Cow genome map

Conread name: Ss1.1-rlnt23c_n4.5

Conread position: 1-188
Cow position:
Alignm length: 189
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 116, 109

Conread position: 1-261
Cow position:
Alignm length: 262
Alignm identity: 168
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 106

Conread position: 1-338
Cow position:
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 108

Conread position: 1-355
Cow position:
Alignm length: 359
Alignm identity: 229
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 115, 94

Conread position: 1-355
Cow position:
Alignm length: 356
Alignm identity: 231
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 96, 100

Conread position: 1-380
Cow position:
Alignm length: 385
Alignm identity: 237
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 113

Conread position: 1-405
Cow position:
Alignm length: 406
Alignm identity: 250
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 364, 371

Conread position: 1-410
Cow position:
Alignm length: 412
Alignm identity: 255
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 24

Conread position: 1-412
Cow position:
Alignm length: 424
Alignm identity: 263
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 26, 35

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 430

Conread position: 1-492
Cow position:
Alignm length: 496
Alignm identity: 304
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 203, 189

Conread position: 1-492
Cow position:
Alignm length: 495
Alignm identity: 310
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 28

Conread position: 1-492
Cow position:
Alignm length: 495
Alignm identity: 298
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 355, 366

Conread position: 1-492
Cow position:
Alignm length: 495
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 14

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 25

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 485, 481

Conread position: 1-493
Cow position:
Alignm length: 497
Alignm identity: 313
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 36, 28

Conread position: 1-495
Cow position:
Alignm length: 503
Alignm identity: 310
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 121, 109

Conread position: 1-503
Cow position:
Alignm length: 508
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 25

Conread position: 1-504
Cow position:
Alignm length: 506
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 203

Conread position: 1-507
Cow position:
Alignm length: 507
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-507
Cow position:
Alignm length: 507
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 0

Conread position: 1-511
Cow position:
Alignm length: 517
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 112

Conread position: 2-299
Cow position:
Alignm length: 298
Alignm identity: 195
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 2-352
Cow position:
Alignm length: 352
Alignm identity: 225
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 114, 104

Conread position: 2-361
Cow position:
Alignm length: 361
Alignm identity: 219
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 268, 261

Conread position: 2-381
Cow position:
Alignm length: 382
Alignm identity: 237
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 188, 202

Conread position: 2-394
Cow position:
Alignm length: 396
Alignm identity: 249
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 127, 122

Conread position: 2-409
Cow position:
Alignm length: 410
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 116

Conread position: 2-410
Cow position:
Alignm length: 411
Alignm identity: 263
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 286, 261

Conread position: 2-429
Cow position:
Alignm length: 430
Alignm identity: 275
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 30, 19

Conread position: 2-430
Cow position:
Alignm length: 436
Alignm identity: 262
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 26, 20

Conread position: 2-439
Cow position:
Alignm length: 441
Alignm identity: 283
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 19, 26

Conread position: 2-469
Cow position:
Alignm length: 472
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 24

Conread position: 2-479
Cow position:
Alignm length: 481
Alignm identity: 280
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 34

Conread position: 2-479
Cow position:
Alignm length: 481
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 107

Conread position: 2-479
Cow position:
Alignm length: 479
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 108

Conread position: 2-492
Cow position:
Alignm length: 501
Alignm identity: 307
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 306, 485

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 296
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 115, 107

Conread position: 2-492
Cow position:
Alignm length: 492
Alignm identity: 305
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 368, 360

Conread position: 2-492
Cow position:
Alignm length: 492
Alignm identity: 295
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 102, 97

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 19

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 309
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 72, 92

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 288
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 378, 374

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 19

Conread position: 2-492
Cow position:
Alignm length: 493
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 107

Conread position: 2-492
Cow position:
Alignm length: 495
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 108

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 107

Conread position: 2-492
Cow position:
Alignm length: 493
Alignm identity: 304
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 111, 118

Conread position: 2-492
Cow position:
Alignm length: 493
Alignm identity: 304
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 281, 276

