Cow genome map

Conread name: Ss1.1-rlyg14_j16.5

Conread position: 6-374
Cow position:
Alignm length: 371
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 56

Conread position: 12-234
Cow position:
Alignm length: 225
Alignm identity: 152
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 37, 30

Conread position: 12-254
Cow position:
Alignm length: 243
Alignm identity: 158
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 12-285
Cow position:
Alignm length: 275
Alignm identity: 174
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 241, 0

Conread position: 12-348
Cow position:
Alignm length: 337
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 0

Conread position: 12-348
Cow position:
Alignm length: 337
Alignm identity: 222
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 12-387
Cow position:
Alignm length: 376
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-401
Cow position:
Alignm length: 393
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 38

Conread position: 12-407
Cow position:
Alignm length: 398
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 277

Conread position: 12-407
Cow position:
Alignm length: 396
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-411
Cow position:
Alignm length: 400
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 406
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 61

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 0

Conread position: 12-420
Cow position:
Alignm length: 409
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-425
Cow position:
Alignm length: 414
Alignm identity: 266
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 110, 0

Conread position: 13-416
Cow position:
Alignm length: 404
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 13-416
Cow position:
Alignm length: 406
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 116

Conread position: 15-252
Cow position:
Alignm length: 238
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 15-311
Cow position:
Alignm length: 299
Alignm identity: 196
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 244, 0

Conread position: 15-401
Cow position:
Alignm length: 388
Alignm identity: 243
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 354, 105

Conread position: 15-407
Cow position:
Alignm length: 396
Alignm identity: 261
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 10

Conread position: 15-416
Cow position:
Alignm length: 402
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-416
Cow position:
Alignm length: 403
Alignm identity: 257
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 150, 142

Conread position: 15-425
Cow position:
Alignm length: 412
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 16-285
Cow position:
Alignm length: 270
Alignm identity: 172
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 16-324
Cow position:
Alignm length: 311
Alignm identity: 205
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 43, 28

Conread position: 16-337
Cow position:
Alignm length: 323
Alignm identity: 217
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 279, 284

Conread position: 16-370
Cow position:
Alignm length: 356
Alignm identity: 223
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 321, 0

Conread position: 16-399
Cow position:
Alignm length: 386
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 16-401
Cow position:
Alignm length: 389
Alignm identity: 245
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 142, 151

Conread position: 16-408
Cow position:
Alignm length: 395
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 29

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 402
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 129

Conread position: 16-417
Cow position:
Alignm length: 402
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-420
Cow position:
Alignm length: 407
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 127

Conread position: 17-416
Cow position:
Alignm length: 400
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-311
Cow position:
Alignm length: 294
Alignm identity: 192
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 19-336
Cow position:
Alignm length: 319
Alignm identity: 207
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 47

Conread position: 19-401
Cow position:
Alignm length: 388
Alignm identity: 258
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 55, 65

Conread position: 19-413
Cow position:
Alignm length: 395
Alignm identity: 253
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 19-416
Cow position:
Alignm length: 398
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-417
Cow position:
Alignm length: 399
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-428
Cow position:
Alignm length: 410
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 183

Conread position: 31-425
Cow position:
Alignm length: 395
Alignm identity: 255
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 386, 0

Conread position: 35-374
Cow position:
Alignm length: 342
Alignm identity: 231
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 108, 104

Conread position: 56-425
Cow position:
Alignm length: 371
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 17

Conread position: 59-402
Cow position:
Alignm length: 346
Alignm identity: 232
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 64, 70

Conread position: 73-379
Cow position:
Alignm length: 308
Alignm identity: 188
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 212, 255

Conread position: 74-416
Cow position:
Alignm length: 345
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 224

Conread position: 82-416
Cow position:
Alignm length: 335
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 82-416
Cow position:
Alignm length: 335
Alignm identity: 225
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 7, 0

Conread position: 85-417
Cow position:
Alignm length: 333
Alignm identity: 220
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 94-416
Cow position:
Alignm length: 324
Alignm identity: 217
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 287, 292

Conread position: 120-407
Cow position:
Alignm length: 290
Alignm identity: 193
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 16, 23

Conread position: 132-432
Cow position:
Alignm length: 304
Alignm identity: 200
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 29

Conread position: 143-425
Cow position:
Alignm length: 284
Alignm identity: 182
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 184, 192

Conread position: 153-416
Cow position:
Alignm length: 266
Alignm identity: 172
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 144, 19

Conread position: 153-425
Cow position:
Alignm length: 273
Alignm identity: 182
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 263, 0

Conread position: 172-420
Cow position:
Alignm length: 249
Alignm identity: 166
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 200-416
Cow position:
Alignm length: 219
Alignm identity: 153
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 8, 32

Show alignments to all cow chromosomes.