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Cow genome map

           
Conread name:
           
Ss1.1-rlyg12_g11.5
        

               
Conread position:
               
28-492
               

               
Cow position:
               
chrX:38641987-38642445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 14
               

               
Conread position:
               
72-381
               

               
Cow position:
               
chrX:39126110-39126417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
76-488
               

               
Cow position:
               
chrX:10831721-10831282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
59, 350
               

               
Conread position:
               
76-490
               

               
Cow position:
               
chrX:36283117-36283541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 222
               

               
Conread position:
               
77-296
               

               
Cow position:
               
chrX:280907-281118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
77-449
               

               
Cow position:
               
chrX:38852974-38853355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 21
               

               
Conread position:
               
79-274
               

               
Cow position:
               
chrX:44731375-44731571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
79-492
               

               
Cow position:
               
chrX:40035665-40035236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
81-259
               

               
Cow position:
               
chrX:877243-877070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
81-384
               

               
Cow position:
               
chrX:35258951-35258637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 176
               

               
Conread position:
               
81-447
               

               
Cow position:
               
chrX:4044071-4043714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
83-260
               

               
Cow position:
               
chrX:16541895-16541712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
83-424
               

               
Cow position:
               
chrX:7277703-7278043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
84-259
               

               
Cow position:
               
chrX:40116205-40116379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
84-299
               

               
Cow position:
               
chrX:1728637-1728429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
7, 62
               

               
Conread position:
               
84-383
               

               
Cow position:
               
chrX:48652943-48652628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
84-455
               

               
Cow position:
               
chrX:11718000-11717622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
84-485
               

               
Cow position:
               
chrX:46032938-46032530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 102
               

               
Conread position:
               
84-492
               

               
Cow position:
               
chrX:38963889-38964300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 72
               

               
Conread position:
               
85-307
               

               
Cow position:
               
chrX:17271504-17271278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
53, 156
               

               
Conread position:
               
86-253
               

               
Cow position:
               
chrX:6639912-6640082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
45, 10
               

               
Conread position:
               
86-267
               

               
Cow position:
               
chrX:7806165-7806348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
53, 38
               

               
Conread position:
               
86-292
               

               
Cow position:
               
chrX:35681133-35681332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
86-292
               

               
Cow position:
               
chrX:37048793-37048586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
86-295
               

               
Cow position:
               
chrX:11313994-11313787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
49, 10
               

               
Conread position:
               
86-369
               

               
Cow position:
               
chrX:11589804-11589509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
86-492
               

               
Cow position:
               
chrX:8925491-8925883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
49, 65
               

               
Conread position:
               
86-492
               

               
Cow position:
               
chrX:11655874-11656281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 314
               

               
Conread position:
               
86-492
               

               
Cow position:
               
chrX:14884174-14883754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
87-292
               

               
Cow position:
               
chrX:35042006-35042216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
87-334
               

               
Cow position:
               
chrX:42086648-42086890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 134
               

               
Conread position:
               
87-450
               

               
Cow position:
               
chrX:28878373-28878018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
28, 65
               

               
Conread position:
               
87-490
               

               
Cow position:
               
chrX:4768537-4768929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
87-492
               

               
Cow position:
               
chrX:33000691-33001101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
88-200
               

               
Cow position:
               
chrX:33519405-33519520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
88-247
               

               
Cow position:
               
chrX:42855196-42855361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-249
               

               
Cow position:
               
chrX:32978468-32978309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
88-264
               

               
Cow position:
               
chrX:4123623-4123801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-272
               

               
Cow position:
               
chrX:31260842-31260656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 143
               

               
Conread position:
               
88-278
               

               
Cow position:
               
chrX:27106046-27106240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-286
               

               
Cow position:
               
chrX:33855445-33855248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
88-291
               

               
Cow position:
               
chrX:40788992-40789199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 66
               

               
Conread position:
               
88-292
               

               
Cow position:
               
chrX:42282220-42282419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
47, 60
               

               
Conread position:
               
88-292
               

               
Cow position:
               
chrX:42461958-42461753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
46, 103
               

               
Conread position:
               
88-293
               

               
Cow position:
               
chrX:20792030-20791826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
88-293
               

               
Cow position:
               
chrX:25337967-25338177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 155
               

               
Conread position:
               
88-293
               

               
Cow position:
               
chrX:44053046-44053250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
47, 57
               

               
Conread position:
               
88-295
               

               
Cow position:
               
chrX:11674852-11675057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
14, 62
               

               
Conread position:
               
88-295
               

               
Cow position:
               
chrX:33803225-33803010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
51, 72
               

               
Conread position:
               
88-295
               

               
Cow position:
               
chrX:45412867-45412664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chrX:8682142-8681932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
50, 65
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chrX:20582818-20583015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
46, 88
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chrX:20709859-20710069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 193
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chrX:27442767-27442559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 36
               

               
Conread position:
               
88-296
               

               
Cow position:
               
chrX:34192465-34192666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 35
               

               
Conread position:
               
88-298
               

               
Cow position:
               
chrX:41403760-41403976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-298
               

               
Cow position:
               
chrX:41410308-41410524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chrX:10437877-10437670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chrX:19015230-19015431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
88-299
               

