Cow genome map

Conread name: Ss1.1-rlyg14_j16.5

Conread position: 1-387
Cow position:
Alignm length: 392
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 13

Conread position: 1-416
Cow position:
Alignm length: 422
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 13

Conread position: 1-432
Cow position:
Alignm length: 437
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 294

Conread position: 12-251
Cow position:
Alignm length: 241
Alignm identity: 172
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 47, 42

Conread position: 12-251
Cow position:
Alignm length: 241
Alignm identity: 164
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 42

Conread position: 12-252
Cow position:
Alignm length: 241
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 12-332
Cow position:
Alignm length: 322
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 287, 298

Conread position: 12-368
Cow position:
Alignm length: 359
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 215

Conread position: 12-371
Cow position:
Alignm length: 361
Alignm identity: 222
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 227, 222

Conread position: 12-374
Cow position:
Alignm length: 365
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 197

Conread position: 12-380
Cow position:
Alignm length: 370
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 274

Conread position: 12-401
Cow position:
Alignm length: 390
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-407
Cow position:
Alignm length: 397
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 281

Conread position: 12-416
Cow position:
Alignm length: 409
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 36

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 406
Alignm identity: 259
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 48, 30

Conread position: 12-416
Cow position:
Alignm length: 406
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 374

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-417
Cow position:
Alignm length: 409
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 281

Conread position: 12-417
Cow position:
Alignm length: 410
Alignm identity: 256
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 275, 286

Conread position: 12-420
Cow position:
Alignm length: 411
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 285

Conread position: 12-420
Cow position:
Alignm length: 409
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-425
Cow position:
Alignm length: 418
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 117

Conread position: 12-425
Cow position:
Alignm length: 414
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 0

Conread position: 12-425
Cow position:
Alignm length: 414
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 407, 0

Conread position: 12-432
Cow position:
Alignm length: 422
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 0

Conread position: 12-447
Cow position:
Alignm length: 439
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 263

Conread position: 13-285
Cow position:
Alignm length: 274
Alignm identity: 178
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 46, 41

Conread position: 13-407
Cow position:
Alignm length: 398
Alignm identity: 242
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 113

Conread position: 13-416
Cow position:
Alignm length: 405
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 371

Conread position: 13-416
Cow position:
Alignm length: 406
Alignm identity: 249
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 46, 35

Conread position: 13-420
Cow position:
Alignm length: 408
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-421
Cow position:
Alignm length: 409
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 0

Conread position: 13-425
Cow position:
Alignm length: 413
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 0

Conread position: 13-429
Cow position:
Alignm length: 417
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-416
Cow position:
Alignm length: 406
Alignm identity: 256
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 72, 59

Conread position: 14-425
Cow position:
Alignm length: 412
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 15-336
Cow position:
Alignm length: 323
Alignm identity: 217
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 22, 34

Conread position: 15-340
Cow position:
Alignm length: 327
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 290, 283

Conread position: 15-369
Cow position:
Alignm length: 358
Alignm identity: 233
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 16, 26

Conread position: 15-416
Cow position:
Alignm length: 403
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 34

Conread position: 15-416
Cow position:
Alignm length: 403
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 371

Conread position: 15-416
Cow position:
Alignm length: 403
Alignm identity: 259
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 45, 27

Conread position: 15-417
Cow position:
Alignm length: 404
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 126

Conread position: 15-417
Cow position:
Alignm length: 404
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 115

Conread position: 15-425
Cow position:
Alignm length: 411
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 0

Conread position: 15-425
Cow position:
Alignm length: 412
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 191

Conread position: 15-425
Cow position:
Alignm length: 412
Alignm identity: 266
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 186, 191

Conread position: 15-444
Cow position:
Alignm length: 431
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 405

Conread position: 15-446
Cow position:
Alignm length: 433
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 0

Conread position: 16-249
Cow position:
Alignm length: 237
Alignm identity: 158
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 188, 192

Conread position: 16-250
Cow position:
Alignm length: 237
Alignm identity: 155
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 37, 29

Conread position: 16-340
Cow position:
Alignm length: 326
Alignm identity: 218
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 289, 283

Conread position: 16-363
Cow position:
Alignm length: 349
Alignm identity: 227
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 281, 275

Conread position: 16-368
Cow position:
Alignm length: 355
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 37

Conread position: 16-369
Cow position:
Alignm length: 358
Alignm identity: 222
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 66

Conread position: 16-370
Cow position:
Alignm length: 359
Alignm identity: 232
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 41, 31

Conread position: 16-370
Cow position:
Alignm length: 358
Alignm identity: 222
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 43, 34

Conread position: 16-400
Cow position:
Alignm length: 389
Alignm identity: 257
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 19, 24

Conread position: 16-407
Cow position:
Alignm length: 394
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 122

Conread position: 16-408
Cow position:
Alignm length: 394
Alignm identity: 251
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 379, 366

Conread position: 16-416
Cow position:
Alignm length: 405
Alignm identity: 258
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 19, 24

Conread position: 16-416
Cow position:
Alignm length: 403
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 271

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 404
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 38

Conread position: 16-416
Cow position:
Alignm length: 403
Alignm identity: 253
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 291, 304

