Cow genome map

Conread name: Ss1.1-rlyg14_j16.5

Conread position: 8-416
Cow position:
Alignm length: 414
Alignm identity: 254
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 7, 232

Conread position: 12-239
Cow position:
Alignm length: 228
Alignm identity: 158
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 12-251
Cow position:
Alignm length: 240
Alignm identity: 153
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 12-284
Cow position:
Alignm length: 273
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-326
Cow position:
Alignm length: 316
Alignm identity: 204
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 92, 25

Conread position: 12-362
Cow position:
Alignm length: 351
Alignm identity: 218
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 12-367
Cow position:
Alignm length: 360
Alignm identity: 239
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 47, 43

Conread position: 12-369
Cow position:
Alignm length: 359
Alignm identity: 223
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 41, 35

Conread position: 12-387
Cow position:
Alignm length: 377
Alignm identity: 236
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 115, 131

Conread position: 12-396
Cow position:
Alignm length: 388
Alignm identity: 244
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 211, 66

Conread position: 12-400
Cow position:
Alignm length: 390
Alignm identity: 257
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 380, 243

Conread position: 12-400
Cow position:
Alignm length: 391
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 282

Conread position: 12-412
Cow position:
Alignm length: 402
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 391

Conread position: 12-415
Cow position:
Alignm length: 410
Alignm identity: 261
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 157, 167

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 406
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 278

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position:
Alignm length: 406
Alignm identity: 260
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 275, 281

Conread position: 12-416
Cow position:
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-425
Cow position:
Alignm length: 416
Alignm identity: 265
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 106, 30

Conread position: 12-425
Cow position:
Alignm length: 415
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 280

Conread position: 13-202
Cow position:
Alignm length: 191
Alignm identity: 129
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 114, 119

Conread position: 13-425
Cow position:
Alignm length: 414
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 55

Conread position: 13-425
Cow position:
Alignm length: 413
Alignm identity: 264
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 327, 0

Conread position: 13-433
Cow position:
Alignm length: 425
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 34

Conread position: 14-400
Cow position:
Alignm length: 389
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 115

Conread position: 14-416
Cow position:
Alignm length: 404
Alignm identity: 254
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 381, 375

Conread position: 15-199
Cow position:
Alignm length: 185
Alignm identity: 127
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 15-362
Cow position:
Alignm length: 349
Alignm identity: 229
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 295, 291

Conread position: 15-362
Cow position:
Alignm length: 349
Alignm identity: 234
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 295, 283

Conread position: 15-398
Cow position:
Alignm length: 384
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-416
Cow position:
Alignm length: 402
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-417
Cow position:
Alignm length: 404
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 368

Conread position: 15-425
Cow position:
Alignm length: 411
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 0

Conread position: 15-434
Cow position:
Alignm length: 422
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 24

Conread position: 15-445
Cow position:
Alignm length: 433
Alignm identity: 277
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 128, 122

Conread position: 15-448
Cow position:
Alignm length: 435
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 0

Conread position: 16-251
Cow position:
Alignm length: 236
Alignm identity: 163
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 16-333
Cow position:
Alignm length: 319
Alignm identity: 212
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 281, 273

Conread position: 16-340
Cow position:
Alignm length: 325
Alignm identity: 218
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 16-346
Cow position:
Alignm length: 333
Alignm identity: 212
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 102, 113

Conread position: 16-365
Cow position:
Alignm length: 350
Alignm identity: 234
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 311, 0

Conread position: 16-368
Cow position:
Alignm length: 353
Alignm identity: 226
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 16-390
Cow position:
Alignm length: 377
Alignm identity: 237
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 96, 116

Conread position: 16-407
Cow position:
Alignm length: 395
Alignm identity: 241
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 33, 28

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 404
Alignm identity: 264
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 59

Conread position: 16-416
Cow position:
Alignm length: 402
Alignm identity: 257
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 26, 33

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 254
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position:
Alignm length: 403
Alignm identity: 254
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 214, 220

Conread position: 16-416
Cow position:
Alignm length: 401
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-417
Cow position:
Alignm length: 402
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-425
Cow position:
Alignm length: 410
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 0

Conread position: 16-432
Cow position:
Alignm length: 418
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 369

Conread position: 16-433
Cow position:
Alignm length: 418
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-448
Cow position:
Alignm length: 434
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 0

Conread position: 17-371
Cow position:
Alignm length: 355
Alignm identity: 218
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 17-380
Cow position:
Alignm length: 368
Alignm identity: 229
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 121, 56

