Cow genome map
| Conread name: | Ss1.1-rlnt23c_n4.5 |
| Conread position: | 1-299 |
| Cow position: | chr14:3060963-3060665 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-319 |
| Cow position: | chr14:3155515-3155833 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 119, 110 |
| Conread position: | 1-387 |
| Cow position: | chr14:447863-448249 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 364, 371 |
| Conread position: | 1-413 |
| Cow position: | chr14:680833-681245 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-482 |
| Cow position: | chr14:3080488-3080007 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 360 |
| Conread position: | 1-486 |
| Cow position: | chr14:680581-681066 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 1-487 |
| Cow position: | chr14:680749-681235 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-487 |
| Cow position: | chr14:3127916-3127432 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 308 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 1-490 |
| Cow position: | chr14:433916-434405 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 1-492 |
| Cow position: | chr14:680329-680820 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 1-492 |
| Cow position: | chr14:3061215-3060724 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 287 |
| Conread position: | 1-492 |
| Cow position: | chr14:3061467-3060976 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 209 |
| Conread position: | 1-492 |
| Cow position: | chr14:3061551-3061060 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 206 |
| Conread position: | 1-492 |
| Cow position: | chr14:3080908-3080417 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 312 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 1-493 |
| Cow position: | chr14:3080992-3080500 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 24 |
| Conread position: | 1-506 |
| Cow position: | chr14:3061383-3060878 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 1-516 |
| Cow position: | chr14:3080152-3079636 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 2-271 |
| Cow position: | chr14:663380-663111 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 120, 124 |
| Conread position: | 2-312 |
| Cow position: | chr14:3156173-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-328 |
| Cow position: | chr14:3100730-3100404 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 188, 201 |
| Conread position: | 2-394 |
| Cow position: | chr14:3156089-3156481 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 2-407 |
| Cow position: | chr14:3155432-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 399 |
| Conread position: | 2-478 |
| Cow position: | chr14:3127747-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 92, 99 |
| Conread position: | 2-480 |
| Cow position: | chr14:3061130-3060652 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 195 |
| Conread position: | 2-492 |
| Cow position: | chr14:447696-448186 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 2-492 |
| Cow position: | chr14:680666-681156 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 2-492 |
| Cow position: | chr14:3061718-3061228 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 196 |
| Conread position: | 2-492 |
| Cow position: | chr14:3080403-3079913 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 108 |
| Conread position: | 2-492 |
| Cow position: | chr14:3080571-3080081 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 2-492 |
| Cow position: | chr14:3127999-3127509 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 118 |
| Conread position: | 2-492 |
| Cow position: | chr14:3155921-3156411 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 118, 92 |
| Conread position: | 2-492 |
| Cow position: | chr14:25895137-25895627 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 124 |
| Conread position: | 2-492 |
| Cow position: | chr14:25895221-25895711 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 2-492 |
| Cow position: | chr14:25895473-25895963 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 2-493 |
| Cow position: | chr14:3080823-3080332 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 107 |
| Conread position: | 2-493 |
| Cow position: | chr14:3127831-3127340 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 2-494 |
| Cow position: | chr14:447780-448273 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 37 |
| Conread position: | 2-504 |
| Cow position: | chr14:447612-448115 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 2-504 |
| Cow position: | chr14:3080739-3080236 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 2-505 |
| Cow position: | chr14:680498-680999 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 107 |
| Conread position: | 3-501 |
| Cow position: | chr14:680415-680914 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 4-355 |
| Cow position: | chr14:663462-663111 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 98, 93 |
| Conread position: | 4-363 |
| Cow position: | chr14:25895979-25896338 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 280, 292 |
| Conread position: | 4-479 |
| Cow position: | chr14:25895811-25896286 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 4-491 |
| Cow position: | chr14:25895055-25895542 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 209 |
| Conread position: | 4-492 |
| Cow position: | chr14:3061632-3061144 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 287 |
| Conread position: | 4-492 |
| Cow position: | chr14:3080317-3079829 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 5-355 |
| Cow position: | chr14:25836745-25837095 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 5-429 |
| Cow position: | chr14:25895728-25896152 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 266 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 5-492 |
| Cow position: | chr14:433836-434323 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 102 |
| Conread position: | 5-492 |
| Cow position: | chr14:3080232-3079745 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 104 |
| Conread position: | 5-492 |
| Cow position: | chr14:3080652-3080165 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 5-492 |
| Cow position: | chr14:3128164-3127677 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 108 |
| Conread position: | 5-492 |
| Cow position: | chr14:25894972-25895459 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 5-492 |
| Cow position: | chr14:25895392-25895879 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 5-493 |
| Cow position: | chr14:25895560-25896048 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 305 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 185, 195 |
| Conread position: | 22-492 |
| Cow position: | chr14:3061780-3061312 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 342, 11 |
| Conread position: | 40-492 |
| Cow position: | chr14:3100942-3100492 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 42-492 |
| Cow position: | chr14:447568-448018 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 44-492 |
| Cow position: | chr14:25895347-25895795 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 420 |
| Conread position: | 56-402 |
| Cow position: | chr14:3127609-3127263 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 133, 142 |
| Conread position: | 56-479 |
| Cow position: | chr14:3156059-3156482 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 56-493 |
| Cow position: | chr14:3100844-3100407 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 256 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-510 |
| Cow position: | chr14:3155408-3155857 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 85-498 |
| Cow position: | chr14:680245-680657 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 404, 0 |
| Conread position: | 99-511 |
| Cow position: | chr14:433762-434172 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 128-429 |
| Cow position: | chr14:663422-663121 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 162, 166 |
| Conread position: | 137-479 |
| Cow position: | chr14:663496-663155 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 140-492 |
| Cow position: | chr14:3081021-3080669 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 182-492 |
| Cow position: | chr14:433761-434071 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 213-465 |
| Cow position: | chr14:438345-438595 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 229-493 |
| Cow position: | chr14:663488-663225 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 139, 15 |
Show alignments to all cow chromosomes.