               
Cow position:
               
chrX:35609774-35609987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
88-300
               

               
Cow position:
               
chrX:42339148-42338947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-304
               

               
Cow position:
               
chrX:1105016-1104795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chrX:678780-678566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 114
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chrX:25232378-25232596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
88-307
               

               
Cow position:
               
chrX:28111294-28111513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 61
               

               
Conread position:
               
88-318
               

               
Cow position:
               
chrX:38840676-38840905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 71
               

               
Conread position:
               
88-334
               

               
Cow position:
               
chrX:34754404-34754148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 169
               

               
Conread position:
               
88-336
               

               
Cow position:
               
chrX:34990829-34991082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 15
               

               
Conread position:
               
88-367
               

               
Cow position:
               
chrX:38071983-38071689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
88-374
               

               
Cow position:
               
chrX:42507859-42507564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-382
               

               
Cow position:
               
chrX:34663055-34662754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
88-383
               

               
Cow position:
               
chrX:2467667-2467977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 187
               

               
Conread position:
               
88-383
               

               
Cow position:
               
chrX:45404046-45403732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-385
               

               
Cow position:
               
chrX:37843508-37843812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
88-386
               

               
Cow position:
               
chrX:151689-151997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 93
               

               
Conread position:
               
88-386
               

               
Cow position:
               
chrX:23583346-23583657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 151
               

               
Conread position:
               
88-387
               

               
Cow position:
               
chrX:754746-755061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
88-387
               

               
Cow position:
               
chrX:26440992-26440688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 96
               

               
Conread position:
               
88-387
               

               
Cow position:
               
chrX:42499241-42498951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
47, 102
               

               
Conread position:
               
88-394
               

               
Cow position:
               
chrX:11561942-11562250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 14
               

               
Conread position:
               
88-394
               

               
Cow position:
               
chrX:11856217-11856534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
88-395
               

               
Cow position:
               
chrX:26625889-26625566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
47, 158
               

               
Conread position:
               
88-405
               

               
Cow position:
               
chrX:3130369-3130685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 101
               

               
Conread position:
               
88-405
               

               
Cow position:
               
chrX:38936489-38936813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
88-416
               

               
Cow position:
               
chrX:37910240-37910569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-418
               

               
Cow position:
               
chrX:37232197-37232533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 317
               

               
Conread position:
               
88-418
               

               
Cow position:
               
chrX:41884630-41884286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 325
               

               
Conread position:
               
88-421
               

               
Cow position:
               
chrX:37574644-37574969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
88-428
               

               
Cow position:
               
chrX:10412198-10411848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
88-431
               

               
Cow position:
               
chrX:17662809-17662459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 275
               

               
Conread position:
               
88-439
               

               
Cow position:
               
chrX:29289364-29289723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
46, 147
               

               
Conread position:
               
88-440
               

               
Cow position:
               
chrX:22624269-22624625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 39
               

               
Conread position:
               
88-440
               

               
Cow position:
               
chrX:32623370-32623720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
47, 156
               

               
Conread position:
               
88-447
               

               
Cow position:
               
chrX:20697820-20697454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
43, 61
               

               
Conread position:
               
88-448
               

               
Cow position:
               
chrX:23091669-23092027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-450
               

               
Cow position:
               
chrX:45113416-45113776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 61
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chrX:619220-618851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 305
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chrX:14599317-14599689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
47, 194
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chrX:27394226-27393869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chrX:37489518-37489875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 63
               

               
Conread position:
               
88-451
               

               
Cow position:
               
chrX:40269264-40269651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 335
               

               
Conread position:
               
88-455
               

               
Cow position:
               
chrX:20801567-20801930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
213, 60
               

               
Conread position:
               
88-481
               

               
Cow position:
               
chrX:6413834-6414230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 48
               

               
Conread position:
               
88-481
               

               
Cow position:
               
chrX:42381312-42380918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 93
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chrX:10866079-10865674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
47, 9
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chrX:12980043-12979639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 297
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chrX:13647996-13647588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 67
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chrX:27432131-27431725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 319
               

               
Conread position:
               
88-485
               

               
Cow position:
               
chrX:41673891-41674296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 311
               

               
Conread position:
               
88-488
               

               
Cow position:
               
chrX:21672339-21672761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 319
               

               
Conread position:
               
88-488
               

               
Cow position:
               
chrX:22074588-22074995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 63
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:1616260-1615855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 270
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:3654392-3654806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 314
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:5872101-5872535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 188
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:9252390-9251960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 333
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:9651258-9650824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
44, 189
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:15007363-15006956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:20340103-20339692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:23514230-23513804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 29
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:25816108-25815696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:26492790-26493210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 337
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:28847091-28846689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
43, 62
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:30921973-30922375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
128, 43
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:35268678-35269059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:38549236-38549649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:40826959-40826547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
112, 49
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:42247396-42246978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 97
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chrX:47344082-47344502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 108
               

               
Conread position:
               
89-296
               

               
Cow position:
               
chrX:29032203-29032405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
148, 50
               

               
Conread position:
               
89-381
               

               
Cow position:
               
chrX:6278717-6278407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
89-492
               

               
Cow position:
               
chrX:45598815-45598405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
89-492
               

