Cow genome map
| Conread name: | Ss1.1-rlyg12_g11.5 | 
| Conread position: | 62-292 | 
| Cow position: | chr3:23277826-23277602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 24, 18 | 
| Conread position: | 67-451 | 
| Cow position: | chr3:67544158-67543760 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 19, 359 | 
| Conread position: | 70-479 | 
| Cow position: | chr3:6689713-6690140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 30, 357 | 
| Conread position: | 75-282 | 
| Cow position: | chr3:364492-364281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 60, 15 | 
| Conread position: | 75-286 | 
| Cow position: | chr3:18557909-18558106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 60, 50 | 
| Conread position: | 76-273 | 
| Cow position: | chr3:52147954-52147748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 55, 161 | 
| Conread position: | 76-295 | 
| Cow position: | chr3:71430488-71430263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 77-279 | 
| Cow position: | chr3:55970953-55971154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 58, 11 | 
| Conread position: | 81-478 | 
| Cow position: | chr3:8060863-8061260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 66 | 
| Conread position: | 81-490 | 
| Cow position: | chr3:68881382-68880983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 47 | 
| Conread position: | 81-492 | 
| Cow position: | chr3:18393653-18393252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 54, 70 | 
| Conread position: | 83-281 | 
| Cow position: | chr3:27285958-27286162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 83-294 | 
| Cow position: | chr3:43657979-43657765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 29, 156 | 
| Conread position: | 83-300 | 
| Cow position: | chr3:44623166-44622934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 84-381 | 
| Cow position: | chr3:26553977-26553675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 50, 19 | 
| Conread position: | 84-442 | 
| Cow position: | chr3:4049943-4050290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 7, 52 | 
| Conread position: | 84-442 | 
| Cow position: | chr3:37186566-37186924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 7, 68 | 
| Conread position: | 84-492 | 
| Cow position: | chr3:54903303-54903717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 51, 14 | 
| Conread position: | 85-236 | 
| Cow position: | chr3:12670954-12670811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 49, 18 | 
| Conread position: | 85-295 | 
| Cow position: | chr3:15081004-15080802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 51, 88 | 
| Conread position: | 85-399 | 
| Cow position: | chr3:68583267-68582942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 46, 11 | 
| Conread position: | 85-431 | 
| Cow position: | chr3:28908460-28908115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 51, 65 | 
| Conread position: | 85-451 | 
| Cow position: | chr3:31206607-31206982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 50, 64 | 
| Conread position: | 85-477 | 
| Cow position: | chr3:7338040-7337649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 163 | 
| Conread position: | 85-488 | 
| Cow position: | chr3:68303063-68303464 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 50, 143 | 
| Conread position: | 85-492 | 
| Cow position: | chr3:17222409-17221983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 62 | 
| Conread position: | 85-492 | 
| Cow position: | chr3:53046922-53046508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 66 | 
| Conread position: | 86-296 | 
| Cow position: | chr3:8604277-8604069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 48, 10 | 
| Conread position: | 86-296 | 
| Cow position: | chr3:54862686-54862470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 86-299 | 
| Cow position: | chr3:57554109-57553903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 46, 11 | 
| Conread position: | 86-300 | 
| Cow position: | chr3:4223053-4223262 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 74, 22 | 
| Conread position: | 86-447 | 
| Cow position: | chr3:57624201-57624566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 12, 67 | 
| Conread position: | 86-458 | 
| Cow position: | chr3:2680248-2680628 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 11 | 
| Conread position: | 86-470 | 
| Cow position: | chr3:75046136-75045742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 48, 72 | 
| Conread position: | 86-482 | 
| Cow position: | chr3:47284572-47284950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 12, 65 | 
| Conread position: | 86-490 | 
| Cow position: | chr3:54782274-54781845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 41, 31 | 
| Conread position: | 87-209 | 
| Cow position: | chr3:9638856-9638736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 98 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 48, 63 | 
| Conread position: | 87-279 | 
| Cow position: | chr3:6078598-6078402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 87-451 | 
| Cow position: | chr3:50069516-50069871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 48, 63 | 
| Conread position: | 88-242 | 
| Cow position: | chr3:22908096-22907940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 47, 103 | 
| Conread position: | 88-245 | 
| Cow position: | chr3:58158728-58158569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 48, 8 | 
| Conread position: | 88-245 | 
| Cow position: | chr3:61262541-61262698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-260 | 
| Cow position: | chr3:11640172-11640342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 43, 62 | 
| Conread position: | 88-264 | 
| Cow position: | chr3:36657032-36656856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 43, 63 | 
| Conread position: | 88-264 | 
| Cow position: | chr3:55460763-55460581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 88-267 | 
| Cow position: | chr3:44861570-44861387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 88-274 | 
| Cow position: | chr3:53903924-53904102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 46, 63 | 
| Conread position: | 88-276 | 
| Cow position: | chr3:42483638-42483826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 48, 60 | 
| Conread position: | 88-277 | 
| Cow position: | chr3:68342516-68342327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 44, 67 | 
| Conread position: | 88-279 | 
| Cow position: | chr3:30531692-30531887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 88-279 | 
| Cow position: | chr3:56704799-56704616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 47, 62 | 
| Conread position: | 88-285 | 
| Cow position: | chr3:22170927-22171121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 14, 51 | 
| Conread position: | 88-286 | 
| Cow position: | chr3:79208265-79208063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 47, 166 | 
| Conread position: | 88-288 | 
| Cow position: | chr3:7408221-7408425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 88-289 | 
| Cow position: | chr3:42588087-42588295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 47, 96 | 
| Conread position: | 88-290 | 
| Cow position: | chr3:58951359-58951554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-291 | 
| Cow position: | chr3:4332101-4332305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 46, 191 | 
| Conread position: | 88-292 | 
| Cow position: | chr3:22872314-22872106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 48, 67 | 
| Conread position: | 88-292 | 
| Cow position: | chr3:43528499-43528302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-292 | 
| Cow position: | chr3:63861163-63860951 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 47, 182 | 
| Conread position: | 88-292 | 
| Cow position: | chr3:69849764-69849565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 43, 63 | 
| Conread position: | 88-292 | 
| Cow position: | chr3:69961973-69961775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 44, 67 | 
| Conread position: | 88-292 | 
| Cow position: | chr3:72018857-72019054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 47, 61 | 
| Conread position: | 88-293 | 
| Cow position: | chr3:45647878-45648073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 47, 8 | 
| Conread position: | 88-293 | 
| Cow position: | chr3:64172183-64172382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 88-294 | 
| Cow position: | chr3:51255522-51255731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 38, 68 | 
| Conread position: | 88-294 | 
| Cow position: | chr3:77496555-77496769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 88-295 | 
| Cow position: | chr3:61191179-61190983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 45, 63 | 
| Conread position: | 88-296 | 
| Cow position: | chr3:12255218-12255422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 123, 47 | 
| Conread position: | 88-296 | 
| Cow position: | chr3:23944835-23945043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 69, 49 | 
| Conread position: | 88-296 | 
| Cow position: | chr3:28675727-28675935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 47, 67 | 
| Conread position: | 88-296 | 
| Cow position: | chr3:36174336-36174124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 88-296 | 
| Cow position: | chr3:48269601-48269806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 44, 139 | 
| Conread position: | 88-296 | 
| Cow position: | chr3:50614377-50614582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 88-296 | 
| Cow position: | chr3:53588652-53588441 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 63, 50 | 
| Conread position: | 88-296 | 
| Cow position: | chr3:61678429-61678640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 43, 86 | 
| Conread position: | 88-297 | 
| Cow position: | chr3:34316226-34316012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 88-299 | 