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 297
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 116, 107

Conread position: 2-492
Cow position:
Alignm length: 492
Alignm identity: 293
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 281, 276

Conread position: 2-492
Cow position:
Alignm length: 493
Alignm identity: 298
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 111, 116

Conread position: 2-492
Cow position:
Alignm length: 492
Alignm identity: 297
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 368, 360

Conread position: 2-492
Cow position:
Alignm length: 493
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 276

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 306
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 34, 24

Conread position: 2-493
Cow position:
Alignm length: 496
Alignm identity: 288
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 19

Conread position: 2-493
Cow position:
Alignm length: 495
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 31

Conread position: 2-493
Cow position:
Alignm length: 493
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 23

Conread position: 2-493
Cow position:
Alignm length: 493
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 276

Conread position: 2-493
Cow position:
Alignm length: 494
Alignm identity: 302
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 49, 32

Conread position: 2-493
Cow position:
Alignm length: 496
Alignm identity: 312
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 125, 108

Conread position: 2-493
Cow position:
Alignm length: 495
Alignm identity: 292
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 108

Conread position: 2-496
Cow position:
Alignm length: 500
Alignm identity: 306
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 285, 273

Conread position: 2-500
Cow position:
Alignm length: 501
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 370

Conread position: 3-492
Cow position:
Alignm length: 492
Alignm identity: 302
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 115, 107

Conread position: 3-492
Cow position:
Alignm length: 493
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 107

Conread position: 3-492
Cow position:
Alignm length: 493
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 107

Conread position: 3-492
Cow position:
Alignm length: 492
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 275

Conread position: 3-511
Cow position:
Alignm length: 514
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 201

Conread position: 4-361
Cow position:
Alignm length: 359
Alignm identity: 217
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 125, 120

Conread position: 4-394
Cow position:
Alignm length: 395
Alignm identity: 259
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 23, 32

Conread position: 4-400
Cow position:
Alignm length: 411
Alignm identity: 260
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 34, 38

Conread position: 4-473
Cow position:
Alignm length: 480
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 4-478
Cow position:
Alignm length: 476
Alignm identity: 287
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 274, 259

Conread position: 4-485
Cow position:
Alignm length: 486
Alignm identity: 292
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 69, 371

Conread position: 4-492
Cow position:
Alignm length: 503
Alignm identity: 305
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 124, 119

Conread position: 4-492
Cow position:
Alignm length: 492
Alignm identity: 296
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 27, 21

Conread position: 4-492
Cow position:
Alignm length: 491
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 263

Conread position: 5-480
Cow position:
Alignm length: 478
Alignm identity: 298
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 362, 367

Conread position: 5-480
Cow position:
Alignm length: 479
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 21

Conread position: 5-487
Cow position:
Alignm length: 490
Alignm identity: 311
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 41, 21

Conread position: 5-492
Cow position:
Alignm length: 490
Alignm identity: 302
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 20, 31

Conread position: 5-492
Cow position:
Alignm length: 490
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 91

Conread position: 5-514
Cow position:
Alignm length: 511
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 367

Conread position: 11-492
Cow position:
Alignm length: 486
Alignm identity: 302
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 230, 446

Conread position: 12-369
Cow position:
Alignm length: 362
Alignm identity: 228
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 23, 179

Conread position: 29-410
Cow position:
Alignm length: 385
Alignm identity: 239
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 77, 90

Conread position: 34-492
Cow position:
Alignm length: 459
Alignm identity: 286
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 22, 0

Conread position: 34-493
Cow position:
Alignm length: 463
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 77

Conread position: 35-493
Cow position:
Alignm length: 460
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 85

Conread position: 36-501
Cow position:
Alignm length: 469
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 329

Conread position: 40-309
Cow position:
Alignm length: 273
Alignm identity: 194
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 88, 20

Conread position: 40-323
Cow position:
Alignm length: 287
Alignm identity: 183
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 70