Conread position: 16-417
Cow position:
Alignm length: 403
Alignm identity: 260
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 379, 367

Conread position: 16-420
Cow position:
Alignm length: 411
Alignm identity: 265
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 37, 29

Conread position: 16-420
Cow position:
Alignm length: 408
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 21

Conread position: 16-420
Cow position:
Alignm length: 405
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-420
Cow position:
Alignm length: 406
Alignm identity: 256
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 362, 370

Conread position: 16-420
Cow position:
Alignm length: 407
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 37

Conread position: 16-424
Cow position:
Alignm length: 410
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 37

Conread position: 16-425
Cow position:
Alignm length: 412
Alignm identity: 267
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 44, 28

Conread position: 16-425
Cow position:
Alignm length: 411
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 364

Conread position: 16-425
Cow position:
Alignm length: 410
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 0

Conread position: 16-425
Cow position:
Alignm length: 412
Alignm identity: 263
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 126, 115

Conread position: 16-448
Cow position:
Alignm length: 435
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 277

Conread position: 17-369
Cow position:
Alignm length: 355
Alignm identity: 215
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 40, 19

Conread position: 17-402
Cow position:
Alignm length: 390
Alignm identity: 237
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 112

Conread position: 17-408
Cow position:
Alignm length: 393
Alignm identity: 256
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 377, 363

Conread position: 18-348
Cow position:
Alignm length: 333
Alignm identity: 202
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 27

Conread position: 18-383
Cow position:
Alignm length: 371
Alignm identity: 236
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 203, 215

Conread position: 18-417
Cow position:
Alignm length: 400
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-370
Cow position:
Alignm length: 354
Alignm identity: 228
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 29, 19

Conread position: 19-370
Cow position:
Alignm length: 353
Alignm identity: 224
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 119, 124

Conread position: 19-371
Cow position:
Alignm length: 357
Alignm identity: 225
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 45, 23

Conread position: 19-371
Cow position:
Alignm length: 353
Alignm identity: 227
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 19-371
Cow position:
Alignm length: 356
Alignm identity: 230
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 29, 19

Conread position: 19-372
Cow position:
Alignm length: 357
Alignm identity: 225
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 193, 185

Conread position: 19-402
Cow position:
Alignm length: 388
Alignm identity: 243
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 43, 52

Conread position: 19-416
Cow position:
Alignm length: 399
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 361

Conread position: 19-416
Cow position:
Alignm length: 416
Alignm identity: 236
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 35

Conread position: 19-416
Cow position:
Alignm length: 401
Alignm identity: 251
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 124, 101

Conread position: 19-416
Cow position:
Alignm length: 402
Alignm identity: 256
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 29, 19

Conread position: 19-424
Cow position:
Alignm length: 408
Alignm identity: 253
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 120, 102

Conread position: 21-416
Cow position:
Alignm length: 398
Alignm identity: 248
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 105, 101

Conread position: 25-416
Cow position:
Alignm length: 394
Alignm identity: 254
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 228, 234

Conread position: 38-277
Cow position:
Alignm length: 245
Alignm identity: 163
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 12, 27

Conread position: 49-420
Cow position:
Alignm length: 376
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 79

Conread position: 57-420
Cow position:
Alignm length: 364
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 58-368
Cow position:
Alignm length: 312
Alignm identity: 201
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 66, 73

Conread position: 58-401
Cow position:
Alignm length: 345
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 85

Conread position: 59-285
Cow position:
Alignm length: 227
Alignm identity: 158
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 59-416
Cow position:
Alignm length: 359
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 232

Conread position: 74-416
Cow position:
Alignm length: 343
Alignm identity: 212
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 84-416
Cow position:
Alignm length: 335
Alignm identity: 220
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 245, 0

Conread position: 86-425
Cow position:
Alignm length: 340
Alignm identity: 230
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 75, 0

Conread position: 87-425
Cow position:
Alignm length: 339
Alignm identity: 209
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 88-287
Cow position:
Alignm length: 200
Alignm identity: 136
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 88-408
Cow position:
Alignm length: 322
Alignm identity: 220
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 306, 294

Conread position: 88-416
Cow position:
Alignm length: 331
Alignm identity: 202
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 217, 201

Conread position: 88-416
Cow position:
Alignm length: 331
Alignm identity: 205
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 217, 201

Conread position: 88-417
Cow position:
Alignm length: 332
Alignm identity: 225
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 322, 0

Conread position: 98-416
Cow position:
Alignm length: 319
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 121-423
Cow position:
Alignm length: 305
Alignm identity: 204
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 45, 39

Conread position: 142-416
Cow position:
Alignm length: 275
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 142-416
Cow position:
Alignm length: 275
Alignm identity: 180
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 143-381
Cow position:
Alignm length: 239
Alignm identity: 159
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 143-433
Cow position:
Alignm length: 292
Alignm identity: 181
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 283, 0

Conread position: 159-425
Cow position:
Alignm length: 268
Alignm identity: 172
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 236, 230

Conread position: 223-425
Cow position:
Alignm length: 205
Alignm identity: 140
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 152, 181

Show alignments to all cow chromosomes.