Cow genome map
| Conread name: | Ss1.1-rlyg14_j16.5 |
| Conread position: | 12-312 |
| Cow position: | chr8:46817070-46817370 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-368 |
| Cow position: | chr8:46816986-46817342 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 12-411 |
| Cow position: | chr8:48406605-48406197 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 299, 282 |
| Conread position: | 12-416 |
| Cow position: | chr8:45201455-45201859 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-416 |
| Cow position: | chr8:46816062-46816466 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 12-416 |
| Cow position: | chr8:46816146-46816550 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 12-416 |
| Cow position: | chr8:46816398-46816802 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 280 |
| Conread position: | 12-416 |
| Cow position: | chr8:48407277-48406873 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 262 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 363, 374 |
| Conread position: | 12-417 |
| Cow position: | chr8:45200951-45201356 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 12-417 |
| Cow position: | chr8:48407529-48407124 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-420 |
| Cow position: | chr8:45201203-45201611 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 46 |
| Conread position: | 12-420 |
| Cow position: | chr8:48407025-48406617 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 116, 121 |
| Conread position: | 12-425 |
| Cow position: | chr8:48407445-48407033 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 0 |
| Conread position: | 12-432 |
| Cow position: | chr8:55581343-55581763 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 381, 372 |
| Conread position: | 12-433 |
| Cow position: | chr8:45201287-45201709 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 0 |
| Conread position: | 12-448 |
| Cow position: | chr8:45201539-45201976 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 0 |
| Conread position: | 13-416 |
| Cow position: | chr8:46815892-46816298 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 73, 135 |
| Conread position: | 13-416 |
| Cow position: | chr8:46815979-46816382 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 13-416 |
| Cow position: | chr8:46816483-46816886 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-416 |
| Cow position: | chr8:46816735-46817138 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 223 |
| Conread position: | 14-342 |
| Cow position: | chr8:48407107-48406779 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 287, 275 |
| Conread position: | 14-414 |
| Cow position: | chr8:55581261-55581661 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-411 |
| Cow position: | chr8:46816905-46817301 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-416 |
| Cow position: | chr8:45201374-45201775 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-417 |
| Cow position: | chr8:46816233-46816635 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 73, 86 |
| Conread position: | 15-417 |
| Cow position: | chr8:46816569-46816971 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-420 |
| Cow position: | chr8:55580926-55581331 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-420 |
| Cow position: | chr8:55581010-55581415 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-425 |
| Cow position: | chr8:46816653-46817062 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 128 |
| Conread position: | 15-425 |
| Cow position: | chr8:46816821-46817230 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 40 |
| Conread position: | 15-438 |
| Cow position: | chr8:48406686-48406265 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 16-348 |
| Cow position: | chr8:6958059-6957728 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 282, 270 |
| Conread position: | 16-413 |
| Cow position: | chr8:55581095-55581492 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-416 |
| Cow position: | chr8:48407609-48407209 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 16-421 |
| Cow position: | chr8:48406853-48406449 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 92, 111 |
| Conread position: | 16-425 |
| Cow position: | chr8:46816318-46816726 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 0 |
| Conread position: | 17-416 |
| Cow position: | chr8:45201040-45201439 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 112 |
| Conread position: | 17-416 |
| Cow position: | chr8:55580844-55581243 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-420 |
| Cow position: | chr8:55580760-55581163 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 279 |
| Conread position: | 18-440 |
| Cow position: | chr8:45201125-45201548 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 19-434 |
| Cow position: | chr8:55581182-55581598 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 407, 0 |
| Conread position: | 30-417 |
| Cow position: | chr8:48407343-48406956 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-425 |
| Cow position: | chr8:48406727-48406361 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 58-425 |
| Cow position: | chr8:48407147-48406781 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 67 |
| Conread position: | 62-416 |
| Cow position: | chr8:48407647-48407293 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 47 |
| Conread position: | 84-416 |
| Cow position: | chr8:45200939-45201271 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 141-425 |
| Cow position: | chr8:45200912-45201195 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 151-416 |
| Cow position: | chr8:55580725-55580991 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 185-412 |
| Cow position: | chr8:6958058-6957831 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.