Conread position: 41-492
Cow position:
Alignm length: 455
Alignm identity: 271
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 77, 68

Conread position: 42-493
Cow position:
Alignm length: 455
Alignm identity: 265
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 71, 75

Conread position: 43-300
Cow position:
Alignm length: 259
Alignm identity: 169
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 157, 148

Conread position: 44-386
Cow position:
Alignm length: 344
Alignm identity: 224
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 252, 246

Conread position: 44-478
Cow position:
Alignm length: 446
Alignm identity: 274
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 67, 75

Conread position: 54-480
Cow position:
Alignm length: 430
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 58

Conread position: 55-492
Cow position:
Alignm length: 439
Alignm identity: 268
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 243, 222

Conread position: 56-492
Cow position:
Alignm length: 440
Alignm identity: 278
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 41, 45

Conread position: 56-492
Cow position:
Alignm length: 439
Alignm identity: 260
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 134, 148

Conread position: 56-492
Cow position:
Alignm length: 441
Alignm identity: 276
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 48, 62

Conread position: 56-493
Cow position:
Alignm length: 438
Alignm identity: 271
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 58-356
Cow position:
Alignm length: 301
Alignm identity: 189
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 140, 131

Conread position: 60-492
Cow position:
Alignm length: 437
Alignm identity: 270
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 265, 380

Conread position: 60-507
Cow position:
Alignm length: 454
Alignm identity: 278
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 70, 58

Conread position: 62-316
Cow position:
Alignm length: 256
Alignm identity: 169
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 235, 231

Conread position: 62-492
Cow position:
Alignm length: 433
Alignm identity: 257
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 128, 142

Conread position: 65-492
Cow position:
Alignm length: 429
Alignm identity: 266
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 55, 45

Conread position: 71-492
Cow position:
Alignm length: 423
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 48

Conread position: 72-492
Cow position:
Alignm length: 425
Alignm identity: 269
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 30, 25

Conread position: 80-398
Cow position:
Alignm length: 322
Alignm identity: 205
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 42, 50

Conread position: 85-399
Cow position:
Alignm length: 316
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 188

Conread position: 118-399
Cow position:
Alignm length: 289
Alignm identity: 182
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 99

Conread position: 123-502
Cow position:
Alignm length: 382
Alignm identity: 226
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 163, 154

Conread position: 124-492
Cow position:
Alignm length: 370
Alignm identity: 228
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 162, 153

Conread position: 125-393
Cow position:
Alignm length: 271
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 19

Conread position: 127-440
Cow position:
Alignm length: 315
Alignm identity: 193
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 253, 237

Conread position: 128-439
Cow position:
Alignm length: 313
Alignm identity: 193
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 153, 149

Conread position: 128-469
Cow position:
Alignm length: 344
Alignm identity: 227
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 145, 165

Conread position: 142-448
Cow position:
Alignm length: 310
Alignm identity: 194
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 273, 0

Conread position: 146-431
Cow position:
Alignm length: 288
Alignm identity: 186
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 59, 43

Conread position: 146-492
Cow position:
Alignm length: 347
Alignm identity: 209
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 158-478
Cow position:
Alignm length: 324
Alignm identity: 204
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 33

Conread position: 160-514
Cow position:
Alignm length: 359
Alignm identity: 237
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 126, 117

Conread position: 193-510
Cow position:
Alignm length: 328
Alignm identity: 207
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 35, 104

Conread position: 204-469
Cow position:
Alignm length: 266
Alignm identity: 179
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 208-430
Cow position:
Alignm length: 225
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 178, 148

Conread position: 217-492
Cow position:
Alignm length: 277
Alignm identity: 174
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 22, 16

Conread position: 230-467
Cow position:
Alignm length: 242
Alignm identity: 164
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 50

Conread position: 232-457
Cow position:
Alignm length: 228
Alignm identity: 157
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 131, 14

Conread position: 238-477
Cow position:
Alignm length: 241
Alignm identity: 155
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 48, 39

Show alignments to all cow chromosomes.