Cow genome map

Conread name: Ss1.1-rlyg14_j16.5

Conread position: 4-416
Cow position: chr7:11601179-11600766 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 269
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 9, 34

Conread position: 6-368
Cow position: chr7:8325415-8325778 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 230
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 40

Conread position: 9-417
Cow position: chr7:18390008-18390416 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 263
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 132, 119

Conread position: 11-371
Cow position: chr7:8243067-8243426 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 107, 136

Conread position: 11-371
Cow position: chr7:8243151-8243510 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 229
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 48, 37

Conread position: 11-425
Cow position: chr7:42879344-42878931 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 75

Conread position: 11-433
Cow position: chr7:8243486-8243909 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 267
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 60

Conread position: 12-241
Cow position: chr7:42878503-42878274 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 149
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 12-317
Cow position: chr7:18390515-18390820 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 201
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 12-368
Cow position: chr7:1439908-1440263 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 238
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 30, 39

Conread position: 12-370
Cow position: chr7:11600834-11600476 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 193

Conread position: 12-381
Cow position: chr7:1015124-1015495 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 330

Conread position: 12-416
Cow position: chr7:3180050-3180454 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 124

Conread position: 12-416
Cow position: chr7:3180218-3180622 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-416
Cow position: chr7:11601002-11600598 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 258
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 113, 103

Conread position: 12-416
Cow position: chr7:42878839-42878435 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 109

Conread position: 12-416
Cow position: chr7:42879007-42878603 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 279

Conread position: 12-420
Cow position: chr7:3179966-3180374 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-425
Cow position: chr7:1014872-1015285 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 123

Conread position: 12-425
Cow position: chr7:3179882-3180294 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 405, 0

Conread position: 12-425
Cow position: chr7:3180134-3180546 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 367

Conread position: 12-425
Cow position: chr7:8324750-8325162 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 262
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 47, 33

Conread position: 12-425
Cow position: chr7:42878923-42878511 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 193

Conread position: 12-433
Cow position: chr7:1014956-1015378 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 414, 0

Conread position: 12-445
Cow position: chr7:3180386-3180819 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 294

Conread position: 12-446
Cow position: chr7:11601086-11600651 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 25

Conread position: 14-416
Cow position: chr7:1014790-1015192 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-416
Cow position: chr7:42879173-42878771 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-400
Cow position: chr7:18390350-18390735 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-409
Cow position: chr7:42878584-42878189 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 258
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 312, 335

Conread position: 15-416
Cow position: chr7:1014377-1014772 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 255
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 196, 187

Conread position: 15-420
Cow position: chr7:1439656-1440063 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 263
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 33, 103

Conread position: 15-420
Cow position: chr7:42879424-42879019 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 269
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 49, 27

Conread position: 15-425
Cow position: chr7:42879088-42878679 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 0

Conread position: 16-232
Cow position: chr7:8325930-8326146 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 144
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 127, 107

Conread position: 16-368
Cow position: chr7:8324838-8325190 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 234
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 103, 126

Conread position: 16-370
Cow position: chr7:8325762-8326116 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 233
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 43, 23

Conread position: 16-371
Cow position: chr7:8277449-8277804 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 222
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 126, 114

Conread position: 16-371
Cow position: chr7:8277785-8278140 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 126, 112

Conread position: 16-371
Cow position: chr7:8278037-8278392 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 230
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 25, 32

Conread position: 16-374
Cow position: chr7:8277869-8278227 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 228
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 43, 32

Conread position: 16-380
Cow position: chr7:18390099-18390463 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 111

Conread position: 16-412
Cow position: chr7:18390435-18390831 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-416
Cow position: chr7:18390267-18390667 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 16-417
Cow position: chr7:1014708-1015109 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 25

Conread position: 16-417
Cow position: chr7:3180306-3180707 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 220

Conread position: 16-425
Cow position: chr7:3179802-3180210 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 401, 0

Conread position: 16-433
Cow position: chr7:8243659-8244075 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 263
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 289, 304

Conread position: 16-436
Cow position: chr7:11434949-11434542 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 264
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 296, 102

Conread position: 16-448
Cow position: chr7:8325174-8325607 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 283
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 130, 107

Conread position: 17-346
Cow position: chr7:8278122-8278451 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 209
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 40, 27

Conread position: 17-368
Cow position: chr7:1438355-1438706 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 67, 81

Conread position: 17-368
Cow position: chr7:8243241-8243591 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 228
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 127, 115

Conread position: 17-368
Cow position: chr7:8325343-8325694 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 230
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 113, 126

Conread position: 17-370
Cow position: chr7:8242821-8243174 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 230
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 20

Conread position: 17-371
Cow position: chr7:8243408-8243762 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 228
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 42, 21

Conread position: 17-436
Cow position: chr7:8325679-8326099 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 125

Conread position: 18-330
Cow position: chr7:8325848-8326163 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 209
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 41, 35

Conread position: 18-339
Cow position: chr7:1014296-1014617 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 279, 272

Conread position: 18-416
Cow position: chr7:1439831-1440227 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 261
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 120, 24

Conread position: 18-416
Cow position: chr7:42879253-42878855 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-242
Cow position: chr7:11434463-11434240 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 146
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 124, 111

Conread position: 19-369
Cow position: chr7:8325093-8325443 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 225
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 114, 124

Conread position: 19-413
Cow position: chr7:18390186-18390580 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 28

Conread position: 19-416
Cow position: chr7:1015047-1015444 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 24

Conread position: 19-416
Cow position: chr7:3179721-3180118 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 267

Conread position: 19-417
Cow position: chr7:42878748-42878350 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 18

Conread position: 19-433
Cow position: chr7:8278208-8278619 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 262
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 26

Conread position: 19-436
Cow position: chr7:8277704-8278122 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 260
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 19

Conread position: 25-416
Cow position: chr7:1438279-1438670 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 230
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 112, 118

Conread position: 48-431
Cow position: chr7:1014656-1015038 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 0

Conread position: 56-370
Cow position: chr7:8243615-8243929 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 202
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 231, 245

Conread position: 57-417
Cow position: chr7:18389972-18390332 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 222
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 248, 236

Conread position: 58-285
Cow position: chr7:11434508-11434281 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 150
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 85

Conread position: 58-370
Cow position: chr7:8277659-8277971 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 200
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 229, 243

Conread position: 58-408
Cow position: chr7:42878625-42878275 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 60-407
Cow position: chr7:1439451-1439800 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 238
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 227, 137

Conread position: 62-348
Cow position: chr7:11601204-11600918 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 60, 71

Conread position: 62-445
Cow position: chr7:11600868-11600484 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 229

Conread position: 64-371
Cow position: chr7:8325306-8325613 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 204
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 77

Conread position: 74-346
Cow position: chr7:11434821-11434549 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 57, 48

Conread position: 84-416
Cow position: chr7:8277601-8277933 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 220
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 59, 44

Conread position: 87-417
Cow position: chr7:3179705-3180035 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 222
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 88-436
Cow position: chr7:11601261-11600913 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 233
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 116, 34

Conread position: 89-416
Cow position: chr7:1014283-1014610 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 218
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 287, 281

Conread position: 142-374
Cow position: chr7:11434508-11434276 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 142-416
Cow position: chr7:3179676-3179950 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 158, 150

Conread position: 147-420
Cow position: chr7:1014257-1014530 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 160-368
Cow position: chr7:8324730-8324938 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 139
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 52

Conread position: 160-387
Cow position: chr7:8277257-8277484 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 155
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 52

Conread position: 225-401
Cow position: chr7:1439448-1439623 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 140, 0

Show alignments to all cow chromosomes.