cow position:chrX:45875503-45875261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):6, 36

               
               
               Conread position:171-442
               
               
               Cow position:chrX:3580055-3579783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 36

               
               
               Conread position:172-442
               
               
               Cow position:chrX:43973654-43973397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:173-368
               
               
               Cow position:chrX:43150540-43150339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 34

               
               
               Conread position:173-409
               
               
               Cow position:chrX:28013333-28013577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 36

               
               
               Conread position:173-442
               
               
               Cow position:chrX:22921429-22921152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:200
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):143, 33

               
               
               Conread position:173-442
               
               
               Cow position:chrX:30263367-30263091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:173-442
               
               
               Cow position:chrX:36061268-36060990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):149, 33

               
               
               Conread position:173-446
               
               
               Cow position:chrX:8917503-8917227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):7, 34

               
               
               Conread position:174-421
               
               
               Cow position:chrX:34454764-34454521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):159, 34

               
               
               Conread position:175-411
               
               
               Cow position:chrX:7646357-7646123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 31

               
               
               Conread position:176-364
               
               
               Cow position:chrX:48071266-48071075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):92, 28

               
               
               Conread position:176-400
               
               
               Cow position:chrX:40320511-40320283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):137, 30

               
               
               Conread position:176-410
               
               
               Cow position:chrX:48262711-48262474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:176-411
               
               
               Cow position:chrX:31948830-31949066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):161, 30

               
               
               Conread position:176-421
               
               
               Cow position:chrX:48646501-48646743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:176-437
               
               
               Cow position:chrX:47165781-47166043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):145, 30

               
               
               Conread position:176-440
               
               
               Cow position:chrX:27680503-27680242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 30

               
               
               Conread position:176-442
               
               
               Cow position:chrX:13913180-13912919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:176-442
               
               
               Cow position:chrX:47484159-47484433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:176-442
               
               
               Cow position:chrX:47873231-47873503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):140, 28

               
               
               Conread position:177-365
               
               
               Cow position:chrX:35590652-35590844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):147, 29

               
               
               Conread position:177-411
               
               
               Cow position:chrX:25570890-25571127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:177-418
               
               
               Cow position:chrX:13322883-13323135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:176
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):71, 31

               
               
               Conread position:177-438
               
               
               Cow position:chrX:870078-870330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):188, 29

               
               
               Conread position:177-442
               
               
               Cow position:chrX:7497346-7497082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):117, 13

               
               
               Conread position:177-452
               
               
               Cow position:chrX:11844137-11844418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):120, 29

               
               
               Conread position:177-456
               
               
               Cow position:chrX:43779743-43780028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):122, 29

               
               
               Conread position:178-409
               
               
               Cow position:chrX:2764964-2764736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):99, 17

               
               
               Conread position:178-411
               
               
               Cow position:chrX:11313675-11313911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 179

               
               
               Conread position:178-439
               
               
               Cow position:chrX:20791713-20791976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):45, 14

               
               
               Conread position:178-452
               
               
               Cow position:chrX:29289681-29289405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:179-350
               
               
               Cow position:chrX:19965294-19965474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):99, 27

               
               
               Conread position:179-390
               
               
               Cow position:chrX:44873459-44873673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):139, 27

               
               
               Conread position:179-401
               
               
               Cow position:chrX:18111480-18111267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):186, 27

               
               
               Conread position:179-402
               
               
               Cow position:chrX:27945952-27946183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):137, 27

               
               
               Conread position:179-413
               
               
               Cow position:chrX:32170787-32171023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):142, 27

               
               
               Conread position:179-437
               
               
               Cow position:chrX:15597129-15596881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):187, 27

               
               
               Conread position:179-441
               
               
               Cow position:chrX:23563689-23563957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:202
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):142, 27

               
               
               Conread position:179-442
               
               
               Cow position:chrX:15485532-15485788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):60, 31

               
               
               Conread position:179-442
               
               
               Cow position:chrX:16541555-16541839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):107, 29

               
               
               Conread position:179-442
               
               
               Cow position:chrX:27514960-27514707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):186, 29

               
               
               Conread position:179-442
               
               
               Cow position:chrX:40183252-40183511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):188, 29

