Cow genome map

Conread name: Ss1.1-rlyg14_j16.5

Conread position: 1-371
Cow position:
Alignm length: 376
Alignm identity: 240
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 18, 55

Conread position: 1-372
Cow position:
Alignm length: 377
Alignm identity: 234
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 18, 13

Conread position: 1-416
Cow position:
Alignm length: 420
Alignm identity: 270
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 8, 144

Conread position: 1-416
Cow position:
Alignm length: 421
Alignm identity: 263
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 19, 13

Conread position: 7-380
Cow position:
Alignm length: 375
Alignm identity: 232
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 302, 285

Conread position: 12-407
Cow position:
Alignm length: 396
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 406
Alignm identity: 253
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 60, 54

Conread position: 12-417
Cow position:
Alignm length: 407
Alignm identity: 253
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 211, 200

Conread position: 12-453
Cow position:
Alignm length: 445
Alignm identity: 271
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 41, 24

Conread position: 13-369
Cow position:
Alignm length: 361
Alignm identity: 223
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 59, 53

Conread position: 13-380
Cow position:
Alignm length: 372
Alignm identity: 241
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 30, 42

Conread position: 13-402
Cow position:
Alignm length: 390
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-407
Cow position:
Alignm length: 396
Alignm identity: 253
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 288, 278

Conread position: 13-415
Cow position:
Alignm length: 403
Alignm identity: 244
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 115, 0

Conread position: 13-416
Cow position:
Alignm length: 409
Alignm identity: 260
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 30, 22

Conread position: 13-416
Cow position:
Alignm length: 405
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 369

Conread position: 13-424
Cow position:
Alignm length: 412
Alignm identity: 247
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 14-377
Cow position:
Alignm length: 365
Alignm identity: 244
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 36, 24

Conread position: 14-401
Cow position:
Alignm length: 390
Alignm identity: 254
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 287, 276

Conread position: 14-416
Cow position:
Alignm length: 404
Alignm identity: 261
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 273, 281

Conread position: 14-420
Cow position:
Alignm length: 408
Alignm identity: 244
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 39, 45

Conread position: 15-371
Cow position:
Alignm length: 359
Alignm identity: 230
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 71, 51

Conread position: 15-372
Cow position:
Alignm length: 360
Alignm identity: 231
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 38, 44

Conread position: 15-381
Cow position:
Alignm length: 367
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 15-407
Cow position:
Alignm length: 394
Alignm identity: 256
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 380, 368

Conread position: 15-416
Cow position:
Alignm length: 406
Alignm identity: 253
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 28, 37

Conread position: 15-416
Cow position:
Alignm length: 404
Alignm identity: 264
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 279, 86

Conread position: 15-416
Cow position:
Alignm length: 403
Alignm identity: 253
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 107, 116

Conread position: 15-416
Cow position:
Alignm length: 402
Alignm identity: 256
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 15-416
Cow position:
Alignm length: 403
Alignm identity: 257
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 379, 367

Conread position: 15-416
Cow position:
Alignm length: 404
Alignm identity: 248
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 76, 66

Conread position: 15-420
Cow position:
Alignm length: 411
Alignm identity: 255
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 27

Conread position: 15-420
Cow position:
Alignm length: 410
Alignm identity: 256
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 71, 51

Conread position: 15-425
Cow position:
Alignm length: 413
Alignm identity: 264
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 57, 51

Conread position: 16-203
Cow position:
Alignm length: 189
Alignm identity: 128
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 43, 37

Conread position: 16-243
Cow position:
Alignm length: 228
Alignm identity: 153
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 16-255
Cow position:
Alignm length: 241
Alignm identity: 154
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 109, 113

Conread position: 16-269
Cow position:
Alignm length: 255
Alignm identity: 178
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 70, 243

Conread position: 16-335
Cow position:
Alignm length: 321
Alignm identity: 207
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 291, 283

Conread position: 16-340
Cow position:
Alignm length: 327
Alignm identity: 204
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 56, 49

Conread position: 16-368
Cow position:
Alignm length: 354
Alignm identity: 231
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 33, 28

Conread position: 16-369
Cow position:
Alignm length: 355
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 37

Conread position: 16-370
Cow position:
Alignm length: 355
Alignm identity: 228
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 16-371
Cow position:
Alignm length: 358
Alignm identity: 224
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 44, 25

Conread position: 16-371
Cow position:
Alignm length: 358
Alignm identity: 223
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 43

Conread position: 16-380
Cow position:
Alignm length: 365
Alignm identity: 228
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 16-381
Cow position:
Alignm length: 367
Alignm identity: 228
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 115, 126

Conread position: 16-381
Cow position:
Alignm length: 371
Alignm identity: 251
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 36, 42

Conread position: 16-382
Cow position:
Alignm length: 367
Alignm identity: 230
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 16-407
Cow position:
Alignm length: 393
Alignm identity: 254
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 111, 127

Conread position: 16-413
Cow position:
Alignm length: 398
Alignm identity: 246
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 403
Alignm identity: 248
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 43, 38

Conread position: 16-416
Cow position:
Alignm length: 403
Alignm identity: 261
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 110, 117

Conread position: 16-416
Cow position:
Alignm length: 403
Alignm identity: 245
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 26

