Cow genome map
| Conread name: | Ss1.1-rmed25c_n3.5 |
| Conread position: | 2-503 |
| Cow position: | chr14:25876632-25877134 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 133 |
| Conread position: | 2-561 |
| Cow position: | chr14:25836360-25836920 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 7, 464 |
| Conread position: | 3-389 |
| Cow position: | chr14:25910893-25911278 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 6, 158 |
| Conread position: | 8-447 |
| Cow position: | chr14:25860344-25860783 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 121, 126 |
| Conread position: | 8-460 |
| Cow position: | chr14:25877395-25877847 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 121, 126 |
| Conread position: | 8-567 |
| Cow position: | chr14:25859420-25859979 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 335 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 8-586 |
| Cow position: | chr14:25836115-25836693 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-598 |
| Cow position: | chr14:25836619-25837209 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 352 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 143, 157 |
| Conread position: | 9-585 |
| Cow position: | chr14:25783749-25784325 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 81 |
| Conread position: | 11-459 |
| Cow position: | chr14:25859675-25860123 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 272 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 118, 123 |
| Conread position: | 14-557 |
| Cow position: | chr14:25910741-25911278 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 318 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 14-602 |
| Cow position: | chr14:25860014-25860602 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 362 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 115, 120 |
| Conread position: | 14-602 |
| Cow position: | chr14:25877065-25877653 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 359 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 465, 498 |
| Conread position: | 22-600 |
| Cow position: | chr14:25836549-25837127 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-477 |
| Cow position: | chr14:25859611-25860057 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 38-478 |
| Cow position: | chr14:25910845-25911285 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-561 |
| Cow position: | chr14:25835809-25836332 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 298 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-571 |
| Cow position: | chr14:25795168-25794635 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 52 |
| Conread position: | 39-556 |
| Cow position: | chr14:25794663-25794147 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 112, 126 |
| Conread position: | 53-438 |
| Cow position: | chr14:3156095-3156480 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-456 |
| Cow position: | chr14:680841-681243 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 273, 7 |
| Conread position: | 53-533 |
| Cow position: | chr14:3127741-3127260 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 424, 412 |
| Conread position: | 53-565 |
| Cow position: | chr14:25877356-25877868 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 301 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 49 |
| Conread position: | 53-568 |
| Cow position: | chr14:25859297-25859812 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-587 |
| Cow position: | chr14:25836496-25837030 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 53-587 |
| Cow position: | chr14:25876432-25876966 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 76, 82 |
| Conread position: | 53-587 |
| Cow position: | chr14:25876936-25877470 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 76, 81 |
| Conread position: | 60-561 |
| Cow position: | chr14:25860144-25860645 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 292 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-561 |
| Cow position: | chr14:25877195-25877696 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 293 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-587 |
| Cow position: | chr14:25859390-25859915 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 67, 72 |
| Conread position: | 72-568 |
| Cow position: | chr14:25795386-25794890 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 316 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 74-465 |
| Cow position: | chr14:25784318-25784709 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 77, 93 |
| Conread position: | 77-569 |
| Cow position: | chr14:25784238-25784729 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 77-569 |
| Cow position: | chr14:25794708-25794216 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 309 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 173, 12 |
| Conread position: | 80-570 |
| Cow position: | chr14:25784073-25784562 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 80-586 |
| Cow position: | chr14:25794873-25794368 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 172, 9 |
| Conread position: | 83-404 |
| Cow position: | chr14:680951-681275 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 22, 181 |
| Conread position: | 84-480 |
| Cow position: | chr14:3127878-3127482 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 67, 101 |
| Conread position: | 84-569 |
| Cow position: | chr14:25783572-25784057 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 83 |
| Conread position: | 85-568 |
| Cow position: | chr14:25783741-25784224 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 88-600 |
| Cow position: | chr14:25859248-25859760 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 303 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-485 |
| Cow position: | chr14:3101438-3101044 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 89-501 |
| Cow position: | chr14:3156047-3156459 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 156, 160 |
| Conread position: | 89-561 |
| Cow position: | chr14:25836364-25836836 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 293 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 89-587 |
| Cow position: | chr14:25876636-25877134 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 168, 161 |
| Conread position: | 97-579 |
| Cow position: | chr14:25836288-25836768 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 102-456 |
| Cow position: | chr14:3080096-3079742 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 102-600 |
| Cow position: | chr14:25836125-25836623 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 248, 227 |
| Conread position: | 103-580 |
| Cow position: | chr14:25835790-25836267 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 104-447 |
| Cow position: | chr14:25836883-25837226 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 104-567 |
| Cow position: | chr14:3127774-3127311 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 406, 398 |
| Conread position: | 109-456 |
| Cow position: | chr14:3155410-3155757 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-567 |
| Cow position: | chr14:3080758-3080303 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 112-567 |
| Cow position: | chr14:3080842-3080387 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 112-569 |
| Cow position: | chr14:25783936-25784393 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-569 |
| Cow position: | chr14:25784188-25784645 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 48 |
| Conread position: | 112-570 |
| Cow position: | chr14:25794758-25794299 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 112-570 |
| Cow position: | chr14:25795010-25794552 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 132 |
| Conread position: | 112-579 |
| Cow position: | chr14:25783516-25783983 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 383 |
| Conread position: | 113-567 |
| Cow position: | chr14:25783349-25783803 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 77 |
| Conread position: | 133-585 |
| Cow position: | chr14:25876344-25876796 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 160-568 |
| Cow position: | chr14:25783312-25783720 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 157 |
| Conread position: | 160-572 |
| Cow position: | chr14:25795466-25795054 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 182, 163 |
| Conread position: | 169-567 |
| Cow position: | chr14:3100860-3100462 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 311, 297 |
| Conread position: | 173-558 |
| Cow position: | chr14:25783493-25783878 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 149 |
| Conread position: | 185-567 |
| Cow position: | chr14:3155975-3156357 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 190-457 |
| Cow position: | chr14:3155407-3155674 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 209-587 |
| Cow position: | chr14:25859201-25859579 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 46 |
| Conread position: | 246-569 |
| Cow position: | chr14:25783314-25783637 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 131, 112 |
| Conread position: | 248-561 |
| Cow position: | chr14:3127882-3127569 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.