               
Cow position:
               
chrX:46587607-46588023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
42, 7
               

               
Conread position:
               
90-288
               

               
Cow position:
               
chrX:46315591-46315390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
90-295
               

               
Cow position:
               
chrX:31340494-31340704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
90-296
               

               
Cow position:
               
chrX:41790656-41790449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
8, 95
               

               
Conread position:
               
90-394
               

               
Cow position:
               
chrX:21004473-21004788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
46, 11
               

               
Conread position:
               
90-395
               

               
Cow position:
               
chrX:27680191-27680503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
90-451
               

               
Cow position:
               
chrX:34502708-34503079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 306
               

               
Conread position:
               
90-490
               

               
Cow position:
               
chrX:31294754-31294368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
90-492
               

               
Cow position:
               
chrX:23497875-23497494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 65
               

               
Conread position:
               
91-261
               

               
Cow position:
               
chrX:46430067-46429898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
91-262
               

               
Cow position:
               
chrX:16324173-16324003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
91-281
               

               
Cow position:
               
chrX:38967441-38967628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
91-288
               

               
Cow position:
               
chrX:45015377-45015566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
91-290
               

               
Cow position:
               
chrX:12018066-12018281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
91-292
               

               
Cow position:
               
chrX:6234658-6234461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
91-292
               

               
Cow position:
               
chrX:12115831-12116037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 6
               

               
Conread position:
               
91-292
               

               
Cow position:
               
chrX:19019320-19019114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 102
               

               
Conread position:
               
91-293
               

               
Cow position:
               
chrX:13245382-13245587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
49, 63
               

               
Conread position:
               
91-296
               

               
Cow position:
               
chrX:11806226-11806018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
91-297
               

               
Cow position:
               
chrX:29509651-29509444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chrX:7718645-7718852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
91-299
               

               
Cow position:
               
chrX:47453917-47454128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 101
               

               
Conread position:
               
91-306
               

               
Cow position:
               
chrX:35284415-35284625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
91-307
               

               
Cow position:
               
chrX:28836110-28835899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
91-318
               

               
Cow position:
               
chrX:23572008-23571783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
91-374
               

               
Cow position:
               
chrX:13265829-13265543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
91-394
               

               
Cow position:
               
chrX:6488378-6488680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
91-394
               

               
Cow position:
               
chrX:17042481-17042786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
91-395
               

               
Cow position:
               
chrX:37836378-37836684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
91-405
               

               
Cow position:
               
chrX:7508931-7509252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 12
               

               
Conread position:
               
91-418
               

               
Cow position:
               
chrX:35224093-35224422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
58, 6
               

               
Conread position:
               
91-418
               

               
Cow position:
               
chrX:39558556-39558223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
91-442
               

               
Cow position:
               
chrX:7646051-7646405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
44, 60
               

               
Conread position:
               
91-449
               

               
Cow position:
               
chrX:45845886-45846258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 253
               

               
Conread position:
               
91-450
               

               
Cow position:
               
chrX:28134137-28134496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
91-451
               

               
Cow position:
               
chrX:5017617-5017262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
91-451
               

               
Cow position:
               
chrX:13382116-13382482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 256
               

               
Conread position:
               
91-451
               

               
Cow position:
               
chrX:18695129-18694771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
91-451
               

               
Cow position:
               
chrX:21593075-21593444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 6
               

               
Conread position:
               
91-452
               

               
Cow position:
               
chrX:35388115-35387768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 206
               

               
Conread position:
               
91-454
               

               
Cow position:
               
chrX:6690457-6690096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
91-479
               

               
Cow position:
               
chrX:45967954-45968336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
36, 60
               

               
Conread position:
               
91-480
               

               
Cow position:
               
chrX:34532319-34532709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
91-485
               

               
Cow position:
               
chrX:13177673-13177285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 7
               

               
Conread position:
               
91-488
               

               
Cow position:
               
chrX:14973944-14973558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 61
               

               
Conread position:
               
91-488
               

               
Cow position:
               
chrX:46073030-46072631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chrX:9425951-9425561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chrX:13912871-13913276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chrX:31436272-31436670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 61
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chrX:42994405-42994795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 46
               

               
Conread position:
               
91-491
               

               
Cow position:
               
chrX:29602040-29601627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 12
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chrX:4633060-4632651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 58
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chrX:16762563-16762971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chrX:24366040-24365619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
40, 6
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chrX:27446479-27446886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
44, 95
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chrX:29542428-29542025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 60
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chrX:30338133-30337751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
43, 60
               

               
Conread position:
               
92-217
               

               
Cow position:
               
chrX:2523937-2523809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
92-245
               

               
Cow position:
               
chrX:48370888-48371044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 96
               

               
Conread position:
               
92-253
               

               
Cow position:
               
chrX:23061245-23061398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 86
               

               
Conread position:
               
92-259
               

               
Cow position:
               
chrX:9855092-9855263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
92-275
               

               
Cow position:
               
chrX:9416901-9416719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-275
               

               
Cow position:
               
chrX:9997542-9997361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-277
               

               
Cow position:
               
chrX:4942958-4942780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 65
               

               
Conread position:
               
92-281
               

               
Cow position:
               
chrX:19930447-19930631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
92-284
               