               
               
               Conread position:179-446
               
               
               Cow position:chrX:21642380-21642645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):145, 27

               
               
               Conread position:179-456
               
               
               Cow position:chrX:16996594-16996331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:205
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):91, 27

               
               
               Conread position:180-442
               
               
               Cow position:chrX:48010705-48010433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):90, 26

               
               
               Conread position:180-456
               
               
               Cow position:chrX:21593382-21593108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:213
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):138, 26

               
               
               Conread position:181-396
               
               
               Cow position:chrX:46546775-46546997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):144, 25

               
               
               Conread position:181-403
               
               
               Cow position:chrX:40826651-40826880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):143, 25

               
               
               Conread position:181-411
               
               
               Cow position:chrX:3488791-3489024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 25

               
               
               Conread position:181-418
               
               
               Cow position:chrX:22453998-22454232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):184, 25

               
               
               Conread position:181-419
               
               
               Cow position:chrX:27685349-27685106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:181-421
               
               
               Cow position:chrX:20677466-20677228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):135, 27

               
               
               Conread position:181-430
               
               
               Cow position:chrX:36393242-36393499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):66, 24

               
               
               Conread position:181-435
               
               
               Cow position:chrX:45459140-45458874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 25

               
               
               Conread position:181-437
               
               
               Cow position:chrX:15231560-15231814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):142, 25

               
               
               Conread position:181-442
               
               
               Cow position:chrX:2467984-2467718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:185-404
               
               
               Cow position:chrX:40692655-40692877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):109, 24

               
               
               Conread position:185-421
               
               
               Cow position:chrX:47279836-47280075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:185-442
               
               
               Cow position:chrX:24259483-24259743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):33, 167

               
               
               Conread position:185-442
               
               
               Cow position:chrX:46032631-46032883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):131, 21

               
               
               Conread position:187-430
               
               
               Cow position:chrX:27416156-27415915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 99

               
               
               Conread position:187-430
               
               
               Cow position:chrX:47145179-47144942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):136, 16

               
               
               Conread position:188-389
               
               
               Cow position:chrX:17949400-17949601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):134, 18

               
               
               Conread position:188-398
               
               
               Cow position:chrX:27119790-27119579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):135, 18

               
               
               Conread position:188-437
               
               
               Cow position:chrX:14222168-14221923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):182, 18

               
               
               Conread position:188-437
               
               
               Cow position:chrX:27106352-27106102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):137, 18

               
               
               Conread position:188-438
               
               
               Cow position:chrX:37843810-37843563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):77, 15

               
               
               Conread position:188-439
               
               
               Cow position:chrX:32583716-32583971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):91, 18

               
               
               Conread position:188-442
               
               
               Cow position:chrX:842250-841997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):133, 20

               
               
               Conread position:188-442
               
               
               Cow position:chrX:40809786-40809525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):115, 18

               
               
               Conread position:188-456
               
               
               Cow position:chrX:9360980-9360708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):113, 18

               
               
               Conread position:189-403
               
               
               Cow position:chrX:36559456-36559238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):95, 17

               
               
               Conread position:189-411
               
               
               Cow position:chrX:34662754-34662984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):133, 17

               
               
               Conread position:190-407
               
               
               Cow position:chrX:26493542-26493766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):104, 18

               
               
               Conread position:190-442
               
               
               Cow position:chrX:24105718-24105465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):8, 113

               
               
               Conread position:191-427
               
               
               Cow position:chrX:12405291-12405537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 15

               
               
               Conread position:191-456
               
               
               Cow position:chrX:37415982-37416255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):62, 15

               
               
               Conread position:193-437
               
               
               Cow position:chrX:48385275-48385520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):177, 13

               
               
               Conread position:194-369
               
               
               Cow position:chrX:1572052-1572228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:194-421
               
               
               Cow position:chrX:20710161-20709932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):24, 12

               
               
               Conread position:196-389
               
               
               Cow position:chrX:4991928-4992127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):128, 10

               
               
               Conread position:196-417
               
               
               Cow position:chrX:29723825-29723602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):124, 10

               
               
               Conread position:196-442
               
               
               Cow position:chrX:13265542-13265781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:196-442
               