| Cow position: | chr3:8457394-8457604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 47, 24 | 
| Conread position: | 88-299 | 
| Cow position: | chr3:13899715-13899498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 88-299 | 
| Cow position: | chr3:17952394-17952604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 47, 76 | 
| Conread position: | 88-299 | 
| Cow position: | chr3:27544591-27544385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-299 | 
| Cow position: | chr3:41367245-41367038 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 43, 9 | 
| Conread position: | 88-299 | 
| Cow position: | chr3:60892370-60892570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-300 | 
| Cow position: | chr3:84000350-84000562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 47, 87 | 
| Conread position: | 88-304 | 
| Cow position: | chr3:48370869-48371089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 47, 67 | 
| Conread position: | 88-306 | 
| Cow position: | chr3:59514849-59515058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-306 | 
| Cow position: | chr3:78201005-78201223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 43, 170 | 
| Conread position: | 88-306 | 
| Cow position: | chr3:81939989-81940213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 43, 187 | 
| Conread position: | 88-309 | 
| Cow position: | chr3:77227056-77227281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 88-312 | 
| Cow position: | chr3:30417867-30418090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 47, 67 | 
| Conread position: | 88-312 | 
| Cow position: | chr3:58383706-58383927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-316 | 
| Cow position: | chr3:11019856-11020093 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 88-316 | 
| Cow position: | chr3:21341226-21340997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 61, 45 | 
| Conread position: | 88-330 | 
| Cow position: | chr3:19789381-19789125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 46, 128 | 
| Conread position: | 88-330 | 
| Cow position: | chr3:82657347-82657098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-331 | 
| Cow position: | chr3:17284574-17284823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 14, 68 | 
| Conread position: | 88-331 | 
| Cow position: | chr3:56637404-56637655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 49, 133 | 
| Conread position: | 88-333 | 
| Cow position: | chr3:33633149-33632909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 46, 55 | 
| Conread position: | 88-337 | 
| Cow position: | chr3:66885300-66885053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 47, 167 | 
| Conread position: | 88-338 | 
| Cow position: | chr3:17451196-17450942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 43, 140 | 
| Conread position: | 88-354 | 
| Cow position: | chr3:5416493-5416207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 88-362 | 
| Cow position: | chr3:48530375-48530654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-382 | 
| Cow position: | chr3:15057860-15057579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 44, 67 | 
| Conread position: | 88-382 | 
| Cow position: | chr3:61278644-61278950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 48, 91 | 
| Conread position: | 88-383 | 
| Cow position: | chr3:4457338-4457029 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 47, 149 | 
| Conread position: | 88-383 | 
| Cow position: | chr3:59603705-59604011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 124, 48 | 
| Conread position: | 88-383 | 
| Cow position: | chr3:83920936-83921226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 51, 156 | 
| Conread position: | 88-384 | 
| Cow position: | chr3:35702624-35702925 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 47, 67 | 
| Conread position: | 88-385 | 
| Cow position: | chr3:49382690-49382993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 46, 61 | 
| Conread position: | 88-386 | 
| Cow position: | chr3:17895592-17895894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 46, 65 | 
| Conread position: | 88-394 | 
| Cow position: | chr3:80818467-80818771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 43, 35 | 
| Conread position: | 88-395 | 
| Cow position: | chr3:66610100-66609790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 60 | 
| Conread position: | 88-411 | 
| Cow position: | chr3:59798992-59799316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 43, 56 | 
| Conread position: | 88-418 | 
| Cow position: | chr3:58969158-58968828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 63 | 
| Conread position: | 88-420 | 
| Cow position: | chr3:26219323-26218974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 15 | 
| Conread position: | 88-423 | 
| Cow position: | chr3:5096941-5097286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 64 | 
| Conread position: | 88-424 | 
| Cow position: | chr3:19006405-19006738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-427 | 
| Cow position: | chr3:72675825-72676175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 312 | 
| Conread position: | 88-431 | 
| Cow position: | chr3:525092-525434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-431 | 
| Cow position: | chr3:15229081-15228735 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 46, 61 | 
| Conread position: | 88-431 | 
| Cow position: | chr3:55085446-55085082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 46, 62 | 
| Conread position: | 88-431 | 
| Cow position: | chr3:62826885-62826531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 294 | 
| Conread position: | 88-434 | 
| Cow position: | chr3:37599678-37599337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 43, 62 | 
| Conread position: | 88-434 | 
| Cow position: | chr3:67744890-67744537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 77 | 
| Conread position: | 88-434 | 
| Cow position: | chr3:83816055-83815697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 119 | 
| Conread position: | 88-442 | 
| Cow position: | chr3:73443349-73442999 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 63 | 
| Conread position: | 88-447 | 
| Cow position: | chr3:80053796-80053440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 47, 67 | 
| Conread position: | 88-447 | 
| Cow position: | chr3:80581409-80581759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 46, 63 | 
| Conread position: | 88-449 | 
| Cow position: | chr3:70401641-70402002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 47, 9 | 
| Conread position: | 88-450 | 
| Cow position: | chr3:12712185-12711810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 312 | 
| Conread position: | 88-451 | 
| Cow position: | chr3:70899638-70899996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 61 | 
| Conread position: | 88-451 | 
| Cow position: | chr3:80071855-80072237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 8 | 
| Conread position: | 88-452 | 
| Cow position: | chr3:63179606-63179961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 43, 63 | 
| Conread position: | 88-452 | 
| Cow position: | chr3:78946101-78945730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 40 | 
| Conread position: | 88-458 | 
| Cow position: | chr3:5365424-5365789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 48, 68 | 
| Conread position: | 88-471 | 
| Cow position: | chr3:28898484-28898090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 43, 9 | 
| Conread position: | 88-471 | 
| Cow position: | chr3:73708788-73709176 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 47, 8 | 
| Conread position: | 88-477 | 
| Cow position: | chr3:70566000-70565599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 63 | 
| Conread position: | 88-479 | 
| Cow position: | chr3:4031706-4032104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-479 | 
| Cow position: | chr3:55124540-55124144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 44, 63 | 
| Conread position: | 88-485 | 
| Cow position: | chr3:23169332-23168922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 171 | 
| Conread position: | 88-485 | 
| Cow position: | chr3:31309617-31309208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 43, 62 | 
| Conread position: | 88-485 | 
| Cow position: | chr3:73467357-73467772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 42, 49 | 
| Conread position: | 88-485 | 
| Cow position: | chr3:83455414-83455010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 133 | 
| Conread position: | 88-488 | 
| Cow position: | chr3:15158779-15159180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 63 | 
| Conread position: | 88-488 | 
| Cow position: | chr3:59473850-59474266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 42, 175 | 
| Conread position: | 88-488 | 
| Cow position: | chr3:77365556-77365141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 46, 59 | 
| Conread position: | 88-489 | 
| Cow position: | chr3:78076927-78077337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 165 | 
| Conread position: | 88-490 | 
| Cow position: | chr3:30179820-30180231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 64 | 
| Conread position: | 88-490 | 
| Cow position: | chr3:53150065-53150481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 74 | 
| Conread position: | 88-490 | 
| Cow position: | chr3:69417050-69416630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 43, 369 | 
| Conread position: | 88-491 | 
