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Cow genome map

           
Conread name:
           
Ss1.1-rlyg12_g11.5
        

               
Conread position:
               
3-479
               

               
Cow position:
               
chr1:96081162-96081648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
39, 112
               

               
Conread position:
               
57-451
               

               
Cow position:
               
chr1:98360669-98360266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
78, 6
               

               
Conread position:
               
59-296
               

               
Cow position:
               
chr1:95687365-95687127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
70-479
               

               
Cow position:
               
chr1:48580879-48581297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
16, 126
               

               
Conread position:
               
70-492
               

               
Cow position:
               
chr1:75382743-75383143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
71-481
               

               
Cow position:
               
chr1:56225224-56225638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 82
               

               
Conread position:
               
74-334
               

               
Cow position:
               
chr1:31235177-31234908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
62, 7
               

               
Conread position:
               
76-279
               

               
Cow position:
               
chr1:19545343-19545141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
59, 20
               

               
Conread position:
               
76-387
               

               
Cow position:
               
chr1:44769358-44769033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
76-450
               

               
Cow position:
               
chr1:24729084-24728705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
58, 159
               

               
Conread position:
               
76-491
               

               
Cow position:
               
chr1:41696808-41697233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 294
               

               
Conread position:
               
76-492
               

               
Cow position:
               
chr1:57155646-57155240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
54, 74
               

               
Conread position:
               
77-492
               

               
Cow position:
               
chr1:28563813-28563381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
77-492
               

               
Cow position:
               
chr1:68818041-68817620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 41
               

               
Conread position:
               
78-296
               

               
Cow position:
               
chr1:69415961-69415738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
79-296
               

               
Cow position:
               
chr1:25886316-25886103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
79-381
               

               
Cow position:
               
chr1:53411151-53410856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
53, 70
               

               
Conread position:
               
79-428
               

               
Cow position:
               
chr1:91800847-91800484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
57, 193
               

               
Conread position:
               
79-451
               

               
Cow position:
               
chr1:3167314-3166936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
79-484
               

               
Cow position:
               
chr1:53622720-53623126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 37
               

               
Conread position:
               
81-485
               

               
Cow position:
               
chr1:69678565-69678151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 162
               

               
Conread position:
               
81-488
               

               
Cow position:
               
chr1:43352892-43352477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
82-299
               

               
Cow position:
               
chr1:43448064-43447853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
11, 71
               

               
Conread position:
               
83-295
               

               
Cow position:
               
chr1:77657827-77658043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
83-296
               

               
Cow position:
               
chr1:54163047-54162832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 95
               

               
Conread position:
               
83-447
               

               
Cow position:
               
chr1:6077659-6078025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
51, 15
               

               
Conread position:
               
83-490
               

               
Cow position:
               
chr1:57576004-57575586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
84-296
               

               
Cow position:
               
chr1:91142394-91142180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
7, 107
               

               
Conread position:
               
84-451
               

               
Cow position:
               
chr1:21460631-21461011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
84-490
               

               
Cow position:
               
chr1:13637907-13637487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
85-290
               

               
Cow position:
               
chr1:78794970-78794773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 13
               

               
Conread position:
               
85-292
               

               
Cow position:
               
chr1:52170819-52170610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 165
               

               
Conread position:
               
85-296
               

               
Cow position:
               
chr1:81180215-81179997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
85-355
               

               
Cow position:
               
chr1:56719082-56719346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
46, 41
               

               
Conread position:
               
85-387
               

               
Cow position:
               
chr1:97761391-97761676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
85-431
               

               
Cow position:
               
chr1:19465827-19466169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
46, 66
               

               
Conread position:
               
85-485
               

               
Cow position:
               
chr1:49317748-49317328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
50, 337
               

               
Conread position:
               
85-492
               

               
Cow position:
               
chr1:101713881-101714296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
86-254
               

               
Cow position:
               
chr1:98577243-98577409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
49, 71
               

               
Conread position:
               
86-289
               

               
Cow position:
               
chr1:1916468-1916261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
86-291
               

               
Cow position:
               
chr1:37646233-37646033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
86-308
               

               
Cow position:
               
chr1:77099772-77099564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 69
               

               
Conread position:
               
86-439
               

               
Cow position:
               
chr1:42138633-42138982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
86-442
               

               
Cow position:
               
chr1:96136253-96136595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
86-490
               

               
Cow position:
               
chr1:27145885-27145466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 10
               

               
Conread position:
               
86-492
               

               
Cow position:
               
chr1:11853922-11853506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
87-307
               

               
Cow position:
               
chr1:77462132-77462346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
87-383
               

               
Cow position:
               
chr1:102519435-102519728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
87-492
               

               
Cow position:
               
chr1:16767318-16766906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 130
               

               
Conread position:
               
87-492
               

               
Cow position:
               
chr1:23488746-23488323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 317
               

               
Conread position:
               
87-492
               

               
Cow position:
               
chr1:43389281-43388874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
88-202
               

               
Cow position:
               
chr1:26934773-26934656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-205
               

               
Cow position:
               
chr1:41138586-41138469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 8
               

               
Conread position:
               
88-212
               

               
Cow position:
               
chr1:9437781-9437658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
88-222
               

               
Cow position:
               
chr1:81579531-81579667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
88-232
               

               
Cow position:
               
chr1:57957090-57956945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-245
               

               
Cow position:
               
chr1:65637972-65638133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-247
               

               
Cow position:
               
chr1:99543281-99543123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
88-258
               

               
Cow position:
               
chr1:74013499-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
88-262
               

               
Cow position:
               
chr1:39702598-39702762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-263
               

               
Cow position:
               
chr1:55686451-55686275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
88-267
               

               
Cow position:
               
chr1:28068116-28068295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
88-275
               

               
Cow position:
               
chr1:4026952-4027146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 28
               

               
Conread position:
               
88-281
               

               
Cow position:
               
chr1:21092859-21093052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
88-281
               

               
Cow position:
               
chr1:71325479-71325288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
88-286
               

               
Cow position:
               
chr1:20799640-20799850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
88-286
               

               
Cow position:
               
chr1:97806560-97806753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
88-289
               

               
Cow position:
               
chr1:75967204-75967399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-290
               

               
Cow position:
               
chr1:43380261-43380058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
88-291
               

               
Cow position:
               
chr1:33701888-33702088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
48, 67
               

               
Conread position:
               
88-291
               

               
Cow position:
               
chr1:98708210-98708410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
88-292
               

               
Cow position:
               
chr1:36874783-36874984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
88-292
               

               
Cow position:
               
chr1:55163690-55163886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 79
               

               
Conread position:
               
88-292
               

               
Cow position:
               
chr1:71946602-71946404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
43, 8
               

               
Conread position:
               
88-293
               

               
Cow position:
               
chr1:41735857-41735652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 73
               

               
Conread position:
               
88-293
               

               
Cow position:
               
chr1:61724257-61724050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-294
               

               
Cow position:
               
chr1:3061826-3061614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
88-294
               

               
Cow position:
               
chr1:41004599-41004390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
88-295
               

               
Cow position:
               
chr1:26930206-26929998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
44, 9
               

               
Conread position:
               
88-295
               

               
Cow position:
               
chr1:31399458-31399250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 129
               

               
Conread position:
               