               
               Cow position:chrX:42507563-42507808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):175, 10

               
               
               Conread position:197-386
               
               
               Cow position:chrX:47657470-47657276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):105, 9

               
               
               Conread position:197-414
               
               
               Cow position:chrX:47159436-47159654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:197-442
               
               
               Cow position:chrX:48800622-48800375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 9

               
               
               Conread position:200-404
               
               
               Cow position:chrX:19003374-19003174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):89, 6

               
               
               Conread position:203-409
               
               
               Cow position:chrX:25232672-25232460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):115, 209

               
               
               Conread position:205-308
               
               
               Cow position:chrX:4390744-4390843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:205-437
               
               
               Cow position:chrX:10394027-10394254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):137, 73

               
               
               Conread position:205-442
               
               
               Cow position:chrX:29876000-29876228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 44

               
               
               Conread position:205-442
               
               
               Cow position:chrX:38071689-38071932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):117, 88

               
               
               Conread position:206-427
               
               
               Cow position:chrX:11589512-11589738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 79

               
               
               Conread position:206-437
               
               
               Cow position:chrX:35822420-35822184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:208-421
               
               
               Cow position:chrX:13785286-13785506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:208-442
               
               
               Cow position:chrX:678481-678729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:194
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):60, 188

               
               
               Conread position:209-409
               
               
               Cow position:chrX:6234376-6234584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:209-442
               
               
               Cow position:chrX:48044126-48044361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):112, 92

               
               
               Conread position:212-435
               
               
               Cow position:chrX:35409723-35409505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):86, 15

               
               
               Conread position:214-427
               
               
               Cow position:chrX:8517940-8517727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 5

               
               
               Conread position:214-441
               
               
               Cow position:chrX:1810092-1810323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):76, 181

               
               
               Conread position:214-442
               
               
               Cow position:chrX:26875813-26876044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 86

               
               
               Conread position:215-442
               
               
               Cow position:chrX:14900666-14900883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:216-386
               
               
               Cow position:chrX:20790979-20790813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):104, 23

               
               
               Conread position:216-411
               
               
               Cow position:chrX:27449932-27450132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):96, 13

               
               
               Conread position:216-442
               
               
               Cow position:chrX:7718917-7718693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 67

               
               
               Conread position:216-452
               
               
               Cow position:chrX:34192736-34192505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):117, 49

               
               
               Conread position:218-439
               
               
               Cow position:chrX:23571729-23571958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:219-347
               
               
               Cow position:chrX:17301243-17301378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:219-385
               
               
               Cow position:chrX:35848627-35848454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 10

               
               
               Conread position:219-401
               
               
               Cow position:chrX:9155324-9155131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:219-439
               
               
               Cow position:chrX:48035488-48035269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 65

               
               
               Conread position:219-442
               
               
               Cow position:chrX:16789794-16789999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):7, 25

               
               
               Conread position:219-442
               
               
               Cow position:chrX:39938460-39938684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):100, 61

               
               
               Conread position:219-442
               
               
               Cow position:chrX:40116483-40116260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):23, 18

               
               
               Conread position:221-455
               
               
               Cow position:chrX:19188992-19188763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):97, 56

               
               
               Conread position:222-383
               
               
               Cow position:chrX:12018352-12018185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):98, 64

               
               
               Conread position:222-411
               
               
               Cow position:chrX:30163060-30162863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:222-415
               
               
               Cow position:chrX:16055274-16055074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:222-418
               
               
               Cow position:chrX:32215262-32215057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 63

               
               
               Conread position:222-442
               
               
               Cow position:chrX:36961701-36961474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 59

               
               
               Conread position:222-442
               
               
               Cow position:chrX:41166902-41167126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 204

               
               
               Conread position:222-442
               
               
               Cow position:chrX:46146501-46146722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:222-446
               
               
               Cow position:chrX:36778468-36778242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:223-411
               
               
               Cow position:chrX:41991986-41992178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:223-421
               
               
               Cow position:chrX:18999953-18999745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:223-434
               
               
               Cow position:chrX:157713-157930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:223-435
               
               
               Cow position:chrX:7053673-7053890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 55

               
               
