Cow genome map
| Conread name: | Ss1.1-rlyg14_j16.5 |
| Conread position: | 12-251 |
| Cow position: | chr3:62743193-62743432 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-332 |
| Cow position: | chr3:68046038-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 305, 0 |
| Conread position: | 12-338 |
| Cow position: | chr3:68027445-68027769 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 114 |
| Conread position: | 12-368 |
| Cow position: | chr3:68027025-68027381 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 277, 290 |
| Conread position: | 12-416 |
| Cow position: | chr3:62722056-62721652 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 279 |
| Conread position: | 12-416 |
| Cow position: | chr3:62742463-62742862 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 83, 63 |
| Conread position: | 12-420 |
| Cow position: | chr3:62721972-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-420 |
| Cow position: | chr3:62742794-62743181 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 90, 104 |
| Conread position: | 14-429 |
| Cow position: | chr3:68027279-68027694 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-398 |
| Cow position: | chr3:68045957-68046340 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-416 |
| Cow position: | chr3:62722221-62721820 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-416 |
| Cow position: | chr3:62722305-62721904 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 15-416 |
| Cow position: | chr3:62742299-62742696 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 15-416 |
| Cow position: | chr3:62742382-62742778 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 259, 0 |
| Conread position: | 15-416 |
| Cow position: | chr3:62743033-62743429 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 282, 82 |
| Conread position: | 15-417 |
| Cow position: | chr3:62722137-62721735 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-425 |
| Cow position: | chr3:77351053-77350654 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 16-377 |
| Cow position: | chr3:68045790-68046151 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-395 |
| Cow position: | chr3:68027365-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-416 |
| Cow position: | chr3:68045706-68046106 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 196 |
| Conread position: | 16-417 |
| Cow position: | chr3:68027113-68027514 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-401 |
| Cow position: | chr3:62742552-62742932 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 333, 89 |
| Conread position: | 17-425 |
| Cow position: | chr3:68045875-68046282 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 0 |
| Conread position: | 18-417 |
| Cow position: | chr3:68045624-68046023 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 275 |
| Conread position: | 21-409 |
| Cow position: | chr3:62743118-62743506 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 254 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 194, 183 |
| Conread position: | 21-416 |
| Cow position: | chr3:62742638-62743026 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 21 |
| Conread position: | 27-425 |
| Cow position: | chr3:62742229-62742623 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 57-425 |
| Cow position: | chr3:68045579-68045947 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 338, 323 |
| Conread position: | 57-425 |
| Cow position: | chr3:77350934-77350569 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 250, 236 |
| Conread position: | 85-425 |
| Cow position: | chr3:62722319-62721980 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 99-420 |
| Cow position: | chr3:62743033-62743349 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 103-425 |
| Cow position: | chr3:68027032-68027353 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 107-420 |
| Cow position: | chr3:62722381-62722068 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 177-416 |
| Cow position: | chr3:68027022-68027261 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 221-416 |
| Cow position: | chr3:68026982-68027177 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.