               
Cow position:
               
chrX:33020277-33020467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-292
               

               
Cow position:
               
chrX:2383280-2383480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
92-292
               

               
Cow position:
               
chrX:23970180-23970367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-292
               

               
Cow position:
               
chrX:42874769-42874975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chrX:7497035-7497232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chrX:17631011-17630814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 57
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chrX:25419370-25419165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chrX:28097916-28098104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
92-293
               

               
Cow position:
               
chrX:30162788-30162989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
145, 46
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chrX:488281-488487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
68, 46
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chrX:41743704-41743908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-299
               

               
Cow position:
               
chrX:8070909-8070699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
92-299
               

               
Cow position:
               
chrX:25237968-25238168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
92-300
               

               
Cow position:
               
chrX:21665802-21665595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-305
               

               
Cow position:
               
chrX:40647769-40647990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
92-306
               

               
Cow position:
               
chrX:14924792-14925007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
43, 28
               

               
Conread position:
               
92-332
               

               
Cow position:
               
chrX:32128189-32127950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
38, 56
               

               
Conread position:
               
92-334
               

               
Cow position:
               
chrX:9953933-9954183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
92-334
               

               
Cow position:
               
chrX:36778199-36778452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
44, 178
               

               
Conread position:
               
92-337
               

               
Cow position:
               
chrX:40452421-40452171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chrX:19690009-19690308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
43, 129
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chrX:46722949-46722641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
92-383
               

               
Cow position:
               
chrX:48195249-48194942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
42, 57
               

               
Conread position:
               
92-386
               

               
Cow position:
               
chrX:9041438-9041148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
92-391
               

               
Cow position:
               
chrX:43527295-43527609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
92-394
               

               
Cow position:
               
chrX:9161379-9161679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
92-394
               

               
Cow position:
               
chrX:15814889-15815187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
92-405
               

               
Cow position:
               
chrX:11082822-11082509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 59
               

               
Conread position:
               
92-418
               

               
Cow position:
               
chrX:7571698-7572032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 45
               

               
Conread position:
               
92-421
               

               
Cow position:
               
chrX:33493566-33493905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 133
               

               
Conread position:
               
92-431
               

               
Cow position:
               
chrX:30421148-30420813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
43, 167
               

               
Conread position:
               
92-431
               

               
Cow position:
               
chrX:37119391-37119731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 54
               

               
Conread position:
               
92-442
               

               
Cow position:
               
chrX:1503130-1503476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 53
               

               
Conread position:
               
92-442
               

               
Cow position:
               
chrX:33639763-33640125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
92-443
               

               
Cow position:
               
chrX:30543495-30543134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
43, 20
               

               
Conread position:
               
92-445
               

               
Cow position:
               
chrX:42470145-42469789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-448
               

               
Cow position:
               
chrX:8797039-8797403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 318
               

               
Conread position:
               
92-449
               

               
Cow position:
               
chrX:42492723-42492369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
92-450
               

               
Cow position:
               
chrX:27514660-27515014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
43, 155
               

               
Conread position:
               
92-450
               

               
Cow position:
               
chrX:40557884-40557520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
92-451
               

               
Cow position:
               
chrX:23564005-23563634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
43, 311
               

               
Conread position:
               
92-452
               

               
Cow position:
               
chrX:42171508-42171138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 311
               

               
Conread position:
               
92-455
               

               
Cow position:
               
chrX:38006976-38006605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 273
               

               
Conread position:
               
92-455
               

               
Cow position:
               
chrX:45414508-45414144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
92-472
               

               
Cow position:
               
chrX:878580-878201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
169, 36
               

               
Conread position:
               
92-475
               

               
Cow position:
               
chrX:17888614-17888244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 47
               

               
Conread position:
               
92-477
               

               
Cow position:
               
chrX:7178700-7179079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
92-479
               

               
Cow position:
               
chrX:30133532-30133130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
92-480
               

               
Cow position:
               
chrX:37072197-37072577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 163
               

               
Conread position:
               
92-485
               

               
Cow position:
               
chrX:7721776-7722173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
92-485
               

               
Cow position:
               
chrX:15147395-15147001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
118, 57
               

               
Conread position:
               
92-485
               

               
Cow position:
               
chrX:45501940-45502334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 141
               

               
Conread position:
               
92-489
               

               
Cow position:
               
chrX:38094734-38094324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 269
               

               
Conread position:
               
92-490
               

               
Cow position:
               
chrX:12437448-12437082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
40, 58
               

               
Conread position:
               
92-490
               

               
Cow position:
               
chrX:27174786-27175201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
14, 59
               

               
Conread position:
               
92-490
               

               
Cow position:
               
chrX:40183557-40183153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 5
               

               
Conread position:
               