               Conread position:223-439
               
               
               Cow position:chrX:18515463-18515242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 67

               
               
               Conread position:224-439
               
               
               Cow position:chrX:11675124-11674907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):58, 117

               
               
               Conread position:225-435
               
               
               Cow position:chrX:42849802-42849587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:225-442
               
               
               Cow position:chrX:8070642-8070863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):103, 60

               
               
               Conread position:225-442
               
               
               Cow position:chrX:42994670-42994451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 63

               
               
               Conread position:226-439
               
               
               Cow position:chrX:38840940-38840728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:226-456
               
               
               Cow position:chrX:9855354-9855125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 56

               
               
               Conread position:226-456
               
               
               Cow position:chrX:9954195-9953966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 61

               
               
               Conread position:227-412
               
               
               Cow position:chrX:28845888-28845701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):78, 65

               
               
               Conread position:227-431
               
               
               Cow position:chrX:18417535-18417742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:227-456
               
               
               Cow position:chrX:40567652-40567424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):107, 14

               
               
               Conread position:228-375
               
               
               Cow position:chrX:48201348-48201199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):90, 59

               
               
               Conread position:228-383
               
               
               Cow position:chrX:29487954-29488107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):91, 59

               
               
               Conread position:228-437
               
               
               Cow position:chrX:28105972-28105764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 69

               
               
               Conread position:228-442
               
               
               Cow position:chrX:43409063-43408836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):57, 208

               
               
               Conread position:229-409
               
               
               Cow position:chrX:23667179-23666991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:229-417
               
               
               Cow position:chrX:48243413-48243600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):94, 56

               
               
               Conread position:230-423
               
               
               Cow position:chrX:42585028-42585215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:230-442
               
               
               Cow position:chrX:25238232-25238015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):11, 128

               
               
               Conread position:230-442
               
               
               Cow position:chrX:42461692-42461907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:173
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:230-452
               
               
               Cow position:chrX:42875035-42874806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 55

               
               
               Conread position:231-411
               
               
               Cow position:chrX:35681393-35681205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):89, 61

               
               
               Conread position:231-442
               
               
               Cow position:chrX:23970432-23970227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:232-411
               
               
               Cow position:chrX:19015487-19015305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:232-411
               
               
               Cow position:chrX:34270452-34270268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:232-442
               
               
               Cow position:chrX:40452168-40452374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):86, 37

               
               
               Conread position:232-452
               
               
               Cow position:chrX:15139497-15139716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):92, 55

               
               
               Conread position:233-387
               
               
               Cow position:chrX:47209395-47209236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):83, 49

               
               
               Conread position:234-417
               
               
               Cow position:chrX:20752303-20752116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:234-442
               
               
               Cow position:chrX:10123305-10123506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 60

               
               
               Conread position:235-411
               
               
               Cow position:chrX:41199155-41198969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:237-412
               
               
               Cow position:chrX:17498130-17497952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 165

               
               
               Conread position:237-442
               
               
               Cow position:chrX:28157543-28157333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):83, 17

               
               
               Conread position:238-421
               
               
               Cow position:chrX:34991080-34990892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:238-442
               
               
               Cow position:chrX:36249817-36250023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 186

               
               
               Conread position:239-387
               
               
               Cow position:chrX:8326802-8326651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):56, 124

               
               
               Conread position:239-441
               
               
               Cow position:chrX:14925043-14924839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):85, 20

               
               
               Conread position:239-442
               
               
               Cow position:chrX:29509395-29509605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:239-442
               
               
               Cow position:chrX:37750211-37750415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 128

               
               
               Conread position:239-442
               
               
               Cow position:chrX:40648029-40647816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):81, 42

               
               
               Conread position:239-446
               
               
               Cow position:chrX:36723046-36723257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):79, 53

               
               
               Conread position:240-452
               
               
               Cow position:chrX:47756886-47757100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):77, 47

               
               
               Conread position:241-442
               
               
               Cow position:chrX:32127951-32128142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 46

               
               
               Conread position:242-411
               
               
               Cow position:chrX:29056158-29055986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):81, 109

               
               
               Conread position:242-412
               
               
               Cow position:chrX:47379427-47379612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:242-446
               