88-295
               

               
Cow position:
               
chr1:78783314-78783521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr1:5162285-5162073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr1:6939871-6939663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 70
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr1:15311636-15311844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr1:49131354-49131141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr1:56643821-56643615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
72, 58
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chr1:94403984-94404187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-297
               

               
Cow position:
               
chr1:31341286-31341073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chr1:666128-666343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chr1:39100823-39101039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chr1:45535470-45535684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chr1:51818709-51818919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chr1:58419700-58419915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chr1:80869874-80870094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
88-304
               

               
Cow position:
               
chr1:33811702-33811910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-305
               

               
Cow position:
               
chr1:2745115-2745333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 84
               

               
Conread position:
               
88-305
               

               
Cow position:
               
chr1:52354647-52354428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 197
               

               
Conread position:
               
88-306
               

               
Cow position:
               
chr1:61725345-61725129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 135
               

               
Conread position:
               
88-306
               

               
Cow position:
               
chr1:76470427-76470640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chr1:3244618-3244832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
47, 128
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chr1:12596133-12595919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chr1:56408381-56408602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chr1:73561882-73561665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chr1:96713046-96712825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-313
               

               
Cow position:
               
chr1:63905706-63905480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 103
               

               
Conread position:
               
88-318
               

               
Cow position:
               
chr1:24528830-24528614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
88-332
               

               
Cow position:
               
chr1:24655728-24655979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
88-333
               

               
Cow position:
               
chr1:99118153-99118394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 165
               

               
Conread position:
               
88-334
               

               
Cow position:
               
chr1:71818694-71818439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
46, 249
               

               
Conread position:
               
88-334
               

               
Cow position:
               
chr1:79663898-79663650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 132
               

               
Conread position:
               
88-337
               

               
Cow position:
               
chr1:3035225-3034973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 63
               

               
Conread position:
               
88-363
               

               
Cow position:
               
chr1:44155030-44155302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-370
               

               
Cow position:
               
chr1:97755292-97755579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
88-374
               

               
Cow position:
               
chr1:51968238-51968525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
30, 15
               

               
Conread position:
               
88-377
               

               
Cow position:
               
chr1:12871239-12870944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
43, 61
               

               
Conread position:
               
88-379
               

               
Cow position:
               
chr1:55135604-55135904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
88-381
               

               
Cow position:
               
chr1:21934404-21934103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
199, 50
               

               
Conread position:
               
88-381
               

               
Cow position:
               
chr1:51980995-51981292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 76
               

               
Conread position:
               
88-381
               

               
Cow position:
               
chr1:62732343-62732643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 91
               

               
Conread position:
               
88-381
               

               
Cow position:
               
chr1:79278674-79278377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
199, 43
               

               
Conread position:
               
88-381
               

               
Cow position:
               
chr1:95765321-95765022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
88-383
               

               
Cow position:
               
chr1:10071079-10070770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 216
               

               
Conread position:
               
88-387
               

               
Cow position:
               
chr1:55146569-55146874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
47, 114
               

               
Conread position:
               
88-391
               

               
Cow position:
               
chr1:4374570-4374257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
88-394
               

               
Cow position:
               
chr1:25183893-25184193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 185
               

               
Conread position:
               
88-394
               

               
Cow position:
               
chr1:36931927-36932237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-395
               

               
Cow position:
               
chr1:54732690-54732401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-405
               

               
Cow position:
               
chr1:51531541-51531843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
88-411
               

               
Cow position:
               
chr1:20204794-20205125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
88-414
               

               
Cow position:
               
chr1:20384853-20384522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 85
               

               
Conread position:
               
88-417
               

               
Cow position:
               
chr1:81563501-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 39
               

               
Conread position:
               
88-418
               

               
Cow position:
               
chr1:3456640-3456955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
88-419
               

               
Cow position:
               
chr1:45289105-45288765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
88-419
               

               
Cow position:
               
chr1:53423446-53423795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 288
               

               
Conread position:
               
88-428
               

               
Cow position:
               
chr1:95215418-95215075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 305
               

               
Conread position:
               
88-442
               

               
Cow position:
               
chr1:71253787-71253427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 98
               

               
Conread position:
               
88-445
               

               
Cow position:
               
chr1:67821442-67821091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
88-446
               

               
Cow position:
               
chr1:28176768-28177135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
88-448
               

               
Cow position:
               
chr1:94226780-94226418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-449
               

               
Cow position:
               
chr1:3137701-3138047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
88-449
               

               
Cow position:
               
chr1:37707201-37706841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
47, 207
               

               
Conread position:
               
88-449
               

               
Cow position:
               
chr1:81913384-81913017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
43, 197
               

               
Conread position:
               
88-450
               

               
Cow position:
               
chr1:84239339-84238986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
47, 91
               

               
Conread position:
               
88-450
               

               
Cow position:
               
chr1:84255522-84255902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 331
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chr1:21835716-21836071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chr1:33997144-33996788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
43, 127
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chr1:34300780-34300413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chr1:47233707-47233342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chr1:68253359-68253733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chr1:85162779-85162409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 8
               

               
Conread position:
               
88-452
               

               
Cow position:
               
chr1:74822219-74822587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 155
               

               
Conread position:
               
88-455
               

               
Cow position:
               
chr1:39069183-39068812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-475
               

               
Cow position:
               
chr1:51769853-51770258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
61, 51
               

               
Conread position:
               
88-479
               

               
Cow position:
               
chr1:24534475-24534094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-479
               

               
Cow position:
               
chr1:53374203-53374597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
50, 62
               

               
Conread position:
               
88-479
               

               
Cow position:
               
chr1:73960469-73960860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 303
               

               
Conread position:
               
88-479
               

               
Cow position:
               
chr1:97611885-97611497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
47, 87
               

               
Conread position:
               
88-479
               

               
Cow position:
               
chr1:100421611-100421988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
88-481
               

               
Cow position:
               
chr1:22826937-22827315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-482
               

               
Cow position:
               
chr1:25281908-25281496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chr1:1956561-1956161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
19, 64
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chr1:1981342-1980936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chr1:72304603-72304224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chr1:84282829-84283249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 321
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chr1:92197228-92197630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
46, 204
               

               
Conread position:
               
88-488
               

               
Cow position:
               
chr1:3924026-3923628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 62
               

               
Conread position:
               
88-488
               

               
Cow position:
               
chr1:14379762-14379374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 60
               

               
Conread position:
               
88-489
               

               
Cow position:
               
chr1:96964088-96964496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 61
               

               
Conread position:
               
88-490
               

               
Cow position:
               
chr1:2075560-2075172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
47, 69
               

               
Conread position:
               
88-490
               

               
Cow position:
               
chr1:12222837-12222426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
88-490
               

               
Cow position:
               
chr1:18937066-18936659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
88-490
               

