Cow genome map
| Conread name: | Ss1.1-rlnt23c_n4.5 |
| Conread position: | 1-237 |
| Cow position: | chr4:65546416-65546181 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 1-268 |
| Cow position: | chr4:65494663-65494396 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 128, 122 |
| Conread position: | 1-344 |
| Cow position: | chr4:65703563-65703220 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 1-393 |
| Cow position: | chr4:65702858-65702466 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 282, 274 |
| Conread position: | 1-394 |
| Cow position: | chr4:65146692-65147088 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 1-467 |
| Cow position: | chr4:65121553-65122019 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 43 |
| Conread position: | 1-473 |
| Cow position: | chr4:65261616-65261144 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 1-491 |
| Cow position: | chr4:65703479-65702992 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 1-492 |
| Cow position: | chr4:65350065-65350553 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 1-492 |
| Cow position: | chr4:65495005-65494508 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 377 |
| Conread position: | 1-499 |
| Cow position: | chr4:65350149-65350644 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 206 |
| Conread position: | 1-514 |
| Cow position: | chr4:65494921-65494400 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 114 |
| Conread position: | 2-254 |
| Cow position: | chr4:65157952-65158205 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 2-313 |
| Cow position: | chr4:65350483-65350794 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 125, 121 |
| Conread position: | 2-341 |
| Cow position: | chr4:65146441-65146780 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 226, 242 |
| Conread position: | 2-354 |
| Cow position: | chr4:65121722-65122074 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 127, 123 |
| Conread position: | 2-443 |
| Cow position: | chr4:65349898-65350339 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 126 |
| Conread position: | 2-470 |
| Cow position: | chr4:65349982-65350450 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 307 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 42 |
| Conread position: | 2-479 |
| Cow position: | chr4:65350318-65350792 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 3-388 |
| Cow position: | chr4:65261530-65261145 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 106 |
| Conread position: | 5-187 |
| Cow position: | chr4:65121164-65121346 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 39 |
| Conread position: | 5-511 |
| Cow position: | chr4:65261699-65261192 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 377 |
| Conread position: | 22-492 |
| Cow position: | chr4:65349834-65350304 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 38 |
| Conread position: | 25-402 |
| Cow position: | chr4:65146381-65146757 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 7, 22 |
| Conread position: | 44-485 |
| Cow position: | chr4:65703604-65703163 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 328 |
| Conread position: | 55-321 |
| Cow position: | chr4:65546447-65546181 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 18, 27 |
| Conread position: | 60-400 |
| Cow position: | chr4:65157833-65158182 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 86, 147 |
| Conread position: | 62-443 |
| Cow position: | chr4:65349790-65350171 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 89, 82 |
| Conread position: | 62-477 |
| Cow position: | chr4:65702881-65702466 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 126, 153 |
| Conread position: | 62-478 |
| Cow position: | chr4:65495301-65494864 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 179, 166 |
| Conread position: | 65-492 |
| Cow position: | chr4:65703667-65703240 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 302, 315 |
| Conread position: | 68-479 |
| Cow position: | chr4:65495022-65494605 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 28 |
| Conread position: | 74-492 |
| Cow position: | chr4:65261873-65261461 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 238, 59 |
| Conread position: | 78-504 |
| Cow position: | chr4:65121546-65121970 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 89-316 |
| Cow position: | chr4:65121164-65121391 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 35 |
| Conread position: | 133-393 |
| Cow position: | chr4:65422432-65422698 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 103, 234 |
| Conread position: | 144-478 |
| Cow position: | chr4:65157833-65158176 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 75, 132 |
| Conread position: | 146-479 |
| Cow position: | chr4:65702881-65702548 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 215, 226 |
| Conread position: | 146-492 |
| Cow position: | chr4:65349790-65350136 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 89, 82 |
| Conread position: | 163-315 |
| Cow position: | chr4:65146941-65147093 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-362 |
| Cow position: | chr4:65402055-65402254 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 177, 161 |
| Conread position: | 164-436 |
| Cow position: | chr4:65546421-65546145 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 197, 208 |
| Conread position: | 164-485 |
| Cow position: | chr4:65146435-65146755 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 167-469 |
| Cow position: | chr4:65146356-65146656 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 207-516 |
| Cow position: | chr4:65702904-65702597 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 210-451 |
| Cow position: | chr4:65495321-65495079 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 188, 199 |
| Conread position: | 212-368 |
| Cow position: | chr4:65121203-65121359 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 225-479 |
| Cow position: | chr4:65121132-65121386 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 228-492 |
| Cow position: | chr4:65157833-65158106 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 233 |
| Conread position: | 239-402 |
| Cow position: | chr4:65402048-65402210 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 128, 9 |
| Conread position: | 244-477 |
| Cow position: | chr4:65121544-65121777 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 37, 52 |
| Conread position: | 253-485 |
| Cow position: | chr4:65546416-65546184 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 195, 203 |
Show alignments to all cow chromosomes.