               
               Cow position:chrX:12116087-12115874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):78, 45

               
               
               Conread position:244-411
               
               
               Cow position:chrX:44053298-44053125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:244-442
               
               
               Cow position:chrX:26286019-26285818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:244-452
               
               
               Cow position:chrX:4750264-4750476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:245-442
               
               
               Cow position:chrX:38439518-38439313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:246-440
               
               
               Cow position:chrX:45875034-45874839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):74, 54

               
               
               Conread position:246-442
               
               
               Cow position:chrX:9997298-9997495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):59, 41

               
               
               Conread position:246-442
               
               
               Cow position:chrX:14003610-14003806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):74, 41

               
               
               Conread position:246-442
               
               
               Cow position:chrX:41743950-41743751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:166
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):72, 167

               
               
               Conread position:246-449
               
               
               Cow position:chrX:35969050-35969250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 41

               
               
               Conread position:247-439
               
               
               Cow position:chrX:28098150-28097959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:247-442
               
               
               Cow position:chrX:30832817-30833007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:247-452
               
               
               Cow position:chrX:17908253-17908455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:248-409
               
               
               Cow position:chrX:27270001-27269839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):72, 117

               
               
               Conread position:248-436
               
               
               Cow position:chrX:11581967-11581783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):110, 39

               
               
               Conread position:248-442
               
               
               Cow position:chrX:10096066-10095865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):73, 115

               
               
               Conread position:248-452
               
               
               Cow position:chrX:23497632-23497836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):10, 45

               
               
               Conread position:249-435
               
               
               Cow position:chrX:36314262-36314449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):64, 42

               
               
               Conread position:249-440
               
               
               Cow position:chrX:37048548-37048739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):74, 26

               
               
               Conread position:254-442
               
               
               Cow position:chrX:48371119-48370936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):166, 68

               
               
               Conread position:255-369
               
               
               Cow position:chrX:25282988-25283105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):65, 35

               
               
               Conread position:255-438
               
               
               Cow position:chrX:17271254-17271446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:260-442
               
               
               Cow position:chrX:20583044-20582869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):141, 74

               
               
               Conread position:262-390
               
               
               Cow position:chrX:32747703-32747571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:266-456
               
               
               Cow position:chrX:8991901-8991712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:271-409
               
               
               Cow position:chrX:35284636-35284488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:272-446
               
               
               Cow position:chrX:31256877-31256702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:275-442
               
               
               Cow position:chrX:1505718-1505550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):48, 143

               
               
               Conread position:277-439
               
               
               Cow position:chrX:10373322-10373158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:277-442
               
               
               Cow position:chrX:10437662-10437826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):83, 10

               
               
               Conread position:278-386
               
               
               Cow position:chrX:32870448-32870556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:279-442
               
               
               Cow position:chrX:35609993-35609825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:282-442
               
               
               Cow position:chrX:42338944-42339097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):43, 86

               
               
               Conread position:284-456
               
               
               Cow position:chrX:41403979-41403797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:284-456
               
               
               Cow position:chrX:41410527-41410345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:287-442
               
               
               Cow position:chrX:21665597-21665755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:289-440
               
               
               Cow position:chrX:19019110-19019270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:290-442
               
               
               Cow position:chrX:42086851-42086700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:302-452
               
               
               Cow position:chrX:48287473-48287624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):104, 96

               
               
               Conread position:304-452
               
               
               Cow position:chrX:29770199-29770350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:307-442
               
               
               Cow position:chrX:7806350-7806217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):113, 13

               
               
               Conread position:314-452
               
               
               Cow position:chrX:46429893-46430029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):5, 106

               
               
               Conread position:320-437
               
               
               Cow position:chrX:11806055-11806173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:320-442
               
               
               Cow position:chrX:41271249-41271369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 100

               
               
               Conread position:322-442
               
               
               Cow position:chrX:24149597-24149478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:328-442
               