               
Cow position:
               
chr1:46940094-46939699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 76
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:3323626-3324054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
47, 123
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:6103145-6102720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:7442753-7443162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:13548222-13547800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:21787094-21787504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
48, 320
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:22728815-22729235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 319
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:29627147-29626730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:31934281-31934684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:34856861-34856445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:42887495-42887100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:43505291-43505704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:44506736-44507148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:48105666-48105245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:55229752-55230153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:61005798-61005380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 198
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:64302466-64302070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:69539467-69539865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
204, 9
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:70828682-70829076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
164, 21
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:71119279-71119701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
53, 64
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:77720463-77720080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 10
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:81290286-81290684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:81569267-81568849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 193
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:91066380-91065977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
47, 15
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:93528458-93528874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 271
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:95100731-95101131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:99642602-99642189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
46, 100
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:100400433-100400024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
47, 8
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:100551738-100552146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:100761859-100762254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 62
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr1:102784728-102785126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
89-295
               

               
Cow position:
               
chr1:32341438-32341234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
49, 7
               

               
Conread position:
               
89-299
               

               
Cow position:
               
chr1:3340706-3340913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
89-460
               

               
Cow position:
               
chr1:93043794-93044162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 173
               

               
Conread position:
               
90-207
               

               
Cow position:
               
chr1:40292196-40292076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
90-290
               

               
Cow position:
               
chr1:11873587-11873393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 61
               

               
Conread position:
               
90-300
               

               
Cow position:
               
chr1:95327383-95327172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 157
               

               
Conread position:
               
90-324
               

               
Cow position:
               
chr1:82861544-82861786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
90-490
               

               
Cow position:
               
chr1:47658123-47658526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
90-492
               

               
Cow position:
               
chr1:31348140-31347754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
41, 61
               

               
Conread position:
               
90-492
               

               
Cow position:
               
chr1:45555130-45555545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
91-212
               

               
Cow position:
               
chr1:8659419-8659542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
91-266
               

               
Cow position:
               
chr1:92010086-92010263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
91-275
               

               
Cow position:
               
chr1:36613504-36613321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
91-292
               

               
Cow position:
               
chr1:3752171-3751968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
91-292
               

               
Cow position:
               
chr1:42360037-42360245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
91-293
               

               
Cow position:
               
chr1:90423315-90423112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 143
               

               
Conread position:
               
91-295
               

               
Cow position:
               
chr1:101634472-101634676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
44, 176
               

               
Conread position:
               
91-296
               

               
Cow position:
               
chr1:29671753-29671549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
44, 88
               

               
Conread position:
               
91-296
               

               
Cow position:
               
chr1:51836342-51836545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
120, 47
               

               
Conread position:
               
91-296
               

               
Cow position:
               
chr1:62919947-62920139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr1:14561177-14560964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 179
               

               
Conread position:
               
91-307
               

               
Cow position:
               
chr1:57698683-57698463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 148
               

               
Conread position:
               
91-317
               

               
Cow position:
               
chr1:71797129-71796921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
91-329
               

               
Cow position:
               
chr1:68282567-68282810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
91-337
               

               
Cow position:
               
chr1:53495234-53495480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
44, 190
               

               
Conread position:
               
91-361
               

               
Cow position:
               
chr1:99136659-99136380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
91-379
               

               
Cow position:
               
chr1:1991654-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
44, 152
               

               
Conread position:
               
91-383
               

               
Cow position:
               
chr1:89937589-89937296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
91-386
               

               
Cow position:
               
chr1:85596715-85597013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
91-386
               

               
Cow position:
               
chr1:102647498-102647198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
91-391
               

               
Cow position:
               
chr1:1165372-1165679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 194
               

               
Conread position:
               
91-391
               

               
Cow position:
               
chr1:89076865-89076553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
58, 109
               

               
Conread position:
               
91-391
               

               
Cow position:
               
chr1:92963170-92963475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
91-394
               

               
Cow position:
               
chr1:74947346-74947035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
197, 39
               

               
Conread position:
               
91-405
               

               
Cow position:
               
chr1:5023968-5023670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
91-417
               

               
Cow position:
               
chr1:56634869-56635202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 95
               

               
Conread position:
               
91-418
               

               
Cow position:
               
chr1:19482302-19481976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
91-418
               

               
Cow position:
               
chr1:89349748-89350070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
91-423
               

               
Cow position:
               
chr1:7350309-7350657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
44, 324
               

               
Conread position:
               
91-431
               

               
Cow position:
               
chr1:49795775-49796110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
40, 71
               

               
Conread position:
               
91-434
               

               
Cow position:
               
chr1:88618364-88618717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
91-444
               

               
Cow position:
               
chr1:83583167-83582804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
44, 132
               

               
Conread position:
               
91-444
               

               
Cow position:
               
chr1:92437219-92436860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 7
               

               
Conread position:
               
91-448
               

               
Cow position:
               
chr1:4290929-4291295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
91-448
               

               
Cow position:
               
chr1:49839278-49839617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
40, 60
               

               
Conread position:
               
91-450
               

               
Cow position:
               
chr1:81613156-81613523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 317
               

               
Conread position:
               
91-450
               

               
Cow position:
               
chr1:83982605-83982244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
23, 6
               

               
Conread position:
               
91-451
               

               
Cow position:
               
chr1:83747711-83748079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 12
               

               
Conread position:
               
91-451
               

               
Cow position:
               
chr1:98551484-98551855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 322
               

               
Conread position:
               
91-451
               

               
Cow position:
               
chr1:101822727-101822377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
44, 64
               

               
Conread position:
               
91-470
               

               
Cow position:
               
chr1:34685966-34686329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
44, 17
               

               
Conread position:
               
91-472
               

               
Cow position:
               
chr1:56229026-56229390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
91-479
               

               
Cow position:
               
chr1:78809655-78810050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
91-481
               

               
Cow position:
               
chr1:19516634-19516227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
41, 67
               

               
Conread position:
               
91-481
               

               
Cow position:
               
chr1:61742196-61741794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
91-485
               

               
Cow position:
               
chr1:1053360-1053755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 12
               

               
Conread position:
               
91-485
               

               
Cow position:
               
chr1:22628867-22628481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
44, 56
               

               
Conread position:
               
91-485
               

               
Cow position:
               
chr1:53458477-53458871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
91-485
               

               
Cow position:
               
chr1:68619165-68618762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 28
               

               
Conread position:
               
91-485
               

               
Cow position:
               
chr1:75744631-75745036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
91-488
               

               
Cow position:
               
chr1:54478095-54478492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
91-488
               

               
Cow position:
               
chr1:97820457-97820859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chr1:53397758-53398151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 162
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chr1:54207045-54206641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chr1:79165320-79164904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 284
               

               
Conread position:
               
91-491
               

               
Cow position:
               
chr1:81515010-81515418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
44, 159
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:4691364-4691768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
60, 6
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:54258338-54258749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:55705483-55705067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 282
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:61564563-61564961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
41, 292
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:61884686-61885092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 304
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:64804337-64803917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 174
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:70227930-70227511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:70434764-70435166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
47, 79
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:84812166-84811761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 135
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:86113642-86113216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
40, 82
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr1:89381049-89381454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 53
               

               
Conread position:
               
92-227
               

               
Cow position:
               
chr1:53650661-53650800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
92-232
               

               
Cow position:
               
chr1:54484839-54484980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 109
               

               
Conread position:
               
92-241
               

               
Cow position:
               
chr1:62996266-62996414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
92-241
               

               
Cow position:
               
chr1:95071757-95071904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
92-249
               

