Cow genome map

Conread name: Ss1.1-rlnt23c_n4.5

Conread position: 1-215
Cow position:
Alignm length: 217
Alignm identity: 145
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 28, 35

Conread position: 1-217
Cow position:
Alignm length: 218
Alignm identity: 152
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 30, 20

Conread position: 1-230
Cow position:
Alignm length: 232
Alignm identity: 159
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 115, 109

Conread position: 1-238
Cow position:
Alignm length: 240
Alignm identity: 160
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 35

Conread position: 1-271
Cow position:
Alignm length: 272
Alignm identity: 178
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 230, 235

Conread position: 1-326
Cow position:
Alignm length: 327
Alignm identity: 204
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 117, 110

Conread position: 1-354
Cow position:
Alignm length: 355
Alignm identity: 213
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 28, 35

Conread position: 1-369
Cow position:
Alignm length: 372
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 128

Conread position: 1-406
Cow position:
Alignm length: 409
Alignm identity: 268
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 212, 189

Conread position: 1-408
Cow position:
Alignm length: 414
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 35

Conread position: 1-410
Cow position:
Alignm length: 411
Alignm identity: 241
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 380, 373

Conread position: 1-411
Cow position:
Alignm length: 412
Alignm identity: 253
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 115, 106

Conread position: 1-456
Cow position:
Alignm length: 457
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 35

Conread position: 1-471
Cow position:
Alignm length: 473
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 196

Conread position: 1-482
Cow position:
Alignm length: 489
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 108

Conread position: 1-492
Cow position:
Alignm length: 495
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 24

Conread position: 1-492
Cow position:
Alignm length: 495
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 105

Conread position: 1-492
Cow position:
Alignm length: 494
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 284

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 108

Conread position: 1-492
Cow position:
Alignm length: 494
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 24

Conread position: 1-492
Cow position:
Alignm length: 492
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-492
Cow position:
Alignm length: 493
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 109

Conread position: 1-492
Cow position:
Alignm length: 496
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 108

Conread position: 1-492
Cow position:
Alignm length: 494
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 104

Conread position: 1-507
Cow position:
Alignm length: 511
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 24

Conread position: 2-299
Cow position:
Alignm length: 299
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 188, 195

Conread position: 2-303
Cow position:
Alignm length: 306
Alignm identity: 205
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 20, 45

Conread position: 2-355
Cow position:
Alignm length: 356
Alignm identity: 226
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 125, 111

Conread position: 2-355
Cow position:
Alignm length: 356
Alignm identity: 239
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 35, 23

Conread position: 2-355
Cow position:
Alignm length: 355
Alignm identity: 222
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 295, 161

Conread position: 2-360
Cow position:
Alignm length: 361
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 18

Conread position: 2-394
Cow position:
Alignm length: 394
Alignm identity: 246
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 284, 261

Conread position: 2-409
Cow position:
Alignm length: 409
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 18

Conread position: 2-409
Cow position:
Alignm length: 410
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 128

Conread position: 2-410
Cow position:
Alignm length: 411
Alignm identity: 244
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 35, 19

Conread position: 2-458
Cow position:
Alignm length: 461
Alignm identity: 272
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 35, 27

Conread position: 2-469
Cow position:
Alignm length: 470
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 188

Conread position: 2-478
Cow position:
Alignm length: 478
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 23

Conread position: 2-485
Cow position:
Alignm length: 488
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 20

Conread position: 2-492
Cow position:
Alignm length: 492
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 354

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 292
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 115, 108

Conread position: 2-492
Cow position:
Alignm length: 492
Alignm identity: 293
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 281, 270

Conread position: 2-492
Cow position:
Alignm length: 492
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 270

Conread position: 2-492
Cow position:
Alignm length: 491
Alignm identity: 277
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 2-492
Cow position:
Alignm length: 495
Alignm identity: 287
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 185, 198

Conread position: 2-493
Cow position:
Alignm length: 499
Alignm identity: 299
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 112, 118

Conread position: 2-493
Cow position:
Alignm length: 494
Alignm identity: 308
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 35, 23

Conread position: 2-507
Cow position:
Alignm length: 508
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 188

Conread position: 2-507
Cow position:
Alignm length: 507
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 359

Conread position: 2-507
Cow position:
Alignm length: 507
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 23

Conread position: 3-226
Cow position:
Alignm length: 226
Alignm identity: 157
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 28, 17

Conread position: 3-322
Cow position:
Alignm length: 322
Alignm identity: 220
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 33, 25

Conread position: 3-388
Cow position:
Alignm length: 389
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 104

Conread position: 3-429
Cow position:
Alignm length: 427
Alignm identity: 260
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 3-491
Cow position:
Alignm length: 490
Alignm identity: 301
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 333, 175

Conread position: 3-492
Cow position:
Alignm length: 491
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 106

Conread position: 4-353
Cow position:
Alignm length: 355
Alignm identity: 243
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 31, 20

