Cow genome map
| Conread name: | Ss1.1-rlyg14_j16.5 |
| Conread position: | 12-371 |
| Cow position: | chr2:78755520-78755877 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 12-412 |
| Cow position: | chr2:82800048-82800448 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 259 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 178, 187 |
| Conread position: | 12-417 |
| Cow position: | chr2:82799628-82800035 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 117, 98 |
| Conread position: | 12-430 |
| Cow position: | chr2:78755270-78755685 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 12-446 |
| Cow position: | chr2:78755102-78755535 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 13-370 |
| Cow position: | chr2:48689522-48689166 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 13-432 |
| Cow position: | chr2:78754851-78755271 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 273 |
| Conread position: | 13-446 |
| Cow position: | chr2:78755687-78756122 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 119, 109 |
| Conread position: | 14-371 |
| Cow position: | chr2:78754448-78754801 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 24 |
| Conread position: | 15-368 |
| Cow position: | chr2:5874657-5874303 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 15-380 |
| Cow position: | chr2:82799547-82799912 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 181, 191 |
| Conread position: | 15-380 |
| Cow position: | chr2:86465455-86465820 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 312, 299 |
| Conread position: | 15-417 |
| Cow position: | chr2:78754937-78755340 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 0 |
| Conread position: | 15-417 |
| Cow position: | chr2:82799967-82800369 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 15-429 |
| Cow position: | chr2:78755773-78756189 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 272 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 15-445 |
| Cow position: | chr2:78755607-78756036 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 16-375 |
| Cow position: | chr2:86465372-86465731 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 205, 218 |
| Conread position: | 16-402 |
| Cow position: | chr2:5874824-5874438 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 109, 119 |
| Conread position: | 16-416 |
| Cow position: | chr2:5874740-5874340 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 16-416 |
| Cow position: | chr2:82799800-82800200 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 279, 274 |
| Conread position: | 16-416 |
| Cow position: | chr2:82799884-82800284 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 17-410 |
| Cow position: | chr2:78755943-78756335 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 113, 171 |
| Conread position: | 18-417 |
| Cow position: | chr2:78754286-78754685 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 29, 19 |
| Conread position: | 19-371 |
| Cow position: | chr2:86465795-86466147 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 138, 146 |
| Conread position: | 19-372 |
| Cow position: | chr2:86465207-86465560 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 19-402 |
| Cow position: | chr2:82799467-82799850 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 187 |
| Conread position: | 25-416 |
| Cow position: | chr2:86465129-86465520 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 120, 124 |
| Conread position: | 53-362 |
| Cow position: | chr2:82799416-82799726 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 237 |
| Conread position: | 58-368 |
| Cow position: | chr2:78754812-78755122 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 252, 245 |
| Conread position: | 58-417 |
| Cow position: | chr2:82799758-82800117 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 251, 245 |
| Conread position: | 63-375 |
| Cow position: | chr2:86465335-86465647 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 63-431 |
| Cow position: | chr2:78755905-78756273 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 139, 209 |
| Conread position: | 85-413 |
| Cow position: | chr2:48689534-48689207 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 304, 121 |
| Conread position: | 142-446 |
| Cow position: | chr2:78754812-78755118 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 173-417 |
| Cow position: | chr2:82799453-82799697 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.