| Cow position: | chr3:20663800-20663393 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 47, 220 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:2036036-2036454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 48, 67 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:2506743-2506326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 307 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:2518799-2518391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 47, 307 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:2674767-2675182 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:8393084-8393490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 43, 187 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:17937101-17936697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 161 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:22676344-22675957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 50, 35 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:23471730-23471313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 47, 164 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:26903853-26904249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 7e-38 | 
| Alignm gaps (pig, cow): | 43, 93 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:30463428-30463026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 48, 63 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:38863851-38864268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 23, 67 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:45881647-45882049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 63 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:46161107-46160709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 43, 62 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:48362821-48363219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 42 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:49119294-49118880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 21, 285 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:51578583-51578174 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 81 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:60597286-60597687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 42, 63 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:64281198-64280788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 323 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:65236763-65237173 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 58 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:70895784-70896189 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 178 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:73394854-73395265 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 249 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:75080504-75080902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 164 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:75479750-75480148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 63 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:78443825-78443417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 43, 169 | 
| Conread position: | 88-492 | 
| Cow position: | chr3:80973091-80973501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 47, 151 | 
| Conread position: | 90-264 | 
| Cow position: | chr3:8147925-8147755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 47, 61 | 
| Conread position: | 90-426 | 
| Cow position: | chr3:5374073-5374411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 46, 96 | 
| Conread position: | 90-434 | 
| Cow position: | chr3:13577446-13577111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 41, 60 | 
| Conread position: | 90-462 | 
| Cow position: | chr3:71497405-71497017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 40, 99 | 
| Conread position: | 90-481 | 
| Cow position: | chr3:2630538-2630902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 59, 34 | 
| Conread position: | 90-491 | 
| Cow position: | chr3:29812982-29813375 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 97 | 
| Conread position: | 90-492 | 
| Cow position: | chr3:83442139-83441743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 42, 7 | 
| Conread position: | 91-245 | 
| Cow position: | chr3:33693390-33693544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 45, 114 | 
| Conread position: | 91-245 | 
| Cow position: | chr3:48923772-48923617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 40, 76 | 
| Conread position: | 91-258 | 
| Cow position: | chr3:18607110-18607279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 41, 144 | 
| Conread position: | 91-267 | 
| Cow position: | chr3:65020075-65020252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 40, 95 | 
| Conread position: | 91-275 | 
| Cow position: | chr3:51609556-51609745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 91-290 | 
| Cow position: | chr3:45307675-45307872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 44, 127 | 
| Conread position: | 91-292 | 
| Cow position: | chr3:73590257-73590058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 44, 25 | 
| Conread position: | 91-293 | 
| Cow position: | chr3:53509945-53509743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 44, 64 | 
| Conread position: | 91-293 | 
| Cow position: | chr3:62883943-62884147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 11, 149 | 
| Conread position: | 91-299 | 
| Cow position: | chr3:12286976-12287179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 58, 91 | 
| Conread position: | 91-307 | 
| Cow position: | chr3:19198423-19198631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 44, 12 | 
| Conread position: | 91-334 | 
| Cow position: | chr3:7366134-7365895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 196, 47 | 
| Conread position: | 91-366 | 
| Cow position: | chr3:76172921-76172644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 59, 38 | 
| Conread position: | 91-372 | 
| Cow position: | chr3:29807203-29807494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 44, 97 | 
| Conread position: | 91-380 | 
| Cow position: | chr3:29507337-29507621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 43, 58 | 
| Conread position: | 91-381 | 
| Cow position: | chr3:39171743-39171446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 44, 59 | 
| Conread position: | 91-383 | 
| Cow position: | chr3:46350400-46350713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 45, 271 | 
| Conread position: | 91-387 | 
| Cow position: | chr3:73759776-73759471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 43, 32 | 
| Conread position: | 91-395 | 
| Cow position: | chr3:36672262-36671940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 43, 289 | 
| Conread position: | 91-395 | 
| Cow position: | chr3:81277962-81277638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 91-413 | 
| Cow position: | chr3:69750959-69750641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 46 | 
| Conread position: | 91-431 | 
| Cow position: | chr3:10347096-10347443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 58 | 
| Conread position: | 91-436 | 
| Cow position: | chr3:8393678-8394034 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 6, 60 | 
| Conread position: | 91-449 | 
| Cow position: | chr3:59630758-59630407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 39, 59 | 
| Conread position: | 91-449 | 
| Cow position: | chr3:72168979-72168618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 44, 7 | 
| Conread position: | 91-454 | 
| Cow position: | chr3:20129683-20130043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 40, 60 | 
| Conread position: | 91-468 | 
| Cow position: | chr3:53112910-53113303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 44, 311 | 
| Conread position: | 91-472 | 
| Cow position: | chr3:79220592-79220991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 44, 6 | 
| Conread position: | 91-479 | 
| Cow position: | chr3:57763964-57764354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 258 | 
| Conread position: | 91-479 | 
| Cow position: | chr3:77271526-77271141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 40, 60 | 
| Conread position: | 91-485 | 
| Cow position: | chr3:15387953-15388365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 44, 6 | 
| Conread position: | 91-488 | 
| Cow position: | chr3:44101723-44102113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 126, 47 | 
| Conread position: | 91-488 | 
| Cow position: | chr3:58540792-58540371 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 44, 150 | 
| Conread position: | 91-489 | 
| Cow position: | chr3:54945866-54946271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 12 | 
| Conread position: | 91-490 | 
| Cow position: | chr3:14552619-14553020 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 60 | 
| Conread position: | 91-490 | 
| Cow position: | chr3:23876739-23877148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 45, 60 | 
| Conread position: | 91-490 | 
| Cow position: | chr3:51234355-51233956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 43, 60 | 
| Conread position: | 91-490 | 
| Cow position: | chr3:53739449-53739049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 45, 319 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:9641305-9641705 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 64 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:16333547-16333954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 40, 59 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:17456527-17456117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 44, 14 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:17695264-17694852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 44, 99 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:17957208-17957611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 45, 25 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:21302689-21302293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 41, 64 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:22221093-22221476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 44, 53 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:33253140-33252742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 60 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:45647417-45647816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 157 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:52607924-52608331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 301 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:55190010-55189600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 67 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:77188184-77188590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 40, 7 | 