Conread position: 4-429
Cow position:
Alignm length: 429
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 103

Conread position: 4-443
Cow position:
Alignm length: 441
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 397

Conread position: 4-491
Cow position:
Alignm length: 488
Alignm identity: 300
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 185, 0

Conread position: 5-291
Cow position:
Alignm length: 292
Alignm identity: 192
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 28, 20

Conread position: 5-394
Cow position:
Alignm length: 392
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 361

Conread position: 5-429
Cow position:
Alignm length: 427
Alignm identity: 251
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 185, 199

Conread position: 5-439
Cow position:
Alignm length: 438
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 92

Conread position: 5-467
Cow position:
Alignm length: 471
Alignm identity: 290
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 139, 70

Conread position: 5-485
Cow position:
Alignm length: 484
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 101

Conread position: 11-492
Cow position:
Alignm length: 483
Alignm identity: 296
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 356, 263

Conread position: 19-492
Cow position:
Alignm length: 478
Alignm identity: 304
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 29

Conread position: 22-478
Cow position:
Alignm length: 460
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 85

Conread position: 31-314
Cow position:
Alignm length: 288
Alignm identity: 189
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 87, 74

Conread position: 35-492
Cow position:
Alignm length: 461
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 78

Conread position: 40-507
Cow position:
Alignm length: 472
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 25

Conread position: 44-375
Cow position:
Alignm length: 335
Alignm identity: 217
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 76, 67

Conread position: 44-440
Cow position:
Alignm length: 397
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 56-348
Cow position:
Alignm length: 297
Alignm identity: 198
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 13, 25

Conread position: 56-407
Cow position:
Alignm length: 354
Alignm identity: 224
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 240, 188

Conread position: 56-426
Cow position:
Alignm length: 374
Alignm identity: 238
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 63, 53

Conread position: 56-477
Cow position:
Alignm length: 425
Alignm identity: 251
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 225, 207

Conread position: 56-479
Cow position:
Alignm length: 425
Alignm identity: 257
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 305, 316

Conread position: 58-429
Cow position:
Alignm length: 374
Alignm identity: 223
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 137, 142

Conread position: 60-492
Cow position:
Alignm length: 434
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 296

Conread position: 62-492
Cow position:
Alignm length: 432
Alignm identity: 264
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 362, 202

Conread position: 62-492
Cow position:
Alignm length: 441
Alignm identity: 274
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 128, 139

Conread position: 64-492
Cow position:
Alignm length: 429
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 67-492
Cow position:
Alignm length: 431
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 146

Conread position: 67-492
Cow position:
Alignm length: 427
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 305

Conread position: 70-430
Cow position:
Alignm length: 365
Alignm identity: 236
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 38, 49

Conread position: 79-444
Cow position:
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 30

Conread position: 86-355
Cow position:
Alignm length: 272
Alignm identity: 189
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 36, 25

Conread position: 88-486
Cow position:
Alignm length: 399
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 99-381
Cow position:
Alignm length: 285
Alignm identity: 189
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 28, 24

Conread position: 99-479
Cow position:
Alignm length: 382
Alignm identity: 227
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 26

Conread position: 105-492
Cow position:
Alignm length: 391
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 84

Conread position: 116-492
Cow position:
Alignm length: 379
Alignm identity: 234
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 21

Conread position: 127-418
Cow position:
Alignm length: 297
Alignm identity: 193
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 63, 77

Conread position: 130-479
Cow position:
Alignm length: 353
Alignm identity: 215
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 73, 63

Conread position: 151-349
Cow position:
Alignm length: 201
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 130, 125

Conread position: 152-492
Cow position:
Alignm length: 342
Alignm identity: 207
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 61

Conread position: 163-470
Cow position:
Alignm length: 313
Alignm identity: 208
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 113

Conread position: 164-492
Cow position:
Alignm length: 330
Alignm identity: 207
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 198, 208

Conread position: 164-500
Cow position:
Alignm length: 340
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 36

Conread position: 170-467
Cow position:
Alignm length: 300
Alignm identity: 205
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 190, 196

Conread position: 212-439
Cow position:
Alignm length: 230
Alignm identity: 157
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 78, 83

Conread position: 212-468
Cow position:
Alignm length: 257
Alignm identity: 160
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 212-492
Cow position:
Alignm length: 281
Alignm identity: 173
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 220-492
Cow position:
Alignm length: 275
Alignm identity: 188
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 11, 153

Conread position: 223-484
Cow position:
Alignm length: 265
Alignm identity: 170
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 65, 54

Conread position: 233-492
Cow position:
Alignm length: 262
Alignm identity: 183
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 40, 52

Conread position: 235-499
Cow position:
Alignm length: 266
Alignm identity: 173
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 206, 213

Conread position: 245-507
Cow position:
Alignm length: 264
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 120, 127

Show alignments to all cow chromosomes.