Cow genome map
| Conread name: | Ss1.1-rlnt23c_n4.5 |
| Conread position: | 1-446 |
| Cow position: | chr21:12608405-12607960 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 294 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 31, 44 |
| Conread position: | 1-479 |
| Cow position: | chr21:12608657-12608179 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 1-479 |
| Cow position: | chr21:34223031-34222553 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 116, 109 |
| Conread position: | 1-492 |
| Cow position: | chr21:12608489-12607998 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 28 |
| Conread position: | 1-492 |
| Cow position: | chr21:12658937-12659428 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 39 |
| Conread position: | 1-492 |
| Cow position: | chr21:12659357-12659848 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 108 |
| Conread position: | 1-492 |
| Cow position: | chr21:12659441-12659932 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 2-440 |
| Cow position: | chr21:12608824-12608386 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 50, 30 |
| Conread position: | 2-471 |
| Cow position: | chr21:12659526-12659995 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 42 |
| Conread position: | 2-492 |
| Cow position: | chr21:12608908-12608418 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 112, 126 |
| Conread position: | 2-492 |
| Cow position: | chr21:12659022-12659512 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 2-492 |
| Cow position: | chr21:12659106-12659596 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 2-492 |
| Cow position: | chr21:12659190-12659680 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 108 |
| Conread position: | 2-492 |
| Cow position: | chr21:12659274-12659764 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 294 |
| Conread position: | 3-492 |
| Cow position: | chr21:12658855-12659344 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 33 |
| Conread position: | 4-393 |
| Cow position: | chr21:11852449-11852838 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 4-407 |
| Cow position: | chr21:12659612-12660015 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-513 |
| Cow position: | chr21:11852366-11852875 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 198, 194 |
| Conread position: | 24-492 |
| Cow position: | chr21:12658793-12659260 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 11 |
| Conread position: | 35-493 |
| Cow position: | chr21:12608707-12608249 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 290 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 42-288 |
| Cow position: | chr21:12608196-12607950 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-449 |
| Cow position: | chr21:11852320-11852726 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 87 |
| Conread position: | 56-478 |
| Cow position: | chr21:12608518-12608096 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 270 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 62, 57 |
Show alignments to all cow chromosomes.