               
Cow position:
               
chr1:40062220-40062380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
92-258
               

               
Cow position:
               
chr1:32631238-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
92-258
               

               
Cow position:
               
chr1:33716993-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
92-264
               

               
Cow position:
               
chr1:30504242-30504414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
92-275
               

               
Cow position:
               
chr1:44136690-44136512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
92-281
               

               
Cow position:
               
chr1:86484728-86484925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
92-286
               

               
Cow position:
               
chr1:89395364-89395566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
92-292
               

               
Cow position:
               
chr1:22467702-22467903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
92-292
               

               
Cow position:
               
chr1:39418347-39418150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
92-292
               

               
Cow position:
               
chr1:71045526-71045725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chr1:34000677-34000883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 200
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chr1:43358243-43358041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chr1:99095135-99095334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
92-295
               

               
Cow position:
               
chr1:50634634-50634427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chr1:3661284-3661092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chr1:19998264-19998066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chr1:47008802-47009005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chr1:84240671-84240867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chr1:100512367-100512573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-297
               

               
Cow position:
               
chr1:52329757-52329553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-298
               

               
Cow position:
               
chr1:21954446-21954255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-299
               

               
Cow position:
               
chr1:5409841-5409636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 5
               

               
Conread position:
               
92-299
               

               
Cow position:
               
chr1:5873200-5872994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
92-299
               

               
Cow position:
               
chr1:56748361-56748573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
92-299
               

               
Cow position:
               
chr1:98562931-98563139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
92-305
               

               
Cow position:
               
chr1:26159660-26159444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
92-306
               

               
Cow position:
               
chr1:84116173-84116381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
92-307
               

               
Cow position:
               
chr1:50679514-50679297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
92-308
               

               
Cow position:
               
chr1:57264215-57264009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-308
               

               
Cow position:
               
chr1:101547271-101547047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
6, 12
               

               
Conread position:
               
92-313
               

               
Cow position:
               
chr1:4573292-4573514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
92-313
               

               
Cow position:
               
chr1:20002464-20002247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
92-323
               

               
Cow position:
               
chr1:84786542-84786776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 185
               

               
Conread position:
               
92-326
               

               
Cow position:
               
chr1:57900969-57900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 149
               

               
Conread position:
               
92-328
               

               
Cow position:
               
chr1:81277430-81277194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
92-330
               

               
Cow position:
               
chr1:98380805-98380560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 97
               

               
Conread position:
               
92-337
               

               
Cow position:
               
chr1:11770522-11770266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr1:82504738-82505021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 263
               

               
Conread position:
               
92-373
               

               
Cow position:
               
chr1:55260659-55260373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
92-373
               

               
Cow position:
               
chr1:60907133-60907439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
92-381
               

               
Cow position:
               
chr1:90864528-90864223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
92-382
               

               
Cow position:
               
chr1:101551229-101551534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
44, 194
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chr1:11772309-11772013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 176
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chr1:13614947-13614661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
57, 166
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chr1:60707175-60707475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
43, 78
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chr1:71748235-71747948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chr1:94212005-94212299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chr1:96478467-96478772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
92-385
               

               
Cow position:
               
chr1:4027633-4027937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
39, 169
               

               
Conread position:
               
92-385
               

               
Cow position:
               
chr1:57305604-57305893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-395
               

               
Cow position:
               
chr1:68951402-68951709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
6, 60
               

               
Conread position:
               
92-396
               

               
Cow position:
               
chr1:42555041-42555351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
92-405
               

               
Cow position:
               
chr1:69540054-69540374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
43, 184
               

               
Conread position:
               
92-418
               

               
Cow position:
               
chr1:85774231-85774562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
45, 97
               

               
Conread position:
               
92-418
               

               
Cow position:
               
chr1:88652402-88652741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
92-418
               

               
Cow position:
               
chr1:96947922-96947616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
92-423
               

               
Cow position:
               
chr1:81355932-81355593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
92-428
               

               
Cow position:
               
chr1:72286278-72285953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-429
               

               
Cow position:
               
chr1:80899879-80900235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 72
               

               
Conread position:
               
92-431
               

               
Cow position:
               
chr1:98594342-98594683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-434
               

               
Cow position:
               
chr1:70380374-70380024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
92-442
               

               
Cow position:
               
chr1:100800128-100800480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
92-443
               

               
Cow position:
               
chr1:69264593-69264938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-448
               

               
Cow position:
               
chr1:52753394-52753023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-450
               

               
Cow position:
               
chr1:39427210-39426872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-450
               

               
Cow position:
               
chr1:52994795-52995165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
45, 130
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chr1:1185511-1185865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
38, 58
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chr1:42968546-42968183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 145
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chr1:63596288-63595918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
44, 118
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chr1:70297043-70297414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
39, 146
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chr1:89742240-89741857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
42, 322
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chr1:91817002-91816635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
43, 143
               

               
Conread position:
               
92-452
               

               
Cow position:
               
chr1:23969265-23968920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 55
               

               
Conread position:
               
92-453
               

               
Cow position:
               
chr1:61175955-61176317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
92-470
               

               
Cow position:
               
chr1:11914106-11913716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-470
               

               
Cow position:
               
chr1:52039408-52039791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr1:634963-635364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr1:10778345-10778725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr1:22730533-22730900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr1:51445651-51446050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr1:53520678-53521081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr1:68827134-68826754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chr1:69695237-69694831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
39, 270
               

               
Conread position:
               
92-481
               

               
Cow position:
               
chr1:10632825-10633210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
92-482
               

               
Cow position:
               
chr1:68217588-68217193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
6, 60
               

               
Conread position:
               
92-485
               

               
Cow position:
               
chr1:19145147-19144762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
92-485
               

               
Cow position:
               
chr1:31348669-31348262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
92-485
               

               
Cow position:
               
chr1:42256737-42256330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 5
               

               
Conread position:
               
92-485
               

               
Cow position:
               
chr1:72035157-72034753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
92-488
               

               
Cow position:
               
chr1:10942320-10941922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
92-488
               

               
Cow position:
               
chr1:10964066-10964464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
92-488
               

               
Cow position:
               
chr1:24133284-24132887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
92-490
               

               
Cow position:
               
chr1:23634129-23633749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-490
               

               
Cow position:
               
chr1:34159603-34160006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 90
               

               
Conread position:
               
92-490
               

               
Cow position:
               
chr1:72012032-72011644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
52, 59
               

               
Conread position:
               
92-490
               

               
Cow position:
               
chr1:78857551-78857148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 148
               

               
Conread position:
               
92-491
               

               
Cow position:
               
chr1:78810807-78811217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 173
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:10655249-10655657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 284
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:15547240-15547645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:21508159-21508576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:25383434-25383849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 65
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:29935610-29935211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 124
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:33719885-33720284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 179
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:35162175-35162585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 311
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:37322233-37321830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 280
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:41056456-41056860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 34
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:43839299-43839691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:52435042-52435455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
39, 61
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:61392020-61391615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
57, 256
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:73584630-73584225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:77620322-77620729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:79590872-79591284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 322
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:79844240-79844659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:82338012-82337601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
43, 35
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:89510161-89509748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 143
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr1:92370589-92370188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
93-244
               

               
Cow position:
               
chr1:4619095-4618940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 5
               

               
Conread position:
               
