Cow genome map
| Conread name: | Ss1.1-rlyg14_j16.5 |
| Conread position: | 6-374 |
| Cow position: | chr23:25660330-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 12-234 |
| Cow position: | chr23:25698302-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 37, 30 |
| Conread position: | 12-254 |
| Cow position: | chr23:25660505-25660747 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-285 |
| Cow position: | chr23:24535691-24535417 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 12-348 |
| Cow position: | chr23:24626410-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 0 |
| Conread position: | 12-348 |
| Cow position: | chr23:24639738-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-387 |
| Cow position: | chr23:24522550-24522175 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-401 |
| Cow position: | chr23:24639402-24639791 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 12-407 |
| Cow position: | chr23:24535859-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 277 |
| Conread position: | 12-407 |
| Cow position: | chr23:24626326-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-411 |
| Cow position: | chr23:24547060-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr23:24547144-24546740 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr23:24560788-24560384 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr23:24639318-24639722 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 12-416 |
| Cow position: | chr23:24639486-24639890 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr23:24639570-24639974 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr23:25626216-25626617 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 12-420 |
| Cow position: | chr23:24560536-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-425 |
| Cow position: | chr23:24522715-24522306 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 13-416 |
| Cow position: | chr23:24547311-24546908 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-416 |
| Cow position: | chr23:25626469-25626869 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 116 |
| Conread position: | 15-252 |
| Cow position: | chr23:25626804-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-311 |
| Cow position: | chr23:24654138-24654436 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 15-401 |
| Cow position: | chr23:24522112-24521738 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 354, 105 |
| Conread position: | 15-407 |
| Cow position: | chr23:25724106-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 15-416 |
| Cow position: | chr23:24560869-24560468 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-416 |
| Cow position: | chr23:24639237-24639638 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 150, 142 |
| Conread position: | 15-425 |
| Cow position: | chr23:25698635-25698226 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 16-285 |
| Cow position: | chr23:25698382-25698113 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-324 |
| Cow position: | chr23:25724021-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 16-337 |
| Cow position: | chr23:25660425-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 279, 284 |
| Conread position: | 16-370 |
| Cow position: | chr23:24535771-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 321, 0 |
| Conread position: | 16-399 |
| Cow position: | chr23:25626136-25626519 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 16-401 |
| Cow position: | chr23:25698550-25698165 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 142, 151 |
| Conread position: | 16-408 |
| Cow position: | chr23:25626556-25626945 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 29 |
| Conread position: | 16-416 |
| Cow position: | chr23:24639658-24640058 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-416 |
| Cow position: | chr23:25660173-25660573 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-416 |
| Cow position: | chr23:25660257-25660657 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 129 |
| Conread position: | 16-417 |
| Cow position: | chr23:24560700-24560299 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-420 |
| Cow position: | chr23:24536023-24535619 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 17-416 |
| Cow position: | chr23:24535938-24535539 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-311 |
| Cow position: | chr23:24522460-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-336 |
| Cow position: | chr23:25626724-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 52, 47 |
| Conread position: | 19-401 |
| Cow position: | chr23:25698463-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 19-413 |
| Cow position: | chr23:25626055-25626449 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 253 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-416 |
| Cow position: | chr23:24560613-24560216 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-417 |
| Cow position: | chr23:24547221-24546823 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-428 |
| Cow position: | chr23:24522791-24522386 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 183 |
| Conread position: | 31-425 |
| Cow position: | chr23:25625983-25626376 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 386, 0 |
| Conread position: | 35-374 |
| Cow position: | chr23:25698699-25698360 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 108, 104 |
| Conread position: | 56-425 |
| Cow position: | chr23:24547352-24546984 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 59-402 |
| Cow position: | chr23:24639197-24639540 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 73-379 |
| Cow position: | chr23:24521983-24521677 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 212, 255 |
| Conread position: | 74-416 |
| Cow position: | chr23:25660147-25660489 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 224 |
| Conread position: | 82-416 |
| Cow position: | chr23:24560886-24560552 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-416 |
| Cow position: | chr23:24626313-24626646 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 85-417 |
| Cow position: | chr23:24522561-24522229 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-416 |
| Cow position: | chr23:25724111-25723789 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 287, 292 |
| Conread position: | 120-407 |
| Cow position: | chr23:25698698-25698411 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 132-432 |
| Cow position: | chr23:24626278-24626579 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 29 |
| Conread position: | 143-425 |
| Cow position: | chr23:24639197-24639478 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 184, 192 |
| Conread position: | 153-416 |
| Cow position: | chr23:24560897-24560636 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 144, 19 |
| Conread position: | 153-425 |
| Cow position: | chr23:24536054-24535783 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 263, 0 |
| Conread position: | 172-420 |
| Cow position: | chr23:24654043-24654291 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 200-416 |
| Cow position: | chr23:24626261-24626478 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 32 |
Show alignments to all cow chromosomes.