Cow genome map
| Conread name: | Ss1.1-rlyg14_j16.5 |
| Conread position: | 1-433 |
| Cow position: | chr28:7757505-7757939 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 3-425 |
| Cow position: | chr28:7758332-7758753 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 416, 0 |
| Conread position: | 11-291 |
| Cow position: | chr28:9290435-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 114, 35 |
| Conread position: | 11-363 |
| Cow position: | chr28:9298833-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 11-401 |
| Cow position: | chr28:7757348-7757738 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 286, 281 |
| Conread position: | 12-265 |
| Cow position: | chr28:7810692-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 113, 117 |
| Conread position: | 12-347 |
| Cow position: | chr28:11333868-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-373 |
| Cow position: | chr28:34679543-34679179 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 12-375 |
| Cow position: | chr28:9253288-9253652 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 12-376 |
| Cow position: | chr28:7758509-7758873 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 287, 263 |
| Conread position: | 12-380 |
| Cow position: | chr28:34695845-34696213 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 141, 127 |
| Conread position: | 12-407 |
| Cow position: | chr28:7757937-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr28:9253120-9253524 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr28:9290189-9290587 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 12-416 |
| Cow position: | chr28:9298751-9299152 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 12-416 |
| Cow position: | chr28:11334036-11333632 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 382, 373 |
| Conread position: | 12-425 |
| Cow position: | chr28:7757685-7758098 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 285, 280 |
| Conread position: | 12-428 |
| Cow position: | chr28:7757433-7757849 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-413 |
| Cow position: | chr28:7757602-7758002 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-416 |
| Cow position: | chr28:9253038-9253440 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 278 |
| Conread position: | 15-369 |
| Cow position: | chr28:7757856-7758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-369 |
| Cow position: | chr28:7810284-7810629 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 282, 240 |
| Conread position: | 15-376 |
| Cow position: | chr28:9290272-9290631 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 103 |
| Conread position: | 15-381 |
| Cow position: | chr28:33210248-33210615 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 314, 0 |
| Conread position: | 15-402 |
| Cow position: | chr28:7757190-7757571 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 15-425 |
| Cow position: | chr28:9252955-9253365 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-433 |
| Cow position: | chr28:7810527-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 114, 105 |
| Conread position: | 15-445 |
| Cow position: | chr28:7757772-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 0 |
| Conread position: | 16-325 |
| Cow position: | chr28:7758025-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 33, 28 |
| Conread position: | 16-374 |
| Cow position: | chr28:9290357-9290713 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 193, 18 |
| Conread position: | 16-374 |
| Cow position: | chr28:34673376-34673734 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 16-380 |
| Cow position: | chr28:34696185-34696549 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 16-400 |
| Cow position: | chr28:9299326-9299707 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 272, 246 |
| Conread position: | 16-416 |
| Cow position: | chr28:9298922-9299306 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 16-417 |
| Cow position: | chr28:7758429-7758831 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 261 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 396, 349 |
| Conread position: | 18-416 |
| Cow position: | chr28:9298590-9298986 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 19-337 |
| Cow position: | chr28:9299245-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 19-381 |
| Cow position: | chr28:34695936-34696298 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 19-407 |
| Cow position: | chr28:9253211-9253599 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 124 |
| Conread position: | 19-417 |
| Cow position: | chr28:11334113-11333715 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 124, 112 |
| Conread position: | 47-369 |
| Cow position: | chr28:11333666-11333349 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 200 |
| Conread position: | 47-420 |
| Cow position: | chr28:34679590-34679216 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 49 |
| Conread position: | 48-416 |
| Cow position: | chr28:9289970-9290337 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 79, 238 |
| Conread position: | 58-350 |
| Cow position: | chr28:34673502-34673794 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-416 |
| Cow position: | chr28:9299203-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 58-444 |
| Cow position: | chr28:9252913-9253303 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 84-420 |
| Cow position: | chr28:33210233-33210569 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-416 |
| Cow position: | chr28:34673364-34673692 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 288, 298 |
| Conread position: | 98-348 |
| Cow position: | chr28:7810283-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-425 |
| Cow position: | chr28:7757189-7757510 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 202, 144 |
| Conread position: | 132-416 |
| Cow position: | chr28:7757385-7757669 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 137-401 |
| Cow position: | chr28:7810248-7810502 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 163-416 |
| Cow position: | chr28:33210228-33210481 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 198, 204 |
Show alignments to all cow chromosomes.