| Conread position: | 91-492 | 
| Cow position: | chr3:82020103-82019692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 321 | 
| Conread position: | 92-205 | 
| Cow position: | chr3:2335024-2335140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 117 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 92-209 | 
| Cow position: | chr3:18887321-18887443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 123 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 92-216 | 
| Cow position: | chr3:59179147-59179274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 92-232 | 
| Cow position: | chr3:8901163-8901300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 43, 24 | 
| Conread position: | 92-259 | 
| Cow position: | chr3:42423589-42423425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-264 | 
| Cow position: | chr3:26493483-26493308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 46, 16 | 
| Conread position: | 92-264 | 
| Cow position: | chr3:34392355-34392184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 43, 94 | 
| Conread position: | 92-264 | 
| Cow position: | chr3:61467347-61467520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 40, 155 | 
| Conread position: | 92-268 | 
| Cow position: | chr3:8557039-8556868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 40, 61 | 
| Conread position: | 92-268 | 
| Cow position: | chr3:83369064-83369233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 39, 57 | 
| Conread position: | 92-275 | 
| Cow position: | chr3:16004244-16004066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 43, 58 | 
| Conread position: | 92-279 | 
| Cow position: | chr3:11333575-11333385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 39, 5 | 
| Conread position: | 92-292 | 
| Cow position: | chr3:54959932-54960129 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 42, 59 | 
| Conread position: | 92-293 | 
| Cow position: | chr3:54881498-54881702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 69, 46 | 
| Conread position: | 92-296 | 
| Cow position: | chr3:49218566-49218369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 99, 40 | 
| Conread position: | 92-297 | 
| Cow position: | chr3:2024926-2025131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 39, 57 | 
| Conread position: | 92-298 | 
| Cow position: | chr3:4087424-4087217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-299 | 
| Cow position: | chr3:19708358-19708156 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 39, 11 | 
| Conread position: | 92-299 | 
| Cow position: | chr3:61857238-61857449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 43, 198 | 
| Conread position: | 92-300 | 
| Cow position: | chr3:7858094-7858317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 92-300 | 
| Cow position: | chr3:13118087-13118289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 43, 125 | 
| Conread position: | 92-300 | 
| Cow position: | chr3:35283356-35283141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 92-301 | 
| Cow position: | chr3:49731896-49731691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-304 | 
| Cow position: | chr3:6853759-6853552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-306 | 
| Cow position: | chr3:59205982-59206200 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 45, 149 | 
| Conread position: | 92-307 | 
| Cow position: | chr3:67161673-67161896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 43, 212 | 
| Conread position: | 92-358 | 
| Cow position: | chr3:16157422-16157693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 43, 138 | 
| Conread position: | 92-379 | 
| Cow position: | chr3:33698463-33698769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 92-382 | 
| Cow position: | chr3:23448389-23448096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 39, 58 | 
| Conread position: | 92-383 | 
| Cow position: | chr3:14263134-14263435 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-383 | 
| Cow position: | chr3:18854835-18855117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-383 | 
| Cow position: | chr3:51012791-51012511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 39, 56 | 
| Conread position: | 92-383 | 
| Cow position: | chr3:59366288-59366595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 7, 262 | 
| Conread position: | 92-383 | 
| Cow position: | chr3:61539538-61539843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 43, 283 | 
| Conread position: | 92-384 | 
| Cow position: | chr3:79902245-79902539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 297 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-386 | 
| Cow position: | chr3:27289679-27289985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 39, 82 | 
| Conread position: | 92-394 | 
| Cow position: | chr3:2216101-2216421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 92-395 | 
| Cow position: | chr3:20437904-20437602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-398 | 
| Cow position: | chr3:66375063-66375377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 119, 58 | 
| Conread position: | 92-416 | 
| Cow position: | chr3:75711060-75711379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 50 | 
| Conread position: | 92-418 | 
| Cow position: | chr3:61840031-61840350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 39, 59 | 
| Conread position: | 92-418 | 
| Cow position: | chr3:65800334-65800662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 86 | 
| Conread position: | 92-418 | 
| Cow position: | chr3:79292576-79292903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-418 | 
| Cow position: | chr3:81371398-81371724 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 40, 59 | 
| Conread position: | 92-424 | 
| Cow position: | chr3:35852726-35852390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 43, 116 | 
| Conread position: | 92-431 | 
| Cow position: | chr3:6873503-6873164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 39, 59 | 
| Conread position: | 92-431 | 
| Cow position: | chr3:34270672-34271002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 201, 27 | 
| Conread position: | 92-432 | 
| Cow position: | chr3:66292437-66292087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-443 | 
| Cow position: | chr3:49230752-49231099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 39, 189 | 
| Conread position: | 92-445 | 
| Cow position: | chr3:29596136-29596490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 46, 59 | 
| Conread position: | 92-445 | 
| Cow position: | chr3:59208556-59208894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 57 | 
| Conread position: | 92-445 | 
| Cow position: | chr3:79148534-79148185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 43, 200 | 
| Conread position: | 92-447 | 
| Cow position: | chr3:55272301-55271943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 63 | 
| Conread position: | 92-448 | 
| Cow position: | chr3:61143835-61144201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 43, 189 | 
| Conread position: | 92-450 | 
| Cow position: | chr3:18066876-18067239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-450 | 
| Cow position: | chr3:53573008-53572647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-450 | 
| Cow position: | chr3:59691646-59691993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 39, 58 | 
| Conread position: | 92-450 | 
| Cow position: | chr3:81471359-81470987 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 39, 58 | 
| Conread position: | 92-451 | 
| Cow position: | chr3:5101018-5100662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 42, 11 | 
| Conread position: | 92-451 | 
| Cow position: | chr3:22716538-22716190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 59 | 
| Conread position: | 92-451 | 
| Cow position: | chr3:25690527-25690899 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 39, 191 | 
| Conread position: | 92-451 | 
| Cow position: | chr3:31056260-31055907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 43, 145 | 
| Conread position: | 92-451 | 
| Cow position: | chr3:52863442-52863073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 43, 16 | 
| Conread position: | 92-451 | 
| Cow position: | chr3:56059549-56059917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 59 | 
| Conread position: | 92-472 | 
| Cow position: | chr3:51604865-51604487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 43, 165 | 
| Conread position: | 92-478 | 
| Cow position: | chr3:80564702-80565100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 320 | 
| Conread position: | 92-479 | 
| Cow position: | chr3:14601972-14601566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 60 | 
| Conread position: | 92-481 | 
| Cow position: | chr3:10958487-10958102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 56 | 
| Conread position: | 92-481 | 
| Cow position: | chr3:23408601-23408224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 58 | 
| Conread position: | 92-481 | 
| Cow position: | chr3:26682052-26681675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 59 | 
| Conread position: | 92-485 | 
| Cow position: | chr3:4461747-4461346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 5.04467e-44 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-485 | 
| Cow position: | chr3:18459779-18459391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 64 | 
| Conread position: | 92-485 | 
| Cow position: | chr3:29887682-29887294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 171 | 
| Conread position: | 92-485 | 
