Cow genome map


           Conread name:
           Ss1.1-rlin39_j20.5
        

               Conread position:
               1015-1195
               

               Cow position:
               chr9:42214847-42215030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               1015-1227
               

               Cow position:
               chr9:8723231-8723446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               91, 51
               

               Conread position:
               1015-1246
               

               Cow position:
               chr9:35224752-35224519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               12, 48
               

               Conread position:
               1039-1218
               

               Cow position:
               chr9:26862681-26862498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               45, 38
               

               Conread position:
               1053-1242
               

               Cow position:
               chr9:4701722-4701913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               12, 60
               

               Conread position:
               1054-1217
               

               Cow position:
               chr9:62757410-62757247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               20, 147
               

               Conread position:
               1056-1203
               

               Cow position:
               chr9:23858384-23858238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               18, 79
               

               Conread position:
               1059-1246
               

               Cow position:
               chr9:12890261-12890071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               1068-1215
               

               Cow position:
               chr9:41296841-41296690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               1074-1218
               

               Cow position:
               chr9:55262498-55262649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               21, 0
               
Show alignments to all cow chromosomes.