92-490
               

               
Cow position:
               
chrX:48236603-48237017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
39, 285
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:4996403-4996792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
273, 32
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:5638378-5637976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 97
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:6544048-6544448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:8899816-8900222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
39, 265
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:12290527-12290921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
40, 101
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:12309598-12309182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 111
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:15485836-15485430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 60
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:15596829-15597231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
39, 160
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:17794777-17795183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:21064078-21064485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
124, 42
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:21642687-21642278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:21663101-21663498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:27509228-27508821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
39, 58
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:30963080-30962672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:31949139-31948731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:32020330-32019930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:34411631-34412051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 115
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:34441659-34441250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:34454461-34454862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 49
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:34543579-34543989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 58
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:35542683-35543087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 184
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:41122863-41123248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
39, 63
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:44054592-44055006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
6, 60
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:45110447-45110854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
43, 69
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:45430225-45429827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
46, 89
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chrX:46532718-46532287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 137
               

               
Conread position:
               
93-277
               

               
Cow position:
               
chrX:12249599-12249778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 59
               

               
Conread position:
               
93-285
               

               
Cow position:
               
chrX:35273144-35273339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
27, 151
               

               
Conread position:
               
93-290
               

               
Cow position:
               
chrX:11455260-11455058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
93-292
               

               
Cow position:
               
chrX:26285772-26285970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
93-293
               

               
Cow position:
               
chrX:2029182-2029383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
93-294
               

               
Cow position:
               
chrX:43408790-43408999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 59
               

               
Conread position:
               
93-331
               

               
Cow position:
               
chrX:43049137-43049384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
93-360
               

               
Cow position:
               
chrX:26876089-26875811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
42, 19
               

               
Conread position:
               
93-372
               

               
Cow position:
               
chrX:29876274-29875995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
41, 73
               

               
Conread position:
               
93-431
               

               
Cow position:
               
chrX:7695552-7695887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
38, 57
               

               
Conread position:
               
93-450
               

               
Cow position:
               
chrX:24424595-24424245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 86
               

               
Conread position:
               
93-485
               

               
Cow position:
               
chrX:7351092-7351500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
93-485
               

               
Cow position:
               
chrX:31443029-31442643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 55
               

               
Conread position:
               
93-490
               

               
Cow position:
               
chrX:38935074-38935480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 252
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chrX:3579737-3580148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
42, 58
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chrX:32420011-32420414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
38, 62
               

               
Conread position:
               
93-492
               

               
Cow position:
               
chrX:44396807-44397214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 128
               

               
Conread position:
               
96-292
               

               
Cow position:
               
chrX:38439269-38439469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
96-299
               

               
Cow position:
               
chrX:39938727-39938525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
39, 83
               

               
Conread position:
               
96-306
               

               
Cow position:
               
chrX:35409461-35409667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
96-307
               

               
Cow position:
               
chrX:41167169-41166959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
96-350
               

               
Cow position:
               
chrX:19188732-19188991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
35, 90
               

               
Conread position:
               
96-381
               

               
Cow position:
               
chrX:630512-630218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
96-383
               

               
Cow position:
               
chrX:841954-842250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
39, 54
               

               
Conread position:
               
96-451
               

               
Cow position:
               
chrX:34401793-34402163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 50
               

               
Conread position:
               
96-479
               

               
Cow position:
               
chrX:9635385-9634999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
96-485
               

               
Cow position:
               
chrX:33466409-33466821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
36, 54
               

               
Conread position:
               
96-490
               

               
Cow position:
               
chrX:36975745-36976153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
96-492
               

               
Cow position:
               
chrX:24317857-24318269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
53, 242
               

               
Conread position:
               
96-492
               

               
Cow position:
               
chrX:25035592-25035178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
39, 308
               

               
Conread position:
               
97-306
               

               
Cow position:
               
chrX:17908487-17908282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
97-479
               

               
Cow position:
               
chrX:29545083-29544692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 304
               

               
Conread position:
               
97-492
               

               
Cow position:
               
chrX:41526727-41526331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
39, 151
               

               
Conread position:
               
98-259
               

               
Cow position:
               
chrX:29770381-29770215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
98-281
               

               
Cow position:
               
chrX:25411634-25411821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
98-294
               

               
Cow position:
               
chrX:1055592-1055401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
38, 53
               

               
Conread position:
               
98-428
               

               
Cow position:
               
chrX:29120854-29121183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
98-456
               

               
Cow position:
               
chrX:41192482-41192866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 329
               

               
Conread position:
               
98-477
               

               
Cow position:
               
chrX:4750503-4750148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
319, 34
               

               
Conread position:
               
98-481
               

               
Cow position:
               
chrX:16996305-16996685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 7
               

               
Conread position:
               
98-485
               

               
Cow position:
               
chrX:22482891-22482493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 84
               

               
Conread position:
               
98-490
               

               
Cow position:
               
chrX:15545692-15546082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 53
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chrX:1176185-1175787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
37, 286
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chrX:31250187-31250593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
41, 96
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chrX:37781320-37780909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 310
               

               
Conread position:
               
98-492
               

               
Cow position:
               
chrX:41238568-41238159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
34, 161
               

               
Conread position:
               
100-300
               

               
Cow position:
               
chrX:18999688-18999889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 57
               

               
Conread position:
               
101-337
               

               
Cow position:
               
chrX:36961436-36961688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
102-383
               

               
Cow position:
               
chrX:40809488-40809786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
103-299
               

               
Cow position:
               
chrX:34270209-34270399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
103-330
               

               
Cow position:
               
chrX:4091450-4091680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
33, 52
               

               
Conread position:
               