| Cow position: | chr3:32584900-32585288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 59 | 
| Conread position: | 92-485 | 
| Cow position: | chr3:48241363-48241753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 43, 70 | 
| Conread position: | 92-485 | 
| Cow position: | chr3:53909854-53910252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 26, 52 | 
| Conread position: | 92-485 | 
| Cow position: | chr3:75158107-75158501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-488 | 
| Cow position: | chr3:72390822-72391234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 289 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 98 | 
| Conread position: | 92-490 | 
| Cow position: | chr3:11987073-11987476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 39, 5 | 
| Conread position: | 92-490 | 
| Cow position: | chr3:15954335-15953934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-490 | 
| Cow position: | chr3:34096212-34095824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 43, 57 | 
| Conread position: | 92-490 | 
| Cow position: | chr3:45279199-45279617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 33, 25 | 
| Conread position: | 92-490 | 
| Cow position: | chr3:50768420-50768827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 306 | 
| Conread position: | 92-490 | 
| Cow position: | chr3:53384541-53384132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 43, 56 | 
| Conread position: | 92-490 | 
| Cow position: | chr3:57577436-57577844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 43, 104 | 
| Conread position: | 92-490 | 
| Cow position: | chr3:65968896-65969322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 39, 310 | 
| Conread position: | 92-491 | 
| Cow position: | chr3:53270568-53270982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 42, 75 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:2393224-2392819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 42, 93 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:2397041-2396645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 177 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:3985072-3985466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:9663445-9663019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 43, 174 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:13302114-13301699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 43, 91 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:16547418-16547820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 43, 78 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:20802888-20802490 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 43, 58 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:26065743-26066137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 95 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:31298418-31298007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 43, 341 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:39970130-39969713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 323 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:53592958-53592536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 7e-38 | 
| Alignm gaps (pig, cow): | 35, 11 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:54434715-54435118 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 35, 82 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:55117230-55116827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 40, 198 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:57754742-57754325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 186 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:59001004-59000613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:59604612-59604992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 99 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:60933157-60933568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 43, 85 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:62999263-62998845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 39, 176 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:65058443-65058848 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 73 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:65413534-65413124 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 43, 47 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:66901000-66900576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 43, 59 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:67929524-67929109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 39, 30 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:71237899-71238300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 35 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:72473650-72474072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 44, 5 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:72776982-72777383 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 43, 140 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:74533090-74533484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 162 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:75570700-75570296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 120, 57 | 
| Conread position: | 92-492 | 
| Cow position: | chr3:79884745-79884330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 39, 58 | 
| Conread position: | 93-292 | 
| Cow position: | chr3:25691492-25691695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 42, 99 | 
| Conread position: | 93-299 | 
| Cow position: | chr3:9843326-9843534 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 42, 172 | 
| Conread position: | 93-359 | 
| Cow position: | chr3:8716989-8717260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 43, 25 | 
| Conread position: | 93-375 | 
| Cow position: | chr3:5851185-5850895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 93-383 | 
| Cow position: | chr3:22820312-22820613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 43, 58 | 
| Conread position: | 93-432 | 
| Cow position: | chr3:49650122-49650477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 38, 312 | 
| Conread position: | 93-460 | 
| Cow position: | chr3:73460721-73461083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 39, 102 | 
| Conread position: | 93-485 | 
| Cow position: | chr3:7331374-7330990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 265 | 
| Conread position: | 93-485 | 
| Cow position: | chr3:80740315-80740699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 42, 58 | 
| Conread position: | 93-488 | 
| Cow position: | chr3:3556287-3556694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 41, 17 | 
| Conread position: | 93-490 | 
| Cow position: | chr3:53429147-53428770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 58 | 
| Conread position: | 93-492 | 
| Cow position: | chr3:56476425-56476824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 42, 58 | 
| Conread position: | 93-492 | 
| Cow position: | chr3:74088431-74088027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 42, 159 | 
| Conread position: | 93-492 | 
| Cow position: | chr3:83490819-83491230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 38, 307 | 
| Conread position: | 94-449 | 
| Cow position: | chr3:7678415-7678759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 37, 56 | 
| Conread position: | 95-458 | 
| Cow position: | chr3:25754781-25755136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 3e-39 | 
| Alignm gaps (pig, cow): | 40, 54 | 
| Conread position: | 96-264 | 
| Cow position: | chr3:77276659-77276494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 39, 56 | 
| Conread position: | 96-284 | 
| Cow position: | chr3:23269848-23270031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 39, 53 | 
| Conread position: | 96-290 | 
| Cow position: | chr3:23092237-23092039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 40, 59 | 
| Conread position: | 96-300 | 
| Cow position: | chr3:45524010-45524213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 39, 55 | 
| Conread position: | 96-300 | 
| Cow position: | chr3:74621251-74621043 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 35, 110 | 
| Conread position: | 96-316 | 
| Cow position: | chr3:41328201-41328411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 39, 55 | 
| Conread position: | 96-330 | 
| Cow position: | chr3:66978589-66978815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 39, 54 | 
| Conread position: | 96-395 | 
| Cow position: | chr3:56625-56323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 39, 56 | 
| Conread position: | 96-448 | 
| Cow position: | chr3:82056372-82056016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 35, 51 | 
| Conread position: | 96-451 | 
| Cow position: | chr3:79592143-79591785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 39, 309 | 
| Conread position: | 96-472 | 
| Cow position: | chr3:1830817-1830443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 35, 29 | 
| Conread position: | 96-482 | 
| Cow position: | chr3:68627929-68627547 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 50 | 
| Conread position: | 96-490 | 
| Cow position: | chr3:26970571-26970961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 206 | 
| Conread position: | 96-492 | 
| Cow position: | chr3:7566673-7566271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 43, 55 | 
| Conread position: | 96-492 | 
| Cow position: | chr3:31419447-31419845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 39, 55 | 
| Conread position: | 96-492 | 
| Cow position: | chr3:71231152-71231548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 39, 49 | 
| Conread position: | 97-295 | 
| Cow position: | chr3:49787153-49787358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 37, 186 | 
| Conread position: | 97-451 | 
| Cow position: | chr3:5045063-5044707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 8e-39 | 