               
               Cow position:chrX:42855365-42855247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):40, 0
Show alignments to all cow chromosomes.
Conread position:	2-411
Cow position:	chrX:25815597-25816033 (view UCSC Genome Browser custom track)
Alignm length:	446
Alignm identity:	309
Alignm E-value:	4e-39
Alignm gaps (pig, cow):	15, 6
Conread position:	7-440
Cow position:	chrX:34544058-34543627 (view UCSC Genome Browser custom track)
Alignm length:	443
Alignm identity:	311
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 112
Conread position:	13-449
Cow position:	chrX:44731863-44731426 (view UCSC Genome Browser custom track)
Alignm length:	438
Alignm identity:	113
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	409, 0
Conread position:	43-442
Cow position:	chrX:7337078-7336667 (view UCSC Genome Browser custom track)
Alignm length:	421
Alignm identity:	267
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	70, 43
Conread position:	47-442
Cow position:	chrX:42011515-42011118 (view UCSC Genome Browser custom track)
Alignm length:	411
Alignm identity:	272
Alignm E-value:	6e-32
Alignm gaps (pig, cow):	83, 30
Conread position:	49-405
Cow position:	chrX:2523447-2523780 (view UCSC Genome Browser custom track)
Alignm length:	362
Alignm identity:	255
Alignm E-value:	1e-39
Alignm gaps (pig, cow):	52, 7
Conread position:	49-430
Cow position:	chrX:40789440-40789055 (view UCSC Genome Browser custom track)
Alignm length:	396
Alignm identity:	264
Alignm E-value:	9e-35
Alignm gaps (pig, cow):	13, 63
Conread position:	49-442
Cow position:	chrX:45502391-45501987 (view UCSC Genome Browser custom track)
Alignm length:	409
Alignm identity:	289
Alignm E-value:	0
Alignm gaps (pig, cow):	32, 169
Conread position:	54-324
Cow position:	chrX:39353022-39352740 (view UCSC Genome Browser custom track)
Alignm length:	286
Alignm identity:	207
Alignm E-value:	3e-36
Alignm gaps (pig, cow):	52, 163
Conread position:	55-284
Cow position:	chrX:32910346-32910102 (view UCSC Genome Browser custom track)
Alignm length:	247
Alignm identity:	175
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	26, 16
Conread position:	59-279
Cow position:	chrX:39180003-39180230 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	168
Alignm E-value:	6e-31
Alignm gaps (pig, cow):	41, 16
Conread position:	59-430
Cow position:	chrX:24287712-24288077 (view UCSC Genome Browser custom track)
Alignm length:	377
Alignm identity:	266
Alignm E-value:	0
Alignm gaps (pig, cow):	120, 7
Conread position:	59-433
Cow position:	chrX:20584555-20584166 (view UCSC Genome Browser custom track)
Alignm length:	393
Alignm identity:	298
Alignm E-value:	0
Alignm gaps (pig, cow):	46, 16
Conread position:	59-440
Cow position:	chrX:1499899-1499510 (view UCSC Genome Browser custom track)
Alignm length:	400
Alignm identity:	295
Alignm E-value:	0
Alignm gaps (pig, cow):	47, 159
Conread position:	59-442
Cow position:	chrX:30133092-30133490 (view UCSC Genome Browser custom track)
Alignm length:	401
Alignm identity:	287
Alignm E-value:	0
Alignm gaps (pig, cow):	20, 33
Conread position:	60-440
Cow position:	chrX:34792080-34792470 (view UCSC Genome Browser custom track)
Alignm length:	400
Alignm identity:	293
Alignm E-value:	0
Alignm gaps (pig, cow):	60, 18
Conread position:	60-442
Cow position:	chrX:34753948-34754353 (view UCSC Genome Browser custom track)
Alignm length:	409
Alignm identity:	279
Alignm E-value:	4e-39
Alignm gaps (pig, cow):	11, 57
Conread position:	62-268
Cow position:	chrX:23089079-23088870 (view UCSC Genome Browser custom track)
Alignm length:	215
Alignm identity:	162
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	8, 151
Conread position:	62-325
Cow position:	chrX:11325865-11326141 (view UCSC Genome Browser custom track)
Alignm length:	278
Alignm identity:	207
Alignm E-value:	7.00649e-44
Alignm gaps (pig, cow):	21, 159
Conread position:	63-287
Cow position:	chrX:27668720-27668963 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	184
Alignm E-value:	3e-34
Alignm gaps (pig, cow):	18, 163