Cow genome map
| Conread name: | Ss1.1-rlyg14_j16.5 |
| Conread position: | 12-254 |
| Cow position: | chr24:17070812-17071054 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 12-255 |
| Cow position: | chr24:17077740-17077497 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-349 |
| Cow position: | chr24:17035269-17034933 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 201, 193 |
| Conread position: | 12-412 |
| Cow position: | chr24:17077908-17077508 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 277 |
| Conread position: | 12-416 |
| Cow position: | chr24:17035941-17035537 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 12-416 |
| Cow position: | chr24:17036025-17035621 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 194 |
| Conread position: | 12-420 |
| Cow position: | chr24:17035857-17035449 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 13-416 |
| Cow position: | chr24:17035604-17035201 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-343 |
| Cow position: | chr24:17070730-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-425 |
| Cow position: | chr24:17070646-17071057 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 192 |
| Conread position: | 14-448 |
| Cow position: | chr24:17036275-17035840 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 85 |
| Conread position: | 15-280 |
| Cow position: | chr24:17013268-17013532 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 15-416 |
| Cow position: | chr24:17036358-17035957 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 15-416 |
| Cow position: | chr24:17036607-17036209 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 15-420 |
| Cow position: | chr24:17035686-17035281 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 374 |
| Conread position: | 16-219 |
| Cow position: | chr24:16986451-16986654 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 107, 91 |
| Conread position: | 16-346 |
| Cow position: | chr24:17077820-17077491 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 127, 123 |
| Conread position: | 16-348 |
| Cow position: | chr24:17013185-17013516 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 318, 0 |
| Conread position: | 16-417 |
| Cow position: | chr24:17070564-17070965 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 284, 273 |
| Conread position: | 16-417 |
| Cow position: | chr24:17077988-17077587 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 123 |
| Conread position: | 16-425 |
| Cow position: | chr24:17070480-17070888 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 0 |
| Conread position: | 17-416 |
| Cow position: | chr24:17078071-17077672 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-401 |
| Cow position: | chr24:17035430-17035048 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 25 |
| Conread position: | 19-416 |
| Cow position: | chr24:17036102-17035705 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-416 |
| Cow position: | chr24:17036522-17036125 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 331 |
| Conread position: | 19-416 |
| Cow position: | chr24:17078153-17077756 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-417 |
| Cow position: | chr24:17078237-17077839 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-429 |
| Cow position: | chr24:17035342-17034936 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 268, 274 |
| Conread position: | 25-420 |
| Cow position: | chr24:17035760-17035365 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-401 |
| Cow position: | chr24:17035502-17035132 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-445 |
| Cow position: | chr24:17036426-17036011 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 0 |
| Conread position: | 58-416 |
| Cow position: | chr24:17036147-17035789 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-432 |
| Cow position: | chr24:17070438-17070813 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 76 |
| Conread position: | 59-431 |
| Cow position: | chr24:17078365-17077994 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 358, 0 |
| Conread position: | 62-420 |
| Cow position: | chr24:17013147-17013505 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-420 |
| Cow position: | chr24:17036624-17036289 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 91-284 |
| Cow position: | chr24:16986442-16986635 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 101, 91 |
| Conread position: | 185-387 |
| Cow position: | chr24:16986452-16986654 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-425 |
| Cow position: | chr24:17013138-17013341 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 198, 0 |
Show alignments to all cow chromosomes.