| Alignm gaps (pig, cow): | 38, 307 | 
| Conread position: | 98-289 | 
| Cow position: | chr3:61361150-61361344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 29, 56 | 
| Conread position: | 98-290 | 
| Cow position: | chr3:52650785-52650592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 37, 53 | 
| Conread position: | 98-292 | 
| Cow position: | chr3:15661952-15661759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 37, 53 | 
| Conread position: | 98-300 | 
| Cow position: | chr3:31501095-31501298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 37, 163 | 
| Conread position: | 98-421 | 
| Cow position: | chr3:45534552-45534218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 150 | 
| Conread position: | 98-437 | 
| Cow position: | chr3:14626404-14626055 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 37, 50 | 
| Conread position: | 98-442 | 
| Cow position: | chr3:3738232-3738578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 130 | 
| Conread position: | 98-470 | 
| Cow position: | chr3:59392362-59391997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 37, 138 | 
| Conread position: | 98-482 | 
| Cow position: | chr3:16752505-16752114 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 57 | 
| Conread position: | 98-485 | 
| Cow position: | chr3:74233943-74234328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 52 | 
| Conread position: | 98-490 | 
| Cow position: | chr3:68708256-68707874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 29 | 
| Conread position: | 98-492 | 
| Cow position: | chr3:13353105-13353514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 273 | 
| Conread position: | 99-263 | 
| Cow position: | chr3:14717553-14717722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 8, 153 | 
| Conread position: | 99-414 | 
| Cow position: | chr3:11711702-11712036 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 50, 305 | 
| Conread position: | 99-492 | 
| Cow position: | chr3:20997231-20996852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 38, 52 | 
| Conread position: | 99-492 | 
| Cow position: | chr3:79825167-79824769 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 9, 57 | 
| Conread position: | 101-387 | 
| Cow position: | chr3:31047199-31046906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 15, 50 | 
| Conread position: | 101-455 | 
| Cow position: | chr3:55836078-55835712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 315 | 
| Conread position: | 103-258 | 
| Cow position: | chr3:12563231-12563385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 103-293 | 
| Cow position: | chr3:26894414-26894604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 31, 48 | 
| Conread position: | 103-298 | 
| Cow position: | chr3:44535014-44534813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 31, 46 | 
| Conread position: | 103-299 | 
| Cow position: | chr3:22924645-22924463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 103-299 | 
| Cow position: | chr3:55947328-55947531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 103-307 | 
| Cow position: | chr3:15752875-15752679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 32, 48 | 
| Conread position: | 103-378 | 
| Cow position: | chr3:63332563-63332855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 103-389 | 
| Cow position: | chr3:42177911-42178201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 32, 110 | 
| Conread position: | 103-491 | 
| Cow position: | chr3:43233256-43233652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 297 | 
| Conread position: | 103-492 | 
| Cow position: | chr3:11254396-11254015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 28, 9 | 
| Conread position: | 103-492 | 
| Cow position: | chr3:15052192-15051802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 9.94922e-44 | 
| Alignm gaps (pig, cow): | 33, 48 | 
| Conread position: | 103-492 | 
| Cow position: | chr3:15672389-15672003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 106, 15 | 
| Conread position: | 103-492 | 
| Cow position: | chr3:18686669-18687051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 31, 45 | 
| Conread position: | 103-492 | 
| Cow position: | chr3:44932261-44932662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 293 | 
| Conread position: | 103-492 | 
| Cow position: | chr3:52652321-52651930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 32, 48 | 
| Conread position: | 103-492 | 
| Cow position: | chr3:59610971-59610569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 70 | 
| Conread position: | 104-334 | 
| Cow position: | chr3:74409245-74409478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 32, 47 | 
| Conread position: | 104-402 | 
| Cow position: | chr3:74878835-74878528 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 107, 46 | 
| Conread position: | 104-414 | 
| Cow position: | chr3:23445136-23444817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 31, 47 | 
| Conread position: | 104-431 | 
| Cow position: | chr3:115961-116278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 32, 20 | 
| Conread position: | 105-383 | 
| Cow position: | chr3:30055691-30055415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1.00053e-42 | 
| Alignm gaps (pig, cow): | 26, 44 | 
| Conread position: | 105-451 | 
| Cow position: | chr3:49461182-49460820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 31, 313 | 
| Conread position: | 106-264 | 
| Cow position: | chr3:35074437-35074596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 29, 43 | 
| Conread position: | 106-427 | 
| Cow position: | chr3:73764440-73764116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 29, 41 | 
| Conread position: | 106-451 | 
| Cow position: | chr3:77006261-77006578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 29, 45 | 
| Conread position: | 106-485 | 
| Cow position: | chr3:49482953-49482569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 45 | 
| Conread position: | 107-490 | 
| Cow position: | chr3:53221771-53222160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 44 | 
| Conread position: | 107-492 | 
| Cow position: | chr3:61224978-61224599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 29, 86 | 
| Conread position: | 108-330 | 
| Cow position: | chr3:81401548-81401323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 27, 82 | 
| Conread position: | 108-443 | 
| Cow position: | chr3:60265479-60265152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 43 | 
| Conread position: | 108-492 | 
| Cow position: | chr3:12705801-12705397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 305 | 
| Conread position: | 108-492 | 
| Cow position: | chr3:48852210-48851817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 27, 286 | 
| Conread position: | 110-296 | 
| Cow position: | chr3:8923803-8923990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 28, 124 | 
| Conread position: | 110-305 | 
| Cow position: | chr3:83201768-83201572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 22, 158 | 
| Conread position: | 110-450 | 
| Cow position: | chr3:39661690-39661352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 24, 41 | 
| Conread position: | 110-488 | 
| Cow position: | chr3:70334941-70334546 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 5e-35 | 
| Alignm gaps (pig, cow): | 24, 14 | 
| Conread position: | 110-490 | 
| Cow position: | chr3:53790781-53790394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 256 | 
| Conread position: | 111-451 | 
| Cow position: | chr3:50762885-50763229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 24, 146 | 
| Conread position: | 111-490 | 
| Cow position: | chr3:22232882-22232520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 23, 36 | 
| Conread position: | 112-292 | 
| Cow position: | chr3:4861451-4861624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 20, 39 | 
| Conread position: | 112-387 | 
| Cow position: | chr3:34937602-34937890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 23, 59 | 
| Conread position: | 112-490 | 
| Cow position: | chr3:63315893-63316275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 23, 141 | 
| Conread position: | 113-431 | 
| Cow position: | chr3:13507226-13507556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 78 | 
| Conread position: | 113-452 | 
| Cow position: | chr3:27940365-27940034 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 22, 42 | 
| Conread position: | 114-461 | 
| Cow position: | chr3:49327701-49328062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 290 | 
| Conread position: | 115-451 | 
| Cow position: | chr3:17447843-17447509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 36 | 
| Conread position: | 115-490 | 
| Cow position: | chr3:27274298-27274675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 36 | 
| Conread position: | 116-492 | 
| Cow position: | chr3:68156496-68156877 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 83 | 
| Conread position: | 117-359 | 
| Cow position: | chr3:55106676-55106421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 117-449 | 
| Cow position: | chr3:67930411-67930081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 7, 36 | 
| Conread position: | 118-381 | 
| Cow position: | chr3:22888148-22887889 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 17, 33 | 
| Conread position: | 118-384 | 
| Cow position: | chr3:21547334-21547057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 17, 140 | 
| Conread position: | 119-492 | 
| Cow position: | chr3:78092740-78092361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 7 | 
| Conread position: | 121-299 | 
| Cow position: | chr3:15859899-15859721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 28, 116 | 
| Conread position: | 121-451 | 
| Cow position: | chr3:59621865-59621542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 173, 17 | 
| Conread position: | 122-313 | 
| Cow position: | chr3:53836913-53836720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 13, 26 | 