103-380
               

               
Cow position:
               
chrX:12405574-12405291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
103-383
               

               
Cow position:
               
chrX:45148977-45149261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 188
               

               
Conread position:
               
103-394
               

               
Cow position:
               
chrX:43780050-43779743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 102
               

               
Conread position:
               
103-405
               

               
Cow position:
               
chrX:10959598-10959282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
35, 309
               

               
Conread position:
               
103-429
               

               
Cow position:
               
chrX:917569-917231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 129
               

               
Conread position:
               
103-448
               

               
Cow position:
               
chrX:27772157-27771814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
172, 47
               

               
Conread position:
               
103-450
               

               
Cow position:
               
chrX:41879132-41878776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
103-458
               

               
Cow position:
               
chrX:17725777-17726142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 48
               

               
Conread position:
               
103-492
               

               
Cow position:
               
chrX:1499472-1499857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
103-492
               

               
Cow position:
               
chrX:10252379-10251999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
103-492
               

               
Cow position:
               
chrX:11844440-11844037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
111, 34
               

               
Conread position:
               
103-492
               

               
Cow position:
               
chrX:38218509-38218916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 115
               

               
Conread position:
               
104-492
               

               
Cow position:
               
chrX:9201350-9201746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 51
               

               
Conread position:
               
105-300
               

               
Cow position:
               
chrX:30833041-30832850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
105-492
               

               
Cow position:
               
chrX:7863768-7863377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 70
               

               
Conread position:
               
105-492
               

               
Cow position:
               
chrX:47484467-47484059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
30, 300
               

               
Conread position:
               
106-414
               

               
Cow position:
               
chrX:47144893-47145209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
106-416
               

               
Cow position:
               
chrX:7513320-7513611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
26, 45
               

               
Conread position:
               
106-418
               

               
Cow position:
               
chrX:11939121-11938807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 49
               

               
Conread position:
               
107-244
               

               
Cow position:
               
chrX:18812061-18812196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
108-292
               

               
Cow position:
               
chrX:8991695-8991876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 47
               

               
Conread position:
               
108-306
               

               
Cow position:
               
chrX:45874806-45875004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
27, 43
               

               
Conread position:
               
108-490
               

               
Cow position:
               
chrX:8869601-8869203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 112
               

               
Conread position:
               
110-412
               

               
Cow position:
               
chrX:47362802-47362503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
22, 68
               

               
Conread position:
               
110-447
               

               
Cow position:
               
chrX:31311835-31312182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 148
               

               
Conread position:
               
110-451
               

               
Cow position:
               
chrX:23785463-23785805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
25, 160
               

               
Conread position:
               
110-492
               

               
Cow position:
               
chrX:11633488-11633885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
25, 41
               

               
Conread position:
               
111-257
               

               
Cow position:
               
chrX:24149450-24149597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
111-307
               

               
Cow position:
               
chrX:1505523-1505714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
101, 39
               

               
Conread position:
               
111-492
               

               
Cow position:
               
chrX:47280121-47279733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
112-434
               

               
Cow position:
               
chrX:42235722-42235382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
23, 304
               

               
Conread position:
               
114-295
               

               
Cow position:
               
chrX:31256681-31256860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 35
               

               
Conread position:
               
115-490
               

               
Cow position:
               
chrX:34376761-34377140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 10
               

               
Conread position:
               
115-492
               

               
Cow position:
               
chrX:35383205-35382839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
16, 133
               

               
Conread position:
               
116-451
               

               
Cow position:
               
chrX:36067835-36068176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
15, 35
               

               
Conread position:
               
118-285
               

               
Cow position:
               
chrX:45759215-45759376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 33
               

               
Conread position:
               
118-299
               

               
Cow position:
               
chrX:14003828-14003642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
118-492
               

               
Cow position:
               
chrX:32820847-32821243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
93, 32
               

               
Conread position:
               
119-292
               

               
Cow position:
               
chrX:7336645-7336819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
127-336
               

               
Cow position:
               
chrX:23341141-23340931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
8, 130
               

               
Conread position:
               
127-383
               

               
Cow position:
               
chrX:18897829-18897558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 159
               

               
Conread position:
               
127-443
               

               
Cow position:
               
chrX:22387421-22387099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
8, 218
               

               
Conread position:
               
128-299
               

               
Cow position:
               
chrX:16289734-16289558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
128-451
               

               
Cow position:
               
chrX:46433310-46433647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
7, 286
               

               
Conread position:
               
128-488
               

               
Cow position:
               
chrX:14275907-14275549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
130-306
               

               
Cow position:
               
chrX:48044369-48044193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
22, 135
               

               
Conread position:
               
130-383
               

               
Cow position:
               
chrX:22921144-22921414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
130-451
               

               
Cow position:
               
chrX:47166054-47165728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 44
               

               
Conread position:
               
130-479
               

               
Cow position:
               
chrX:31252248-31252598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
177, 21
               

               
Conread position:
               
130-485
               

               
Cow position:
               
chrX:34792480-34792124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 61
               

               
Conread position:
               
130-490
               

               
Cow position:
               
chrX:14955937-14955567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
21, 150
               

               
Conread position:
               
130-492
               

               
Cow position:
               
chrX:4398956-4399321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
19, 195
               

