Cow genome map
| Conread name: | Ss1.1-rlyg14_j16.5 |
| Conread position: | 1-380 |
| Cow position: | chr17:22473258-22473637 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 371 |
| Conread position: | 12-248 |
| Cow position: | chr17:22589411-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 34 |
| Conread position: | 12-312 |
| Cow position: | chr17:22589495-22589195 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 12-349 |
| Cow position: | chr17:22498872-22498535 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr17:22452278-22451874 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 12-416 |
| Cow position: | chr17:22552917-22552513 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 293 |
| Conread position: | 12-420 |
| Cow position: | chr17:22499124-22498716 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 12-420 |
| Cow position: | chr17:22552581-22552173 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 293 |
| Conread position: | 12-426 |
| Cow position: | chr17:22473521-22473935 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 47, 42 |
| Conread position: | 12-448 |
| Cow position: | chr17:22473437-22473874 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 197 |
| Conread position: | 13-347 |
| Cow position: | chr17:22551824-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-371 |
| Cow position: | chr17:22589914-22589556 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 13-397 |
| Cow position: | chr17:22589578-22589194 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 13-416 |
| Cow position: | chr17:22452109-22451706 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 13-416 |
| Cow position: | chr17:22552076-22551673 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-416 |
| Cow position: | chr17:22552496-22552093 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-420 |
| Cow position: | chr17:22552664-22552257 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-420 |
| Cow position: | chr17:22589746-22589339 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 130 |
| Conread position: | 13-425 |
| Cow position: | chr17:22551992-22551581 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 273 |
| Conread position: | 13-425 |
| Cow position: | chr17:22552244-22551833 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 0 |
| Conread position: | 13-425 |
| Cow position: | chr17:22553084-22552673 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 374 |
| Conread position: | 13-425 |
| Cow position: | chr17:22589998-22589587 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 357 |
| Conread position: | 13-428 |
| Cow position: | chr17:22552160-22551745 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 13-431 |
| Cow position: | chr17:22589662-22589245 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 269 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 112, 102 |
| Conread position: | 13-445 |
| Cow position: | chr17:22589830-22589397 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 413, 0 |
| Conread position: | 14-416 |
| Cow position: | chr17:22552831-22552429 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 42 |
| Conread position: | 14-445 |
| Cow position: | chr17:22552999-22552567 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 0 |
| Conread position: | 15-274 |
| Cow position: | chr17:22451939-22451680 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 15-401 |
| Cow position: | chr17:22498953-22498567 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 15-425 |
| Cow position: | chr17:22499373-22498964 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 280 |
| Conread position: | 15-425 |
| Cow position: | chr17:22552746-22552336 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 353, 376 |
| Conread position: | 15-436 |
| Cow position: | chr17:22452191-22451769 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 16-273 |
| Cow position: | chr17:22551737-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-365 |
| Cow position: | chr17:22452022-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 38, 43 |
| Conread position: | 16-408 |
| Cow position: | chr17:22499288-22498896 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-415 |
| Cow position: | chr17:22590247-22589848 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 113 |
| Conread position: | 16-416 |
| Cow position: | chr17:22452358-22451958 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 374, 378 |
| Conread position: | 16-417 |
| Cow position: | chr17:22499204-22498803 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 195, 189 |
| Conread position: | 16-425 |
| Cow position: | chr17:22590079-22589671 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 275 |
| Conread position: | 16-448 |
| Cow position: | chr17:22473357-22473790 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 189 |
| Conread position: | 17-372 |
| Cow position: | chr17:22590162-22589807 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-416 |
| Cow position: | chr17:22499035-22498636 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 19-425 |
| Cow position: | chr17:22552406-22552001 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 19-445 |
| Cow position: | chr17:22552322-22551895 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 0 |
| Conread position: | 48-407 |
| Cow position: | chr17:22499424-22499065 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 49-421 |
| Cow position: | chr17:22551872-22551501 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 58-414 |
| Cow position: | chr17:22452400-22452044 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 83, 63 |
| Conread position: | 58-415 |
| Cow position: | chr17:22590289-22589932 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 239, 230 |
| Conread position: | 59-416 |
| Cow position: | chr17:22553122-22552765 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 115 |
| Conread position: | 105-416 |
| Cow position: | chr17:22452522-22452210 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 255 |
| Conread position: | 109-445 |
| Cow position: | chr17:22473201-22473535 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 318, 66 |
| Conread position: | 132-415 |
| Cow position: | chr17:22452410-22452127 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-415 |
| Cow position: | chr17:22590291-22590016 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 157, 152 |
| Conread position: | 163-416 |
| Cow position: | chr17:22499393-22499140 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.