93-264
               

               
Cow position:
               
chr1:69445144-69445307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
56, 95
               

               
Conread position:
               
93-292
               

               
Cow position:
               
chr1:95050327-95050123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
93-295
               

               
Cow position:
               
chr1:52564018-52563835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
93-299
               

               
Cow position:
               
chr1:4293835-4294033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
93-299
               

               
Cow position:
               
chr1:44125866-44125669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 5
               

               
Conread position:
               
93-307
               

               
Cow position:
               
chr1:26200993-26201206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
37, 58
               

               
Conread position:
               
93-334
               

               
Cow position:
               
chr1:53540163-53540414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
42, 196
               

               
Conread position:
               
93-394
               

               
Cow position:
               
chr1:71135925-71136235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
205, 46
               

               
Conread position:
               
93-414
               

               
Cow position:
               
chr1:31414186-31413868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
93-418
               

               
Cow position:
               
chr1:81868954-81868624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 59
               

               
Conread position:
               
93-431
               

               
Cow position:
               
chr1:85028733-85029072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
34, 16
               

               
Conread position:
               
93-431
               

               
Cow position:
               
chr1:100705905-100706244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 64
               

               
Conread position:
               
93-465
               

               
Cow position:
               
chr1:83082775-83083151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
38, 19
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chr1:6941238-6941646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chr1:6958651-6959059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chr1:48444410-48444011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
42, 63
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chr1:51628729-51628328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
38, 148
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chr1:70538376-70538786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 321
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chr1:82936809-82936424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
94-292
               

               
Cow position:
               
chr1:43872557-43872360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
94-305
               

               
Cow position:
               
chr1:71952861-71953060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
96-295
               

               
Cow position:
               
chr1:76222915-76222716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
96-297
               

               
Cow position:
               
chr1:67008962-67008768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 31
               

               
Conread position:
               
96-300
               

               
Cow position:
               
chr1:78689709-78689917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
39, 183
               

               
Conread position:
               
96-307
               

               
Cow position:
               
chr1:95035580-95035370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 83
               

               
Conread position:
               
96-308
               

               
Cow position:
               
chr1:90640800-90641019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
96-418
               

               
Cow position:
               
chr1:42874171-42873845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
96-425
               

               
Cow position:
               
chr1:3720651-3720333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
37, 55
               

               
Conread position:
               
96-431
               

               
Cow position:
               
chr1:95176711-95177055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
39, 160
               

               
Conread position:
               
96-431
               

               
Cow position:
               
chr1:96472205-96472548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 271
               

               
Conread position:
               
96-450
               

               
Cow position:
               
chr1:80988122-80988481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
96-451
               

               
Cow position:
               
chr1:63390998-63390631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
96-451
               

               
Cow position:
               
chr1:85361631-85361987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
39, 162
               

               
Conread position:
               
96-451
               

               
Cow position:
               
chr1:90868660-90868309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
36, 56
               

               
Conread position:
               
96-452
               

               
Cow position:
               
chr1:4032410-4032773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
31, 55
               

               
Conread position:
               
96-461
               

               
Cow position:
               
chr1:89342217-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
96-463
               

               
Cow position:
               
chr1:57637148-57637511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
96-479
               

               
Cow position:
               
chr1:95056831-95057210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
96-490
               

               
Cow position:
               
chr1:68854950-68855344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
96-491
               

               
Cow position:
               
chr1:62964055-62964447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
96-492
               

               
Cow position:
               
chr1:8398-8798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
35, 55
               

               
Conread position:
               
96-492
               

               
Cow position:
               
chr1:64678473-64678860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
39, 145
               

               
Conread position:
               
96-492
               

               
Cow position:
               
chr1:95499720-95499316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 111
               

               
Conread position:
               
97-228
               

               
Cow position:
               
chr1:56618903-56618769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
5, 66
               

               
Conread position:
               
97-323
               

               
Cow position:
               
chr1:342368-342138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
38, 85
               

               
Conread position:
               
97-451
               

               
Cow position:
               
chr1:7186564-7186924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
38, 204
               

               
Conread position:
               
97-467
               

               
Cow position:
               
chr1:60032821-60032444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
97-479
               

               
Cow position:
               
chr1:70422077-70422474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
38, 228
               

               
Conread position:
               
98-257
               

               
Cow position:
               
chr1:43893703-43893861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
98-292
               

               
Cow position:
               
chr1:54199605-54199411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
38, 15
               

               
Conread position:
               
98-296
               

               
Cow position:
               
chr1:99614225-99614422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
34, 143
               

               
Conread position:
               
98-298
               

               
Cow position:
               
chr1:64251274-64251077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 79
               

               
Conread position:
               
98-300
               

               
Cow position:
               
chr1:56657816-56658011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
98-373
               

               
Cow position:
               
chr1:24235743-24235457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
98-427
               

               
Cow position:
               
chr1:88338473-88338779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
38, 119
               

               
Conread position:
               
98-428
               

               
Cow position:
               
chr1:37309733-37309404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
98-451
               

               
Cow position:
               
chr1:85867372-85867725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
98-477
               

               
Cow position:
               
chr1:52488183-52487813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
37, 19
               

               
Conread position:
               
98-490
               

               
Cow position:
               
chr1:40599826-40600203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr1:31765619-31765190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
33, 322
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr1:36997970-36998362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr1:68845708-68845326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr1:71079180-71078782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr1:82884611-82884196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chr1:93499400-93499799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
99-292
               

               
Cow position:
               
chr1:26702429-26702236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
36, 51
               

               
Conread position:
               
99-492
               

               
Cow position:
               
chr1:11728956-11729351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 304
               

               
Conread position:
               
100-420
               

               
Cow position:
               
chr1:16962234-16961903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
34, 301
               

               
Conread position:
               
103-292
               

               
Cow position:
               
chr1:15333663-15333855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
103-292
               

               
Cow position:
               
chr1:52956042-52956224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
103-298
               

               
Cow position:
               
chr1:45673494-45673686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
46, 71
               

               
Conread position:
               
103-319
               

               
Cow position:
               
chr1:22448804-22448591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
103-387
               

               
Cow position:
               
chr1:26943094-26943384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
103-418
               

               
Cow position:
               
chr1:97954666-97954363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
29, 44
               

               
Conread position:
               
103-431
               

               
Cow position:
               
chr1:14981336-14981007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
103-432
               

               
Cow position:
               
chr1:5135909-5135590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 46
               

               
Conread position:
               
103-450
               

               
Cow position:
               
chr1:7971213-7971547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
103-451
               

               
Cow position:
               
chr1:53671967-53671614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
32, 121
               

               
Conread position:
               
103-484
               

               
Cow position:
               
chr1:6305086-6304705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
32, 300
               

               
Conread position:
               
103-485
               

               
Cow position:
               
chr1:49433482-49433088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 86
               

               
Conread position:
               
103-485
               

               
Cow position:
               
chr1:71295533-71295126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 320
               

               
Conread position:
               
103-491
               

               
Cow position:
               
chr1:26179032-26178629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
32, 117
               

               
Conread position:
               
103-492
               

               
Cow position:
               
chr1:8287831-8287450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
32, 45
               

               
Conread position:
               
