Cow genome map

Conread name: Ss1.1-rlyg14_j16.5

Conread position: 12-342
Cow position: chr19:20635277-20634950 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 209
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 26, 30

Conread position: 12-368
Cow position: chr19:14916067-14916418 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 216
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 12-368
Cow position: chr19:23614040-23614396 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 38

Conread position: 12-372
Cow position: chr19:20635529-20635169 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-400
Cow position: chr19:43570445-43570068 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 261
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 22, 48

Conread position: 12-401
Cow position: chr19:23614712-23615101 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 104

Conread position: 12-407
Cow position: chr19:43570036-43569645 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 125

Conread position: 12-416
Cow position: chr19:14940344-14940748 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position: chr19:14940596-14941000 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 262
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 45, 32

Conread position: 12-416
Cow position: chr19:23613368-23613772 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position: chr19:23613452-23613856 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position: chr19:23613536-23613940 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 42

Conread position: 12-416
Cow position: chr19:23613956-23614360 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 283

Conread position: 12-416
Cow position: chr19:23614208-23614612 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 24

Conread position: 12-416
Cow position: chr19:23614292-23614696 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 25

Conread position: 12-416
Cow position: chr19:23614544-23614948 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 30

Conread position: 12-420
Cow position: chr19:23613704-23614112 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 131

Conread position: 12-420
Cow position: chr19:23614124-23614532 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-420
Cow position: chr19:23614628-23615036 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 267
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 198, 192

Conread position: 12-425
Cow position: chr19:14960287-14959876 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 134

Conread position: 12-425
Cow position: chr19:43570204-43569792 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 195

Conread position: 12-433
Cow position: chr19:20635613-20635191 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 23

Conread position: 13-340
Cow position: chr19:23597386-23597713 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 220
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 282, 273

Conread position: 13-370
Cow position: chr19:20677636-20677993 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 236
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 33, 24

Conread position: 13-372
Cow position: chr19:20635360-20635001 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 238
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 109, 116

Conread position: 13-377
Cow position: chr19:14948362-14947998 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 239
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 282, 276

Conread position: 13-416
Cow position: chr19:23597050-23597453 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-417
Cow position: chr19:14948445-14948042 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 13-433
Cow position: chr19:14959548-14959136 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 243

Conread position: 15-285
Cow position: chr19:14940767-14941037 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 178
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 15-349
Cow position: chr19:14960034-14959705 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 106, 94

Conread position: 15-416
Cow position: chr19:14940431-14940832 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-416
Cow position: chr19:14959712-14959313 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 263
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 23, 28

Conread position: 15-416
Cow position: chr19:14960200-14959801 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 47

Conread position: 15-416
Cow position: chr19:23649577-23649978 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 258
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 15-416
Cow position: chr19:23649829-23650230 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-425
Cow position: chr19:23596887-23597293 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 260
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 260, 146

Conread position: 15-425
Cow position: chr19:23613875-23614284 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 0

Conread position: 15-425
Cow position: chr19:43570117-43569709 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 110

Conread position: 16-208
Cow position: chr19:23650250-23650442 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 16-342
Cow position: chr19:20678479-20678802 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 204
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 127, 116

Conread position: 16-368
Cow position: chr19:20678311-20678663 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 230
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 20

Conread position: 16-369
Cow position: chr19:20677723-20678076 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 232
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 21

Conread position: 16-370
Cow position: chr19:20677975-20678329 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 231
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 48, 21

Conread position: 16-371
Cow position: chr19:20635441-20635086 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 109, 113

Conread position: 16-371
Cow position: chr19:20677555-20677910 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 232
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 42, 22

Conread position: 16-371
Cow position: chr19:20677807-20678162 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 231
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 43, 38

Conread position: 16-371
Cow position: chr19:20678227-20678582 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 100

Conread position: 16-400
Cow position: chr19:20678059-20678445 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 127

Conread position: 16-401
Cow position: chr19:14940684-14941069 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 366

Conread position: 16-407
Cow position: chr19:23597305-23597696 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-413
Cow position: chr19:14960117-14959722 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 302

Conread position: 16-413
Cow position: chr19:23597137-23597534 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position: chr19:14940180-14940580 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 270

Conread position: 16-416
Cow position: chr19:14940264-14940664 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position: chr19:14960367-14959969 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 0

Conread position: 16-416
Cow position: chr19:23597221-23597621 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 274

Conread position: 16-416
Cow position: chr19:23649662-23650062 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 286

Conread position: 16-417
Cow position: chr19:14940012-14940413 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 113

Conread position: 16-417
Cow position: chr19:20677891-20678292 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 263
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 130, 105

Conread position: 16-417
Cow position: chr19:43570358-43569967 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 16-420
Cow position: chr19:14940096-14940500 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-420
Cow position: chr19:23649410-23649814 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 262
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 379, 367

Conread position: 16-420
Cow position: chr19:23649746-23650150 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-428
Cow position: chr19:20678143-20678555 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 23

Conread position: 16-436
Cow position: chr19:14959302-14958887 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 273
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 409, 181

Conread position: 16-447
Cow position: chr19:23649914-23650347 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 0

Conread position: 16-448
Cow position: chr19:14940516-14940949 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 123

Conread position: 16-448
Cow position: chr19:23596972-23597402 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 69

Conread position: 17-368
Cow position: chr19:20678396-20678744 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 219
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 312, 0

Conread position: 18-336
Cow position: chr19:23650168-23650486 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 203
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 18-416
Cow position: chr19:23650000-23650398 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-371
Cow position: chr19:23613627-23613979 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 117

Conread position: 19-377
Cow position: chr19:23650085-23650443 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-414
Cow position: chr19:14959215-14958826 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 19-416
Cow position: chr19:14960448-14960053 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 13

Conread position: 19-416
Cow position: chr19:23649497-23649894 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-425
Cow position: chr19:23614467-23614872 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 0

Conread position: 19-431
Cow position: chr19:23649329-23649740 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 265
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 40, 35

Conread position: 21-448
Cow position: chr19:14939933-14940361 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 41

Conread position: 25-416
Cow position: chr19:20677396-20677787 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 245
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 21, 11

Conread position: 36-333
Cow position: chr19:14959120-14958823 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 195
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 46-398
Cow position: chr19:14916017-14916365 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 218
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 283, 120

Conread position: 49-337
Cow position: chr19:14959596-14959308 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 258, 245

Conread position: 58-416
Cow position: chr19:23614422-23614780 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 243
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 62, 71

Conread position: 58-417
Cow position: chr19:43570242-43569883 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 231

Conread position: 63-425
Cow position: chr19:20635646-20635285 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 239
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 309, 317

Conread position: 76-416
Cow position: chr19:23649302-23649642 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 225
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 63, 67

Conread position: 84-416
Cow position: chr19:23613356-23613688 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 222
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 302, 295

Conread position: 89-416
Cow position: chr19:43570452-43570136 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 211
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 55

Conread position: 142-416
Cow position: chr19:14948484-14948211 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 187
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 79, 0

Conread position: 147-374
Cow position: chr19:23649289-23649516 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 149
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 150-425
Cow position: chr19:23613337-23613612 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 14, 264

Conread position: 161-425
Cow position: chr19:20635715-20635453 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 173
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 162, 16

Show alignments to all cow chromosomes.