               
Conread position:
               
130-492
               

               
Cow position:
               
chrX:25208016-25207658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
22, 150
               

               
Conread position:
               
130-492
               

               
Cow position:
               
chrX:35885899-35885529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
86, 20
               

               
Conread position:
               
131-490
               

               
Cow position:
               
chrX:27145455-27145800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
133-279
               

               
Cow position:
               
chrX:10128838-10128987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
133-485
               

               
Cow position:
               
chrX:4279281-4278921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
133-492
               

               
Cow position:
               
chrX:6407382-6407747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
16, 58
               

               
Conread position:
               
133-492
               

               
Cow position:
               
chrX:8917226-8917598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
19, 266
               

               
Conread position:
               
136-481
               

               
Cow position:
               
chrX:27206636-27206989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
103, 14
               

               
Conread position:
               
150-338
               

               
Cow position:
               
chrX:18515253-18515444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
150-377
               

               
Cow position:
               
chrX:48385511-48385276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
62, 194
               

               
Conread position:
               
150-492
               

               
Cow position:
               
chrX:20584171-20584515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 264
               

               
Conread position:
               
154-386
               

               
Cow position:
               
chrX:27685100-27685345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
154-492
               

               
Cow position:
               
chrX:34313886-34314224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 42
               

               
Conread position:
               
155-448
               

               
Cow position:
               
chrX:42873247-42873539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
55, 7
               

               
Conread position:
               
157-293
               

               
Cow position:
               
chrX:10366370-10366234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
157-363
               

               
Cow position:
               
chrX:13785507-13785287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
157-418
               

               
Cow position:
               
chrX:38066594-38066329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
94, 246
               

               
Conread position:
               
157-442
               

               
Cow position:
               
chrX:39415510-39415220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 19
               

               
Conread position:
               
157-451
               

               
Cow position:
               
chrX:11085201-11084906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
58, 226
               

               
Conread position:
               
157-451
               

               
Cow position:
               
chrX:29680404-29680101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
128, 241
               

               
Conread position:
               
157-485
               

               
Cow position:
               
chrX:5919352-5919688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
130, 80
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chrX:5118646-5118295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 113
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chrX:21986436-21986098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
133, 181
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chrX:27227979-27228332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
60, 255
               

               
Conread position:
               
157-492
               

               
Cow position:
               
chrX:29723597-29723954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
55, 262
               

               
Conread position:
               
160-451
               

               
Cow position:
               
chrX:9365815-9365519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
132, 14
               

               
Conread position:
               
162-451
               

               
Cow position:
               
chrX:616401-616101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 248
               

               
Conread position:
               
162-485
               

               
Cow position:
               
chrX:18204602-18204267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
56, 237
               

               
Conread position:
               
164-490
               

               
Cow position:
               
chrX:41027020-41027361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
131, 51
               

               
Conread position:
               
166-431
               

               
Cow position:
               
chrX:37986098-37986364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
127, 72
               

               
Conread position:
               
166-492
               

               
Cow position:
               
chrX:41870938-41871260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
95, 236
               

               
Conread position:
               
169-492
               

               
Cow position:
               
chrX:40685463-40685126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 241
               

               
Conread position:
               
170-418
               

               
Cow position:
               
chrX:19273854-19273581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
21, 253
               

               
Conread position:
               
170-480
               

               
Cow position:
               
chrX:45976789-45977116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 235
               

               
Conread position:
               
176-371
               

               
Cow position:
               
chrX:19003175-19003374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 178
               

               
Conread position:
               
176-434
               

               
Cow position:
               
chrX:38728612-38728876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
41, 220
               

               
Conread position:
               
176-478
               

               
Cow position:
               
chrX:43115026-43115338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 182
               

               
Conread position:
               
176-490
               

               
Cow position:
               
chrX:34505172-34504852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 74
               

               
Conread position:
               
178-492
               

               
Cow position:
               
chrX:18111267-18111582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
38, 55
               

               
Conread position:
               
181-492
               

               
Cow position:
               
chrX:26881688-26881359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 229
               

               
Conread position:
               
184-480
               

               
Cow position:
               
chrX:4515567-4515879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
20, 42
               

               
Conread position:
               
185-490
               

               
Cow position:
               
chrX:46291023-46291342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
93, 14
               

               
Conread position:
               
186-492
               

               
Cow position:
               
chrX:29229894-29230210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 212
               

               
Conread position:
               
188-354
               

               
Cow position:
               
chrX:20790808-20790977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
98, 137
               

               
Conread position:
               
188-426
               

               
Cow position:
               
chrX:33539052-33539304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 225
               

               
Conread position:
               
188-492
               

               
Cow position:
               
chrX:42927932-42927627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 207
               

               
Conread position:
               
190-492
               

               
Cow position:
               
chrX:17949601-17949289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
26, 259
               

               
Conread position:
               
205-418
               

               
Cow position:
               
chrX:11851765-11851553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
146, 92
               

               
Conread position:
               
205-485
               

               
Cow position:
               
chrX:34837150-34836875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 35
               

               
Conread position:
               
205-492
               

               
Cow position:
               
chrX:12095870-12095568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
12, 196
               

               
Conread position:
               
