Cow genome map
| Conread name: | Ss1.1-rlyg14_j16.5 |
| Conread position: | 6-368 |
| Cow position: | chrX:25309648-25310011 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 108 |
| Conread position: | 12-265 |
| Cow position: | chrX:29044907-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-266 |
| Cow position: | chrX:25310327-25310581 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-288 |
| Cow position: | chrX:25324478-25324206 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 12-368 |
| Cow position: | chrX:29045810-29045454 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 12-416 |
| Cow position: | chrX:25309739-25310143 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 12-424 |
| Cow position: | chrX:25325738-25325326 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 12-425 |
| Cow position: | chrX:25309991-25310403 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 290, 277 |
| Conread position: | 12-425 |
| Cow position: | chrX:25325570-25325158 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 276 |
| Conread position: | 12-425 |
| Cow position: | chrX:29045243-29044831 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 13-416 |
| Cow position: | chrX:25325317-25324914 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 13-420 |
| Cow position: | chrX:25324645-25324238 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 261 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 46, 40 |
| Conread position: | 13-420 |
| Cow position: | chrX:25325149-25324742 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 130 |
| Conread position: | 14-278 |
| Cow position: | chrX:29045640-29045376 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 198, 190 |
| Conread position: | 14-347 |
| Cow position: | chrX:25310245-25310578 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-416 |
| Cow position: | chrX:25309825-25310227 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 363 |
| Conread position: | 14-416 |
| Cow position: | chrX:25310161-25310563 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 265 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 115, 99 |
| Conread position: | 15-345 |
| Cow position: | chrX:29045723-29045393 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 124, 128 |
| Conread position: | 15-351 |
| Cow position: | chrX:29044988-29044652 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-356 |
| Cow position: | chrX:25324559-25324220 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 140, 135 |
| Conread position: | 15-371 |
| Cow position: | chrX:25309910-25310266 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-416 |
| Cow position: | chrX:25325231-25324830 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 15-416 |
| Cow position: | chrX:25325399-25324998 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 29 |
| Conread position: | 15-424 |
| Cow position: | chrX:25324811-25324402 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 128 |
| Conread position: | 15-425 |
| Cow position: | chrX:25324727-25324318 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 0 |
| Conread position: | 16-370 |
| Cow position: | chrX:25324978-25324624 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 16-402 |
| Cow position: | chrX:14181369-14180983 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 16-445 |
| Cow position: | chrX:25310079-25310509 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 368 |
| Conread position: | 17-372 |
| Cow position: | chrX:12627544-12627898 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 126, 105 |
| Conread position: | 18-425 |
| Cow position: | chrX:29045153-29044747 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 19-370 |
| Cow position: | chrX:13826924-13826573 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 112 |
| Conread position: | 19-423 |
| Cow position: | chrX:29045068-29044665 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 0 |
| Conread position: | 19-448 |
| Cow position: | chrX:25324891-25324461 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 124 |
| Conread position: | 48-416 |
| Cow position: | chrX:29045858-29045490 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 58-416 |
| Cow position: | chrX:29045281-29044923 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 58-425 |
| Cow position: | chrX:25325776-25325410 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 67, 71 |
| Conread position: | 59-420 |
| Cow position: | chrX:29045361-29045003 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 77-431 |
| Cow position: | chrX:25325589-25325236 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 342, 0 |
| Conread position: | 103-376 |
| Cow position: | chrX:13826924-13826651 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 208, 185 |
| Conread position: | 108-416 |
| Cow position: | chrX:25309667-25309975 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 67 |
| Conread position: | 139-413 |
| Cow position: | chrX:25325779-25325505 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-368 |
| Cow position: | chrX:12627837-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 88, 66 |
| Conread position: | 154-417 |
| Cow position: | chrX:29045836-29045573 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 183-416 |
| Cow position: | chrX:25309658-25309891 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 66, 77 |
Show alignments to all cow chromosomes.