| Conread position: | 122-479 | 
| Cow position: | chr3:68146064-68145714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 13, 27 | 
| Conread position: | 123-431 | 
| Cow position: | chr3:15506220-15506536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 41 | 
| Conread position: | 125-492 | 
| Cow position: | chr3:54506486-54506856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 136, 24 | 
| Conread position: | 127-449 | 
| Cow position: | chr3:55712203-55712544 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 22, 284 | 
| Conread position: | 127-490 | 
| Cow position: | chr3:53084175-53083835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 5, 24 | 
| Conread position: | 128-279 | 
| Cow position: | chr3:13686027-13686181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 129-490 | 
| Cow position: | chr3:57273844-57274206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 8.99999e-40 | 
| Alignm gaps (pig, cow): | 176, 96 | 
| Conread position: | 130-323 | 
| Cow position: | chr3:55063087-55062897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 81, 20 | 
| Conread position: | 130-386 | 
| Cow position: | chr3:56301567-56301313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 19, 186 | 
| Conread position: | 131-479 | 
| Cow position: | chr3:11063160-11063504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 3.9937e-43 | 
| Alignm gaps (pig, cow): | 18, 132 | 
| Conread position: | 131-492 | 
| Cow position: | chr3:74754111-74754465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 159, 19 | 
| Conread position: | 132-297 | 
| Cow position: | chr3:75534895-75535054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 79, 18 | 
| Conread position: | 133-375 | 
| Cow position: | chr3:35005561-35005810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 17, 58 | 
| Conread position: | 133-492 | 
| Cow position: | chr3:4319494-4319869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 16, 105 | 
| Conread position: | 133-492 | 
| Cow position: | chr3:25944861-25945245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 17, 289 | 
| Conread position: | 134-262 | 
| Cow position: | chr3:5082857-5082727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 134-306 | 
| Cow position: | chr3:6772813-6772637 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 134-386 | 
| Cow position: | chr3:78896433-78896692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 77, 23 | 
| Conread position: | 134-489 | 
| Cow position: | chr3:70609407-70609772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 116 | 
| Conread position: | 137-492 | 
| Cow position: | chr3:36375760-36375388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 12, 122 | 
| Conread position: | 139-373 | 
| Cow position: | chr3:49132257-49132031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 138, 12 | 
| Conread position: | 141-251 | 
| Cow position: | chr3:14801039-14800930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 89 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 150-386 | 
| Cow position: | chr3:27697180-27696933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 62, 0 | 
| Conread position: | 150-395 | 
| Cow position: | chr3:10896631-10896876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 136, 74 | 
| Conread position: | 150-451 | 
| Cow position: | chr3:1787746-1788042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 64, 103 | 
| Conread position: | 150-454 | 
| Cow position: | chr3:53095137-53094822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 66, 247 | 
| Conread position: | 150-479 | 
| Cow position: | chr3:14598749-14599066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 61, 97 | 
| Conread position: | 150-485 | 
| Cow position: | chr3:38828565-38828894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 42, 136 | 
| Conread position: | 150-492 | 
| Cow position: | chr3:20842057-20841730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 7e-37 | 
| Alignm gaps (pig, cow): | 61, 113 | 
| Conread position: | 152-490 | 
| Cow position: | chr3:38035791-38035440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 60, 255 | 
| Conread position: | 152-490 | 
| Cow position: | chr3:53875958-53875614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 142, 97 | 
| Conread position: | 152-492 | 
| Cow position: | chr3:6182399-6182082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 3.00004e-41 | 
| Alignm gaps (pig, cow): | 146, 95 | 
| Conread position: | 156-423 | 
| Cow position: | chr3:66884136-66883865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 55, 177 | 
| Conread position: | 157-299 | 
| Cow position: | chr3:77665970-77665835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 157-354 | 
| Cow position: | chr3:2198688-2198896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 80, 190 | 
| Conread position: | 157-418 | 
| Cow position: | chr3:3637992-3638253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 56, 177 | 
| Conread position: | 157-442 | 
| Cow position: | chr3:57760304-57760595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 60, 241 | 
| Conread position: | 157-449 | 
| Cow position: | chr3:67698085-67698380 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 109, 70 | 
| Conread position: | 157-479 | 
| Cow position: | chr3:75853523-75853195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 94, 12 | 
| Conread position: | 157-485 | 
| Cow position: | chr3:30940626-30940953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 31 | 
| Conread position: | 157-492 | 
| Cow position: | chr3:23105560-23105215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 254 | 
| Conread position: | 157-492 | 
| Cow position: | chr3:74079833-74079488 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 221 | 
| Conread position: | 160-445 | 
| Cow position: | chr3:63269034-63269325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 128, 43 | 
| Conread position: | 160-492 | 
| Cow position: | chr3:54374052-54373707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 31, 262 | 
| Conread position: | 161-490 | 
| Cow position: | chr3:59596995-59597321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 145, 30 | 
| Conread position: | 162-292 | 
| Cow position: | chr3:27212173-27212302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 163-386 | 
| Cow position: | chr3:56523616-56523401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 128, 17 | 
| Conread position: | 165-492 | 
| Cow position: | chr3:53318217-53318560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 166-307 | 
| Cow position: | chr3:7940741-7940600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 166-418 | 
| Cow position: | chr3:74502507-74502250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 51, 230 | 
| Conread position: | 166-468 | 
| Cow position: | chr3:20678020-20677723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 195 | 
| Conread position: | 166-492 | 
| Cow position: | chr3:7661667-7662007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 112, 185 | 
| Conread position: | 167-308 | 
| Cow position: | chr3:34294469-34294329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 131, 0 | 
| Conread position: | 167-391 | 
| Cow position: | chr3:79092579-79092342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 169-492 | 
| Cow position: | chr3:18426881-18426550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 126, 33 | 
| Conread position: | 170-428 | 
| Cow position: | chr3:34669909-34669648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 8e-28 | 
| Alignm gaps (pig, cow): | 42, 154 | 
| Conread position: | 170-479 | 
| Cow position: | chr3:26981883-26982195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 47, 250 | 
| Conread position: | 174-492 | 
| Cow position: | chr3:75107617-75107922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 273, 87 | 
| Conread position: | 175-492 | 
| Cow position: | chr3:58527220-58527527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 17, 35 | 
| Conread position: | 176-292 | 
| Cow position: | chr3:19792717-19792834 (view UCSC Genome Browser custom track) | 
| Alignm length: | 118 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 176-451 | 
| Cow position: | chr3:26874415-26874699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 49, 19 | 
| Conread position: | 176-490 | 
| Cow position: | chr3:70762298-70761975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 193 | 
| Conread position: | 176-492 | 
| Cow position: | chr3:36418641-36418337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 64 | 
| Conread position: | 176-492 | 
| Cow position: | chr3:76922838-76922523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 218 | 
| Conread position: | 178-492 | 
| Cow position: | chr3:69144533-69144846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 37, 11 | 
| Conread position: | 183-451 | 
| Cow position: | chr3:48810805-48810540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 105, 62 | 
| Conread position: | 183-492 | 
| Cow position: | chr3:54100891-54100563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 188-480 | 
| Cow position: | chr3:48073037-48072745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 304 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 42 | 
| Conread position: | 189-418 | 
| Cow position: | chr3:73915966-73915733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 47, 131 | 
| Conread position: | 189-492 | 
| Cow position: | chr3:68616487-68616185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 106, 49 | 
| Conread position: | 190-451 | 
| Cow position: | chr3:53508460-53508721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 100, 73 | 
| Conread position: | 190-490 | 
| Cow position: | chr3:60264876-60264573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 98, 25 | 
| Conread position: | 191-442 | 
| Cow position: | chr3:74242835-74243089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 98, 57 | 