104-451
               

               
Cow position:
               
chr1:34771720-34771365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 47
               

               
Conread position:
               
104-491
               

               
Cow position:
               
chr1:21577588-21577987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
104-492
               

               
Cow position:
               
chr1:100741076-100741462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
28, 14
               

               
Conread position:
               
105-313
               

               
Cow position:
               
chr1:68995956-68996174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
105-480
               

               
Cow position:
               
chr1:84910849-84910473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
28, 81
               

               
Conread position:
               
105-481
               

               
Cow position:
               
chr1:98030699-98031086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
105-485
               

               
Cow position:
               
chr1:52496566-52496946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
30, 50
               

               
Conread position:
               
105-492
               

               
Cow position:
               
chr1:74084407-74084008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
114, 45
               

               
Conread position:
               
105-492
               

               
Cow position:
               
chr1:78091821-78092220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
106-231
               

               
Cow position:
               
chr1:58439263-58439140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
29, 40
               

               
Conread position:
               
106-337
               

               
Cow position:
               
chr1:1403687-1403455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
7, 45
               

               
Conread position:
               
106-354
               

               
Cow position:
               
chr1:95017730-95017486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 45
               

               
Conread position:
               
106-405
               

               
Cow position:
               
chr1:19885170-19885473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
29, 111
               

               
Conread position:
               
107-383
               

               
Cow position:
               
chr1:98310847-98311144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 280
               

               
Conread position:
               
108-448
               

               
Cow position:
               
chr1:97778783-97779126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
27, 18
               

               
Conread position:
               
110-246
               

               
Cow position:
               
chr1:99792601-99792740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
110-343
               

               
Cow position:
               
chr1:61385665-61385903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
110-492
               

               
Cow position:
               
chr1:41289973-41289599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
40, 169
               

               
Conread position:
               
111-279
               

               
Cow position:
               
chr1:57946096-57945924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
111-381
               

               
Cow position:
               
chr1:95654925-95654643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 138
               

               
Conread position:
               
111-383
               

               
Cow position:
               
chr1:80363406-80363124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
111-418
               

               
Cow position:
               
chr1:62291895-62291596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 44
               

               
Conread position:
               
111-450
               

               
Cow position:
               
chr1:71643873-71643523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 290
               

               
Conread position:
               
111-479
               

               
Cow position:
               
chr1:679821-679438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 177
               

               
Conread position:
               
112-418
               

               
Cow position:
               
chr1:100393373-100393058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
23, 296
               

               
Conread position:
               
112-467
               

               
Cow position:
               
chr1:16855899-16855546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
23, 37
               

               
Conread position:
               
112-492
               

               
Cow position:
               
chr1:197216-196826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 137
               

               
Conread position:
               
112-492
               

               
Cow position:
               
chr1:21955582-21955192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 42
               

               
Conread position:
               
113-454
               

               
Cow position:
               
chr1:62036593-62036942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
113-492
               

               
Cow position:
               
chr1:12464871-12464485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 38
               

               
Conread position:
               
114-418
               

               
Cow position:
               
chr1:66430090-66430396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 115
               

               
Conread position:
               
115-314
               

               
Cow position:
               
chr1:6867686-6867488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 139
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr1:4414413-4414104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
115-418
               

               
Cow position:
               
chr1:75141801-75142102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
20, 36
               

               
Conread position:
               
117-492
               

               
Cow position:
               
chr1:63435013-63434618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
18, 93
               

               
Conread position:
               
117-492
               

               
Cow position:
               
chr1:72103643-72104034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
18, 34
               

               
Conread position:
               
119-273
               

               
Cow position:
               
chr1:89438137-89437985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
16, 31
               

               
Conread position:
               
119-288
               

               
Cow position:
               
chr1:43340824-43340645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
119-492
               

               
Cow position:
               
chr1:5597400-5597032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 46
               

               
Conread position:
               
120-443
               

               
Cow position:
               
chr1:94261347-94261663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 29
               

               
Conread position:
               
121-314
               

               
Cow position:
               
chr1:24542781-24542589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
13, 46
               

               
Conread position:
               
121-492
               

               
Cow position:
               
chr1:84906267-84905880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
122-297
               

               
Cow position:
               
chr1:51654212-51654387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
123-307
               

               
Cow position:
               
chr1:24413242-24413431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
127-338
               

               
Cow position:
               
chr1:57760164-57760380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
127-388
               

               
Cow position:
               
chr1:89497772-89498030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
5, 24
               

               
Conread position:
               
128-418
               

               
Cow position:
               
chr1:39510242-39509953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 22
               

               
Conread position:
               
128-492
               

               
Cow position:
               
chr1:57880984-57880601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 330
               

               
Conread position:
               
130-267
               

               
Cow position:
               
chr1:56413709-56413569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
130-295
               

               
Cow position:
               
chr1:82443646-82443481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
80, 20
               

               
Conread position:
               
130-295
               

               
Cow position:
               
chr1:102113298-102113131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
130-335
               

               
Cow position:
               
chr1:83593997-83593784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
19, 29
               

               
Conread position:
               
130-383
               

               
Cow position:
               
chr1:92607109-92606853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
19, 154
               

               
Conread position:
               
130-460
               

               
Cow position:
               
chr1:33331278-33330946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
19, 97
               

               
Conread position:
               
130-485
               

               
Cow position:
               
chr1:70343850-70344220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
82, 268
               

               
Conread position:
               
130-488
               

               
Cow position:
               
chr1:13810459-13810827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
130-490
               

               
Cow position:
               
chr1:92369539-92369929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
130-491
               

               
Cow position:
               
chr1:73546096-73545729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
19, 122
               

               
Conread position:
               
131-492
               

               
Cow position:
               
chr1:42398385-42398016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
85, 19
               

               
Conread position:
               
131-492
               

               
Cow position:
               
chr1:83072255-83072622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 19
               

               
Conread position:
               
132-299
               

               
Cow position:
               
chr1:89082920-89083088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
133-295
               

               
Cow position:
               
chr1:69378936-69378773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
98, 17
               

               
Conread position:
               
133-492
               

               
Cow position:
               
chr1:54156927-54156554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
134-492
               

               
Cow position:
               
chr1:76037691-76037332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
135-313
               

               
Cow position:
               
chr1:3243754-3243930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 19
               

               
Conread position:
               
135-387
               

               
Cow position:
               
chr1:6788472-6788207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
135-451
               

               
Cow position:
               
chr1:68763866-68763551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
173, 15
               

               
Conread position:
               
141-492
               

               
Cow position:
               
chr1:89388155-89388523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
57, 275
               

               
Conread position:
               
150-383
               

               
Cow position:
               
chr1:8144336-8144101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
150-448
               

               
Cow position:
               
chr1:91875078-91874784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
146, 26
               

               
Conread position:
               
150-492
               

               
Cow position:
               
chr1:11832935-11832595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
274, 103
               

               
Conread position:
               
152-294
               

               
Cow position:
               
chr1:31960054-31960198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
154-354
               

               
Cow position:
               
chr1:50907559-50907375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
154-377
               

               
Cow position:
               
chr1:89508389-89508617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
155-383
               

               
Cow position:
               
chr1:29481793-29481559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
26, 5
               