207-485
               

               
Cow position:
               
chrX:47345240-47345526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
83, 194
               

               
Conread position:
               
209-490
               

               
Cow position:
               
chrX:1466069-1466364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
90, 193
               

               
Conread position:
               
209-492
               

               
Cow position:
               
chrX:33654933-33654640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 187
               

               
Conread position:
               
210-492
               

               
Cow position:
               
chrX:29050156-29050445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
88, 154
               

               
Conread position:
               
215-490
               

               
Cow position:
               
chrX:4296905-4296623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
77, 177
               

               
Conread position:
               
220-451
               

               
Cow position:
               
chrX:18273139-18272902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 149
               

               
Conread position:
               
220-472
               

               
Cow position:
               
chrX:16575042-16575296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
209, 167
               

               
Conread position:
               
222-492
               

               
Cow position:
               
chrX:22115396-22115111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
12, 185
               

               
Conread position:
               
228-492
               

               
Cow position:
               
chrX:1088209-1087945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
39, 129
               

               
Conread position:
               
231-492
               

               
Cow position:
               
chrX:4153105-4152841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
65, 181
               

               
Conread position:
               
233-492
               

               
Cow position:
               
chrX:7648469-7648209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
54, 157
               

               
Conread position:
               
236-431
               

               
Cow position:
               
chrX:46429885-46429680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
60, 6
               

               
Conread position:
               
240-490
               

               
Cow position:
               
chrX:20957187-20957440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 158
               

               
Conread position:
               
244-492
               

               
Cow position:
               
chrX:19469563-19469312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
46, 156
               

               
Conread position:
               
247-485
               

               
Cow position:
               
chrX:35985764-35986016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
248-423
               

               
Cow position:
               
chrX:25328659-25328485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 79
               

               
Conread position:
               
272-490
               

               
Cow position:
               
chrX:32208840-32208626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
178, 109
               

               
Conread position:
               
275-492
               

               
Cow position:
               
chrX:28940219-28940447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
282-492
               

               
Cow position:
               
chrX:27075059-27074848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
153, 114
               

               
Conread position:
               
284-492
               

               
Cow position:
               
chrX:39290353-39290558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
145, 105
               

               
Conread position:
               
286-492
               

               
Cow position:
               
chrX:2935953-2936156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
286-492
               

               
Cow position:
               
chrX:22392988-22392785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
146, 110
               

               
Conread position:
               
287-479
               

               
Cow position:
               
chrX:169548-169351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
146, 54
               

               
Conread position:
               
287-488
               

               
Cow position:
               
chrX:38587846-38587643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
145, 109
               

               
Conread position:
               
287-492
               

               
Cow position:
               
chrX:3806679-3806881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
124, 101
               

               
Conread position:
               
287-492
               

               
Cow position:
               
chrX:4466964-4467154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
287-492
               

               
Cow position:
               
chrX:11326101-11325905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
14, 111
               

               
Conread position:
               
287-492
               

               
Cow position:
               
chrX:27306451-27306642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
288-418
               

               
Cow position:
               
chrX:12082325-12082198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
288-450
               

               
Cow position:
               
chrX:40532045-40531887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
123, 111
               

               
Conread position:
               
288-491
               

               
Cow position:
               
chrX:42479831-42480030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
195, 109
               

               
Conread position:
               
288-492
               

               
Cow position:
               
chrX:16984639-16984838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
289-463
               

               
Cow position:
               
chrX:6599783-6599609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
140, 108
               

               
Conread position:
               
290-434
               

               
Cow position:
               
chrX:29501881-29501742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
290-492
               

               
Cow position:
               
chrX:19394553-19394758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
128, 107
               

               
Conread position:
               
290-492
               

               
Cow position:
               
chrX:27668958-27668759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
291-492
               

               
Cow position:
               
chrX:12972682-12972881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
303-490
               

               
Cow position:
               
chrX:29467765-29467581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
125, 85
               

               
Conread position:
               
303-492
               

               
Cow position:
               
chrX:16836273-16836091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
304-491
               

               
Cow position:
               
chrX:42450000-42449811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
125, 84
               

               
Conread position:
               
306-485
               

               
Cow position:
               
chrX:20583682-20583859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
147, 91
               

               
Conread position:
               
306-491
               

               
Cow position:
               
chrX:47079643-47079830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
124, 91
               

               
Conread position:
               
306-492
               

               
Cow position:
               
chrX:31479987-31480169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
121, 60
               

               
Conread position:
               
309-491
               

               
Cow position:
               
chrX:5026275-5026453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
176, 80
               

               
Conread position:
               
315-492
               

               
Cow position:
               
chrX:32866900-32867073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
320-492
               

               
Cow position:
               
chrX:23359081-23358914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
109, 35
               

               
Conread position:
               
320-492
               

               
Cow position:
               
chrX:41453332-41453502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
321-486
               

               
Cow position:
               
chrX:29688144-29687978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
107, 75
               

               
Conread position:
               
325-492
               

               
Cow position:
               
chrX:34991399-34991564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
124, 68
               

               
Conread position:
               
327-492
               

               
Cow position:
               
chrX:6480559-6480392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
20, 9
               
Show alignments to all cow chromosomes.