Cow genome map


           Conread name:
           Ss1.1-rlyg14_j16.5
        

               Conread position:
               12-342
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               209
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               26, 30
               

               Conread position:
               12-368
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               216
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               12-368
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 38
               

               Conread position:
               12-372
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-400
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               261
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               22, 48
               

               Conread position:
               12-401
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 104
               

               Conread position:
               12-407
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 125
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               262
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               45, 32
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 42
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 283
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 24
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 25
               

               Conread position:
               12-416
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 30
               

               Conread position:
               12-420
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 131
               

               Conread position:
               12-420
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               12-420
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               267
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               198, 192
               

               Conread position:
               12-425
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               382, 134
               

               Conread position:
               12-425
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 195
               

               Conread position:
               12-433
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 23
               

               Conread position:
               13-340
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               220
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               282, 273
               

               Conread position:
               13-370
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               236
               

               Alignm E-value:
               8.00141e-43
               

               Alignm gaps (pig, cow):
               33, 24
               

               Conread position:
               13-372
               

               Cow position:
               
               

               Alignm length:
               363
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               109, 116
               

               Conread position:
               13-377
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               282, 276
               

               Conread position:
               13-416
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               13-417
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               13-433
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               405, 243
               

               Conread position:
               15-285
               

               Cow position:
               
               

               Alignm length:
               271
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-349
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               106, 94
               

               Conread position:
               15-416
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-416
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               263
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               23, 28
               

               Conread position:
               15-416
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 47
               

               Conread position:
               15-416
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               258
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-416
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               15-425
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               260
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               260, 146
               

               Conread position:
               15-425
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               398, 0
               

               Conread position:
               15-425
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 110
               

               Conread position:
               16-208
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               16-342
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               127, 116
               

               Conread position:
               16-368
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               30, 20
               

               Conread position:
               16-369
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               34, 21
               

               Conread position:
               16-370
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               231
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               48, 21
               

               Conread position:
               16-371
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               109, 113
               

               Conread position:
               16-371
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               232
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               42, 22
               

               Conread position:
               16-371
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               231
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               43, 38
               

               Conread position:
               16-371
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 100
               

               Conread position:
               16-400
               

               Cow position:
               
               

               Alignm length:
               388
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 127
               

               Conread position:
               16-401
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               376, 366
               

               Conread position:
               16-407
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               16-413
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               357, 302
               

               Conread position:
               16-413
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               16-416
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 270
               

               Conread position:
               16-416
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               16-416
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 0
               

               Conread position:
               16-416
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               291, 274
               

               Conread position:
               16-416
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               271, 286
               

               Conread position:
               16-417
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 113
               

               Conread position:
               16-417
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               263
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               130, 105
               

               Conread position:
               16-417
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               16-420
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               16-420
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               262
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               379, 367
               

               Conread position:
               16-420
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               16-428
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 23
               

               Conread position:
               16-436
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               273
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               409, 181
               

               Conread position:
               16-447
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               410, 0
               

               Conread position:
               16-448
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 123
               

               Conread position:
               16-448
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 69
               

               Conread position:
               17-368
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               312, 0
               

               Conread position:
               18-336
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               18-416
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               19-371
               

               Cow position:
               
               

               Alignm length:
               355
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 117
               

               Conread position:
               19-377
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               19-414
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               19-416
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 13
               

               Conread position:
               19-416
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               19-425
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               400, 0
               

               Conread position:
               19-431
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               265
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               40, 35
               

               Conread position:
               21-448
               

               Cow position:
               
               

               Alignm length:
               430
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 41
               

               Conread position:
               25-416
               

               Cow position:
               
               

               Alignm length:
               395
               

               Alignm identity:
               245
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               21, 11
               

               Conread position:
               36-333
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               46-398
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               283, 120
               

               Conread position:
               49-337
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               193
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               258, 245
               

               Conread position:
               58-416
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               243
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               62, 71
               

               Conread position:
               58-417
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 231
               

               Conread position:
               63-425
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               239
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               309, 317
               

               Conread position:
               76-416
               

               Cow position:
               
               

               Alignm length:
               344
               

               Alignm identity:
               225
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               63, 67
               

               Conread position:
               84-416
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               302, 295
               

               Conread position:
               89-416
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               32, 55
               

               Conread position:
               142-416
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               187
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               147-374
               

               Cow position:
               
               

               Alignm length:
               228
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               150-425
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               14, 264
               

               Conread position:
               161-425
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               162, 16
               
Show alignments to all cow chromosomes.