               
Conread position:
               
156-492
               

               
Cow position:
               
chr1:24778149-24777804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
130, 12
               

               
Conread position:
               
157-292
               

               
Cow position:
               
chr1:20544131-20544265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
157-307
               

               
Cow position:
               
chr1:75347456-75347607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
157-354
               

               
Cow position:
               
chr1:99039517-99039312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
131, 94
               

               
Conread position:
               
157-359
               

               
Cow position:
               
chr1:70028418-70028628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
157-371
               

               
Cow position:
               
chr1:427083-426870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
157-410
               

               
Cow position:
               
chr1:87211781-87212029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
157-423
               

               
Cow position:
               
chr1:27380310-27380566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
157-426
               

               
Cow position:
               
chr1:12978516-12978795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
134, 252
               

               
Conread position:
               
157-434
               

               
Cow position:
               
chr1:75933108-75933387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
128, 195
               

               
Conread position:
               
157-441
               

               
Cow position:
               
chr1:24581419-24581702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
126, 81
               

               
Conread position:
               
157-443
               

               
Cow position:
               
chr1:101632503-101632208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
136, 251
               

               
Conread position:
               
157-451
               

               
Cow position:
               
chr1:101836881-101837180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 261
               

               
Conread position:
               
157-481
               

               
Cow position:
               
chr1:86110896-86110573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 208
               

               
Conread position:
               
157-485
               

               
Cow position:
               
chr1:7748053-7748391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
157-485
               

               
Cow position:
               
chr1:7752219-7752555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
60, 275
               

               
Conread position:
               
157-485
               

               
Cow position:
               
chr1:20667906-20667575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
129, 242
               

               
Conread position:
               
157-485
               

               
Cow position:
               
chr1:96277219-96276880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
92, 213
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chr1:19568688-19569035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 50
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chr1:33207035-33206694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
139, 109
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chr1:83659437-83659095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 7
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chr1:101280880-101280557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
272, 108
               

               
Conread position:
               
158-386
               

               
Cow position:
               
chr1:77683194-77683427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
158-451
               

               
Cow position:
               
chr1:93554680-93554972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
59, 241
               

               
Conread position:
               
158-492
               

               
Cow position:
               
chr1:90621674-90621326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 119
               

               
Conread position:
               
159-372
               

               
Cow position:
               
chr1:24445789-24445567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 41
               

               
Conread position:
               
159-418
               

               
Cow position:
               
chr1:85647944-85647677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
139, 250
               

               
Conread position:
               
160-396
               

               
Cow position:
               
chr1:70026505-70026260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
160-418
               

               
Cow position:
               
chr1:38401631-38401904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 208
               

               
Conread position:
               
161-386
               

               
Cow position:
               
chr1:97938809-97939032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
161-492
               

               
Cow position:
               
chr1:78096776-78097106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
82, 70
               

               
Conread position:
               
161-492
               

               
Cow position:
               
chr1:80311310-80311637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
254, 94
               

               
Conread position:
               
161-492
               

               
Cow position:
               
chr1:97090166-97090498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
17, 79
               

               
Conread position:
               
162-395
               

               
Cow position:
               
chr1:101946866-101946630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
128, 27
               

               
Conread position:
               
162-431
               

               
Cow position:
               
chr1:18780495-18780211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
162-446
               

               
Cow position:
               
chr1:90976246-90975956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
55, 243
               

               
Conread position:
               
162-492
               

               
Cow position:
               
chr1:42175565-42175908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 158
               

               
Conread position:
               
162-492
               

               
Cow position:
               
chr1:63530417-63530739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 20
               

               
Conread position:
               
162-492
               

               
Cow position:
               
chr1:88913158-88913500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 219
               

               
Conread position:
               
165-451
               

               
Cow position:
               
chr1:65909370-65909648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
52, 134
               

               
Conread position:
               
166-383
               

               
Cow position:
               
chr1:102289256-102289036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
166-492
               

               
Cow position:
               
chr1:12424858-12425179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 48
               

               
Conread position:
               
166-492
               

               
Cow position:
               
chr1:33409783-33409443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
50, 234
               

               
Conread position:
               
167-492
               

               
Cow position:
               
chr1:17196783-17196445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
131, 33
               

               
Conread position:
               
168-405
               

               
Cow position:
               
chr1:43703254-43703501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
120, 240
               

               
Conread position:
               
168-416
               

               
Cow position:
               
chr1:41115868-41115616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
118, 194
               

               
Conread position:
               
168-489
               

               
Cow position:
               
chr1:87197674-87197997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 232
               

               
Conread position:
               
168-490
               

               
Cow position:
               
chr1:86682716-86682389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 233
               

               
Conread position:
               
170-450
               

               
Cow position:
               
chr1:96038941-96038666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
46, 17
               

               
Conread position:
               
170-492
               

               
Cow position:
               
chr1:20950571-20950897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
115, 5
               

               
Conread position:
               
171-490
               

               
Cow position:
               
chr1:23999066-23998745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
176-485
               

               
Cow position:
               
chr1:91023613-91023293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 232
               

               
Conread position:
               
177-451
               

               
Cow position:
               
chr1:68845302-68845032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
13, 111
               

               
Conread position:
               
177-492
               

               
Cow position:
               
chr1:8129111-8128799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
121, 59
               

               
Conread position:
               
178-387
               

               
Cow position:
               
chr1:87440325-87440543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 77
               

               
Conread position:
               
178-492
               

               
Cow position:
               
chr1:65318432-65318757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
33, 70
               

               
Conread position:
               
180-467
               

               
Cow position:
               
chr1:86073453-86073748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
32, 98
               

               
Conread position:
               
180-492
               

               
Cow position:
               
chr1:90595696-90595397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
30, 120
               

               
Conread position:
               
182-420
               

               
Cow position:
               
chr1:89230367-89230124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
182-492
               

               
Cow position:
               
chr1:10881209-10880899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 52
               

               
Conread position:
               
183-434
               

               
Cow position:
               
chr1:24407025-24406776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 27
               

               
Conread position:
               
183-450
               

               
Cow position:
               
chr1:85550216-85549943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
105, 223
               

               
Conread position:
               
183-455
               

               
Cow position:
               
chr1:9092218-9091952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
33, 51
               

               
Conread position:
               
183-480
               

               
Cow position:
               
chr1:50964265-50963959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 7
               

               
Conread position:
               
183-492
               

               
Cow position:
               
chr1:39225063-39224759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
183-492
               

               
Cow position:
               
chr1:89448759-89449078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 229
               

               
Conread position:
               
184-492
               

               
Cow position:
               
chr1:56618788-56618476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 203
               

               
Conread position:
               
184-492
               

               
Cow position:
               
chr1:64572376-64572694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
102, 225
               

               
Conread position:
               
188-488
               

               
Cow position:
               
chr1:78838665-78838963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
98, 70
               

               
Conread position:
               
190-491
               

               
Cow position:
               
chr1:79640421-79640110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
190-492
               

               
Cow position:
               
chr1:26934392-26934088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
125, 47
               

               
Conread position:
               
196-383
               

               
Cow position:
               
chr1:91370134-91369937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
93, 141
               

               
Conread position:
               