| Conread position: | 192-492 | 
| Cow position: | chr3:59034874-59035193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 25, 224 | 
| Conread position: | 193-490 | 
| Cow position: | chr3:77581950-77582254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 18, 160 | 
| Conread position: | 193-492 | 
| Cow position: | chr3:15153534-15153838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 93, 204 | 
| Conread position: | 194-491 | 
| Cow position: | chr3:19585704-19586013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 175 | 
| Conread position: | 196-420 | 
| Cow position: | chr3:24935215-24935442 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 91, 205 | 
| Conread position: | 199-405 | 
| Cow position: | chr3:46541980-46541767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 95, 78 | 
| Conread position: | 199-476 | 
| Cow position: | chr3:81039898-81039612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 13, 197 | 
| Conread position: | 199-490 | 
| Cow position: | chr3:17235360-17235056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 87, 16 | 
| Conread position: | 199-490 | 
| Cow position: | chr3:29946242-29946537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 13, 192 | 
| Conread position: | 199-492 | 
| Cow position: | chr3:55177905-55177601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 207 | 
| Conread position: | 199-492 | 
| Cow position: | chr3:70334117-70333819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 12, 234 | 
| Conread position: | 204-492 | 
| Cow position: | chr3:79196612-79196913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 88, 61 | 
| Conread position: | 205-418 | 
| Cow position: | chr3:74584072-74584282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 85, 10 | 
| Conread position: | 205-492 | 
| Cow position: | chr3:3883965-3883670 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 85, 197 | 
| Conread position: | 207-339 | 
| Cow position: | chr3:41508810-41508939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 88, 95 | 
| Conread position: | 211-492 | 
| Cow position: | chr3:78093524-78093243 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 190 | 
| Conread position: | 215-449 | 
| Cow position: | chr3:32457064-32457297 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 5e-24 | 
| Alignm gaps (pig, cow): | 88, 178 | 
| Conread position: | 215-485 | 
| Cow position: | chr3:10372143-10372404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 28, 19 | 
| Conread position: | 215-492 | 
| Cow position: | chr3:17058676-17058397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 77, 10 | 
| Conread position: | 219-492 | 
| Cow position: | chr3:76155855-76156136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 71, 188 | 
| Conread position: | 220-492 | 
| Cow position: | chr3:71238342-71238625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 73, 116 | 
| Conread position: | 225-406 | 
| Cow position: | chr3:12670741-12670552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 68, 18 | 
| Conread position: | 228-488 | 
| Cow position: | chr3:73298963-73299214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 55, 132 | 
| Conread position: | 228-492 | 
| Cow position: | chr3:48468059-48468326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 59, 162 | 
| Conread position: | 232-492 | 
| Cow position: | chr3:15951031-15950767 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 6e-36 | 
| Alignm gaps (pig, cow): | 58, 174 | 
| Conread position: | 233-447 | 
| Cow position: | chr3:63177360-63177586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 53, 171 | 
| Conread position: | 240-490 | 
| Cow position: | chr3:22668303-22668560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 54, 153 | 
| Conread position: | 244-492 | 
| Cow position: | chr3:1036918-1037178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 9, 147 | 
| Conread position: | 244-492 | 
| Cow position: | chr3:9116920-9117184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 43, 114 | 
| Conread position: | 246-491 | 
| Cow position: | chr3:3316918-3316659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 42, 127 | 
| Conread position: | 246-492 | 
| Cow position: | chr3:22165523-22165265 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 46, 121 | 
| Conread position: | 251-467 | 
| Cow position: | chr3:19626610-19626382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 40, 147 | 
| Conread position: | 251-492 | 
| Cow position: | chr3:44961090-44960868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 5e-34 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 256-485 | 
| Cow position: | chr3:8349651-8349425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 30, 144 | 
| Conread position: | 257-492 | 
| Cow position: | chr3:49363020-49363257 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 35, 19 | 
| Conread position: | 263-451 | 
| Cow position: | chr3:44330527-44330327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 37, 146 | 
| Conread position: | 267-492 | 
| Cow position: | chr3:59299491-59299723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 32, 141 | 
| Conread position: | 271-492 | 
| Cow position: | chr3:76269816-76270038 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 24, 125 | 
| Conread position: | 278-451 | 
| Cow position: | chr3:4480881-4481048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 282-485 | 
| Cow position: | chr3:68004761-68004561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-31 | 
| Alignm gaps (pig, cow): | 162, 107 | 
| Conread position: | 282-492 | 
| Cow position: | chr3:47753167-47753387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 153, 103 | 
| Conread position: | 284-451 | 
| Cow position: | chr3:82629259-82629425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 134, 113 | 
| Conread position: | 286-491 | 
| Cow position: | chr3:49344638-49344844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 150, 111 | 
| Conread position: | 286-492 | 
| Cow position: | chr3:18607615-18607813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 286-492 | 
| Cow position: | chr3:69785680-69785470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 50, 98 | 
| Conread position: | 287-431 | 
| Cow position: | chr3:41652322-41652464 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 287-450 | 
| Cow position: | chr3:55984045-55984203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 287-490 | 
| Cow position: | chr3:31350158-31349960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 162, 110 | 
| Conread position: | 287-492 | 
| Cow position: | chr3:75608446-75608638 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 288-490 | 
| Cow position: | chr3:14546949-14547147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 101, 0 | 
| Conread position: | 288-492 | 
| Cow position: | chr3:10668932-10668729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 4e-32 | 
| Alignm gaps (pig, cow): | 108, 67 | 
| Conread position: | 288-492 | 
| Cow position: | chr3:64196773-64196975 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 289-418 | 
| Cow position: | chr3:20333955-20334082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 108, 0 | 
| Conread position: | 290-492 | 
| Cow position: | chr3:23132220-23132018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 130, 107 | 
| Conread position: | 291-478 | 
| Cow position: | chr3:32409162-32409356 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 135, 98 | 
| Conread position: | 292-485 | 
| Cow position: | chr3:16505524-16505341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 62, 0 | 
| Conread position: | 294-448 | 
| Cow position: | chr3:38100094-38100246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 75, 105 | 
| Conread position: | 298-492 | 
| Cow position: | chr3:26603598-26603396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 39, 102 | 
| Conread position: | 303-470 | 
| Cow position: | chr3:82123586-82123422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 17, 95 | 
| Conread position: | 307-492 | 
| Cow position: | chr3:22924409-22924230 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 9e-29 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 310-482 | 
| Cow position: | chr3:73421524-73421352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 116, 89 | 
| Conread position: | 310-490 | 
| Cow position: | chr3:35238982-35239159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 7e-27 | 
| Alignm gaps (pig, cow): | 118, 87 | 
| Conread position: | 310-490 | 
| Cow position: | chr3:52845520-52845703 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 31, 92 | 
| Conread position: | 310-492 | 
| Cow position: | chr3:20021238-20021418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 6e-25 | 
| Alignm gaps (pig, cow): | 119, 87 | 
| Conread position: | 315-492 | 
| Cow position: | chr3:67407392-67407217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 6e-26 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 320-488 | 
| Cow position: | chr3:19788851-19788685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 130, 77 | 
| Conread position: | 320-492 | 
| Cow position: | chr3:31115291-31115128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 325-479 | 
| Cow position: | chr3:25038008-25037857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 330-492 | 
| Cow position: | chr3:41510565-41510728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 95, 56 | 
| Conread position: | 341-492 | 
| Cow position: | chr3:17531738-17531586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 88, 56 | 
| Conread position: | 357-492 | 
| Cow position: | chr3:2636965-2637095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 4e-22 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 357-492 | 
| Cow position: | chr3:10115314-10115445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 30, 0 | 
Show alignments to all cow chromosomes.