Conread position: 16-416
Cow position:
Alignm length: 404
Alignm identity: 265
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 114, 127

Conread position: 16-416
Cow position:
Alignm length: 403
Alignm identity: 256
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 120, 126

Conread position: 16-416
Cow position:
Alignm length: 402
Alignm identity: 258
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 44, 37

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 255
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 402
Alignm identity: 248
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 363, 370

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 243
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 405
Alignm identity: 253
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 120, 127

Conread position: 16-416
Cow position:
Alignm length: 402
Alignm identity: 244
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 363, 370

Conread position: 16-417
Cow position:
Alignm length: 404
Alignm identity: 259
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 41, 28

Conread position: 16-421
Cow position:
Alignm length: 408
Alignm identity: 254
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 55, 37

Conread position: 16-425
Cow position:
Alignm length: 411
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 20

Conread position: 16-425
Cow position:
Alignm length: 411
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 22

Conread position: 16-425
Cow position:
Alignm length: 411
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 16-432
Cow position:
Alignm length: 419
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 106

Conread position: 16-446
Cow position:
Alignm length: 433
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 28

Conread position: 16-448
Cow position:
Alignm length: 435
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 107

Conread position: 16-453
Cow position:
Alignm length: 441
Alignm identity: 280
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 32, 23

Conread position: 17-416
Cow position:
Alignm length: 403
Alignm identity: 247
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 29, 24

Conread position: 17-420
Cow position:
Alignm length: 407
Alignm identity: 262
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 42, 36

Conread position: 18-401
Cow position:
Alignm length: 386
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 105

Conread position: 18-416
Cow position:
Alignm length: 401
Alignm identity: 248
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 24, 41

Conread position: 18-417
Cow position:
Alignm length: 401
Alignm identity: 243
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 292, 287

Conread position: 19-285
Cow position:
Alignm length: 268
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 114, 123

Conread position: 19-340
Cow position:
Alignm length: 325
Alignm identity: 204
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 52, 47

Conread position: 19-370
Cow position:
Alignm length: 354
Alignm identity: 232
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 31, 25

Conread position: 19-370
Cow position:
Alignm length: 354
Alignm identity: 215
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 59, 48

Conread position: 19-386
Cow position:
Alignm length: 368
Alignm identity: 237
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 19-400
Cow position:
Alignm length: 384
Alignm identity: 243
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 37, 25

Conread position: 19-413
Cow position:
Alignm length: 395
Alignm identity: 234
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 19-416
Cow position:
Alignm length: 401
Alignm identity: 243
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 107, 119

Conread position: 19-416
Cow position:
Alignm length: 398
Alignm identity: 240
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 19-416
Cow position:
Alignm length: 400
Alignm identity: 246
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 276, 257

Conread position: 19-416
Cow position:
Alignm length: 401
Alignm identity: 246
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 35

Conread position: 19-417
Cow position:
Alignm length: 399
Alignm identity: 239
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 19-417
Cow position:
Alignm length: 401
Alignm identity: 250
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 108, 124

Conread position: 19-417
Cow position:
Alignm length: 402
Alignm identity: 245
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 40, 28

Conread position: 19-420
Cow position:
Alignm length: 404
Alignm identity: 259
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 117, 123

Conread position: 19-425
Cow position:
Alignm length: 410
Alignm identity: 261
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 235, 283

Conread position: 23-416
Cow position:
Alignm length: 406
Alignm identity: 266
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 18, 28

Conread position: 25-413
Cow position:
Alignm length: 389
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 43-413
Cow position:
Alignm length: 373
Alignm identity: 236
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 180, 160

Conread position: 49-413
Cow position:
Alignm length: 366
Alignm identity: 238
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 160, 153

Conread position: 49-416
Cow position:
Alignm length: 368
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 58-381
Cow position:
Alignm length: 324
Alignm identity: 204
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 58-416
Cow position:
Alignm length: 359
Alignm identity: 225
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 106, 0

Conread position: 58-416
Cow position:
Alignm length: 360
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 316

Conread position: 58-425
Cow position:
Alignm length: 370
Alignm identity: 230
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 68, 84

Conread position: 59-416
Cow position:
Alignm length: 359
Alignm identity: 217
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 252, 234

Conread position: 69-381
Cow position:
Alignm length: 314
Alignm identity: 195
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 68, 48

Conread position: 74-416
Cow position:
Alignm length: 344
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 302, 306

Conread position: 76-417
Cow position:
Alignm length: 344
Alignm identity: 217
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 156, 163

Conread position: 84-425
Cow position:
Alignm length: 342
Alignm identity: 215
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 333, 0

Conread position: 102-374
Cow position:
Alignm length: 273
Alignm identity: 168
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 122-416
Cow position:
Alignm length: 297
Alignm identity: 188
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 16, 21

Conread position: 137-416
Cow position:
Alignm length: 280
Alignm identity: 180
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 137-433
Cow position:
Alignm length: 301
Alignm identity: 199
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 16, 5

Conread position: 139-407
Cow position:
Alignm length: 271
Alignm identity: 185
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 67, 73

Conread position: 141-417
Cow position:
Alignm length: 279
Alignm identity: 179
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 262, 9

Conread position: 232-407
Cow position:
Alignm length: 176
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.