196-492
               

               
Cow position:
               
chr1:84104177-84103878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 7
               

               
Conread position:
               
197-490
               

               
Cow position:
               
chr1:20104144-20104444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 207
               

               
Conread position:
               
203-492
               

               
Cow position:
               
chr1:65028411-65028701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
32, 209
               

               
Conread position:
               
204-488
               

               
Cow position:
               
chr1:261596-261288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
59, 162
               

               
Conread position:
               
205-490
               

               
Cow position:
               
chr1:58754911-58754620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
207-447
               

               
Cow position:
               
chr1:98511813-98512060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
19, 200
               

               
Conread position:
               
209-473
               

               
Cow position:
               
chr1:7023008-7023280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
87, 57
               

               
Conread position:
               
209-490
               

               
Cow position:
               
chr1:41138244-41137970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
209-492
               

               
Cow position:
               
chr1:78794337-78794056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
85, 183
               

               
Conread position:
               
211-447
               

               
Cow position:
               
chr1:67688691-67688451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
13, 166
               

               
Conread position:
               
211-479
               

               
Cow position:
               
chr1:67114790-67115055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
63, 181
               

               
Conread position:
               
212-451
               

               
Cow position:
               
chr1:37886919-37886672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
78, 138
               

               
Conread position:
               
219-421
               

               
Cow position:
               
chr1:19227157-19226949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 172
               

               
Conread position:
               
221-485
               

               
Cow position:
               
chr1:77232668-77232394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
225-428
               

               
Cow position:
               
chr1:48769706-48769917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 181
               

               
Conread position:
               
225-492
               

               
Cow position:
               
chr1:82513452-82513172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 184
               

               
Conread position:
               
228-492
               

               
Cow position:
               
chr1:90904847-90904577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
62, 177
               

               
Conread position:
               
231-450
               

               
Cow position:
               
chr1:50991844-50992067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
232-492
               

               
Cow position:
               
chr1:96558924-96558666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
84, 58
               

               
Conread position:
               
240-455
               

               
Cow position:
               
chr1:80841571-80841790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
49, 161
               

               
Conread position:
               
243-492
               

               
Cow position:
               
chr1:98583679-98583928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 160
               

               
Conread position:
               
244-492
               

               
Cow position:
               
chr1:52618763-52619010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
217, 43
               

               
Conread position:
               
245-481
               

               
Cow position:
               
chr1:53452466-53452691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 147
               

               
Conread position:
               
246-491
               

               
Cow position:
               
chr1:35671466-35671715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
17, 121
               

               
Conread position:
               
251-485
               

               
Cow position:
               
chr1:92032672-92032424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 197
               

               
Conread position:
               
254-492
               

               
Cow position:
               
chr1:46143530-46143287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
42, 115
               

               
Conread position:
               
255-491
               

               
Cow position:
               
chr1:31855302-31855050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
178, 21
               

               
Conread position:
               
256-492
               

               
Cow position:
               
chr1:3942274-3942037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
256-492
               

               
Cow position:
               
chr1:54267999-54267760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
34, 26
               

               
Conread position:
               
257-475
               

               
Cow position:
               
chr1:3965775-3965999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
35, 106
               

               
Conread position:
               
259-485
               

               
Cow position:
               
chr1:100852656-100852880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
33, 141
               

               
Conread position:
               
260-474
               

               
Cow position:
               
chr1:80584369-80584590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
33, 139
               

               
Conread position:
               
260-490
               

               
Cow position:
               
chr1:48618301-48618069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 143
               

               
Conread position:
               
268-492
               

               
Cow position:
               
chr1:62034872-62034655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
8, 109
               

               
Conread position:
               
270-470
               

               
Cow position:
               
chr1:19962012-19962207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
28, 6
               

               
Conread position:
               
281-492
               

               
Cow position:
               
chr1:55753245-55753039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
285-492
               

               
Cow position:
               
chr1:83025191-83024985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
5, 103
               

               
Conread position:
               
286-422
               

               
Cow position:
               
chr1:82556434-82556303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
286-492
               

               
Cow position:
               
chr1:79003951-79004156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
142, 79
               

               
Conread position:
               
287-418
               

               
Cow position:
               
chr1:4581354-4581225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
287-451
               

               
Cow position:
               
chr1:808845-808680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
287-485
               

               
Cow position:
               
chr1:89158724-89158532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
287-490
               

               
Cow position:
               
chr1:41027051-41027250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
287-490
               

               
Cow position:
               
chr1:81481406-81481207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
287-492
               

               
Cow position:
               
chr1:73721336-73721544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
119, 101
               

               
Conread position:
               
287-492
               

               
Cow position:
               
chr1:92523990-92524197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
152, 143
               

               
Conread position:
               
287-492
               

               
Cow position:
               
chr1:96304993-96304792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
288-490
               

               
Cow position:
               
chr1:98911985-98912186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 68
               

               
Conread position:
               
288-492
               

               
Cow position:
               
chr1:78066559-78066363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
288-492
               

               
Cow position:
               
chr1:102529880-102529673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
140, 77
               

               
Conread position:
               
290-485
               

               
Cow position:
               
chr1:93590607-93590414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
290-492
               

               
Cow position:
               
chr1:64113812-64113620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
291-492
               

               
Cow position:
               
chr1:24530482-24530678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
297-490
               

               
Cow position:
               
chr1:45315650-45315453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
132, 99
               

               
Conread position:
               
297-492
               

               
Cow position:
               
chr1:759432-759232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
132, 99
               

               
Conread position:
               
303-490
               

               
Cow position:
               
chr1:68688575-68688757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
149, 94
               

               
Conread position:
               
303-490
               

               
Cow position:
               
chr1:79146825-79146636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 66
               

               
Conread position:
               
304-488
               

               
Cow position:
               
chr1:61011174-61011351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
304-492
               

               
Cow position:
               
chr1:66752636-66752452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
306-485
               

               
Cow position:
               
chr1:99605192-99605016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
120, 77
               

               
Conread position:
               
315-492
               

               
Cow position:
               
chr1:42774915-42775086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
123, 16
               

               
Conread position:
               
316-492
               

               
Cow position:
               
chr1:71636320-71636148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 83
               

               
Conread position:
               
320-490
               

               
Cow position:
               
chr1:55685969-55685800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
127, 79
               

               
Conread position:
               
320-490
               

               
Cow position:
               
chr1:71946075-71945902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 64
               

               
Conread position:
               
320-492
               

               
Cow position:
               
chr1:524817-524986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
320-492
               

               
Cow position:
               
chr1:70483325-70483155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
107, 77
               

               
Conread position:
               
321-488
               

               
Cow position:
               
chr1:50585868-50585700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 78
               

               
Conread position:
               
322-492
               

               
Cow position:
               
chr1:63460889-63461058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
121, 74
               

               
Conread position:
               
323-492
               

               
Cow position:
               
chr1:82537942-82538107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 36
               

               
Conread position:
               
325-492
               

               
Cow position:
               
chr1:70416746-70416580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
104, 71
               

               
Conread position:
               
326-492
               

               
Cow position:
               
chr1:102730747-102730577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
105, 63
               

               
Conread position:
               
330-488
               

               
Cow position:
               
chr1:62469080-62469234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               
Show alignments to all cow chromosomes.