Conread position: 17-407
Cow position:
Alignm length: 395
Alignm identity: 252
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 24, 34

Conread position: 17-416
Cow position:
Alignm length: 401
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 272

Conread position: 18-407
Cow position:
Alignm length: 392
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 33

Conread position: 18-407
Cow position:
Alignm length: 393
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 120

Conread position: 18-407
Cow position:
Alignm length: 393
Alignm identity: 245
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 51, 36

Conread position: 19-337
Cow position:
Alignm length: 320
Alignm identity: 214
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 291, 287

Conread position: 19-407
Cow position:
Alignm length: 389
Alignm identity: 250
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 19-416
Cow position:
Alignm length: 401
Alignm identity: 240
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 147, 154

Conread position: 19-416
Cow position:
Alignm length: 400
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 12

Conread position: 19-416
Cow position:
Alignm length: 399
Alignm identity: 241
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 275, 184

Conread position: 19-417
Cow position:
Alignm length: 400
Alignm identity: 261
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 65, 55

Conread position: 19-424
Cow position:
Alignm length: 408
Alignm identity: 245
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 107, 100

Conread position: 19-425
Cow position:
Alignm length: 408
Alignm identity: 250
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 275, 184

Conread position: 48-432
Cow position:
Alignm length: 386
Alignm identity: 236
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 378, 0

Conread position: 49-387
Cow position:
Alignm length: 342
Alignm identity: 223
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 132, 338

Conread position: 50-369
Cow position:
Alignm length: 327
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 68, 83

Conread position: 53-369
Cow position:
Alignm length: 318
Alignm identity: 213
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 85, 28

Conread position: 54-416
Cow position:
Alignm length: 364
Alignm identity: 220
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 211, 217

Conread position: 58-416
Cow position:
Alignm length: 368
Alignm identity: 229
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 107, 99

Conread position: 58-416
Cow position:
Alignm length: 360
Alignm identity: 221
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 233, 241

Conread position: 58-416
Cow position:
Alignm length: 361
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 28

Conread position: 58-416
Cow position:
Alignm length: 360
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 228

Conread position: 58-417
Cow position:
Alignm length: 360
Alignm identity: 213
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 75-342
Cow position:
Alignm length: 268
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 75-446
Cow position:
Alignm length: 374
Alignm identity: 244
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 220, 214

Conread position: 76-416
Cow position:
Alignm length: 342
Alignm identity: 216
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 147, 132

Conread position: 76-434
Cow position:
Alignm length: 362
Alignm identity: 241
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 28, 40

Conread position: 82-417
Cow position:
Alignm length: 337
Alignm identity: 223
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 36, 12

Conread position: 84-453
Cow position:
Alignm length: 373
Alignm identity: 237
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 211, 217

Conread position: 85-348
Cow position:
Alignm length: 265
Alignm identity: 171
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 108, 121

Conread position: 85-387
Cow position:
Alignm length: 303
Alignm identity: 192
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 297, 0

Conread position: 85-401
Cow position:
Alignm length: 318
Alignm identity: 195
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 180, 186

Conread position: 86-283
Cow position:
Alignm length: 199
Alignm identity: 135
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 51

Conread position: 87-379
Cow position:
Alignm length: 294
Alignm identity: 192
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 209, 17

Conread position: 89-409
Cow position:
Alignm length: 322
Alignm identity: 203
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 222, 198

Conread position: 96-425
Cow position:
Alignm length: 330
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 0

Conread position: 100-420
Cow position:
Alignm length: 321
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 102-429
Cow position:
Alignm length: 334
Alignm identity: 217
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 31, 23

Conread position: 108-416
Cow position:
Alignm length: 311
Alignm identity: 197
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 15

Conread position: 133-416
Cow position:
Alignm length: 289
Alignm identity: 187
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 17, 159

Conread position: 139-416
Cow position:
Alignm length: 278
Alignm identity: 184
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 19, 0

Conread position: 142-417
Cow position:
Alignm length: 276
Alignm identity: 189
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 147-434
Cow position:
Alignm length: 289
Alignm identity: 190
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 279, 9

Conread position: 162-401
Cow position:
Alignm length: 240
Alignm identity: 152
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 162-425
Cow position:
Alignm length: 265
Alignm identity: 166
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 214, 218

Conread position: 163-373
Cow position:
Alignm length: 212
Alignm identity: 149
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 206, 0

Conread position: 207-420
Cow position:
Alignm length: 216
Alignm identity: 144
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 221-425
Cow position:
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 25, 9

Show alignments to all cow chromosomes.