Cow genome map

Conread name: Ss1.1-rmed25c_n3.5

Conread position: 2-503
Cow position:
Alignm length: 504
Alignm identity: 309
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 7, 133

Conread position: 2-561
Cow position:
Alignm length: 562
Alignm identity: 333
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 7, 464

Conread position: 3-389
Cow position:
Alignm length: 390
Alignm identity: 239
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 6, 158

Conread position: 8-447
Cow position:
Alignm length: 443
Alignm identity: 262
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 121, 126

Conread position: 8-460
Cow position:
Alignm length: 456
Alignm identity: 272
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 121, 126

Conread position: 8-567
Cow position:
Alignm length: 561
Alignm identity: 335
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 71, 81

Conread position: 8-586
Cow position:
Alignm length: 579
Alignm identity: 334
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 8-598
Cow position:
Alignm length: 593
Alignm identity: 352
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 143, 157

Conread position: 9-585
Cow position:
Alignm length: 581
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 81

Conread position: 11-459
Cow position:
Alignm length: 452
Alignm identity: 272
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 118, 123

Conread position: 14-557
Cow position:
Alignm length: 544
Alignm identity: 318
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 14-602
Cow position:
Alignm length: 595
Alignm identity: 362
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 115, 120

Conread position: 14-602
Cow position:
Alignm length: 593
Alignm identity: 359
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 465, 498

Conread position: 22-600
Cow position:
Alignm length: 579
Alignm identity: 332
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 31-477
Cow position:
Alignm length: 453
Alignm identity: 282
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 48, 56

Conread position: 38-478
Cow position:
Alignm length: 441
Alignm identity: 265
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 38-561
Cow position:
Alignm length: 524
Alignm identity: 298
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 38-571
Cow position:
Alignm length: 538
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 52

Conread position: 39-556
Cow position:
Alignm length: 521
Alignm identity: 323
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 112, 126

Conread position: 53-438
Cow position:
Alignm length: 386
Alignm identity: 225
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 53-456
Cow position:
Alignm length: 405
Alignm identity: 241
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 273, 7

Conread position: 53-533
Cow position:
Alignm length: 484
Alignm identity: 285
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 424, 412

Conread position: 53-565
Cow position:
Alignm length: 518
Alignm identity: 301
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 70, 49

Conread position: 53-568
Cow position:
Alignm length: 516
Alignm identity: 309
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 53-587
Cow position:
Alignm length: 538
Alignm identity: 323
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 81

Conread position: 53-587
Cow position:
Alignm length: 537
Alignm identity: 326
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 76, 82

Conread position: 53-587
Cow position:
Alignm length: 538
Alignm identity: 322
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 76, 81

Conread position: 60-561
Cow position:
Alignm length: 502
Alignm identity: 292
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 60-561
Cow position:
Alignm length: 502
Alignm identity: 293
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 62-587
Cow position:
Alignm length: 529
Alignm identity: 319
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 67, 72

Conread position: 72-568
Cow position:
Alignm length: 502
Alignm identity: 316
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 9, 19

Conread position: 74-465
Cow position:
Alignm length: 395
Alignm identity: 254
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 77, 93

Conread position: 77-569
Cow position:
Alignm length: 493
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 77-569
Cow position:
Alignm length: 496
Alignm identity: 309
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 173, 12

Conread position: 80-570
Cow position:
Alignm length: 491
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 80-586
Cow position:
Alignm length: 510
Alignm identity: 308
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 172, 9

Conread position: 83-404
Cow position:
Alignm length: 328
Alignm identity: 203
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 22, 181

Conread position: 84-480
Cow position:
Alignm length: 399
Alignm identity: 253
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 67, 101

Conread position: 84-569
Cow position:
Alignm length: 490
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 83

Conread position: 85-568
Cow position:
Alignm length: 486
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 82

Conread position: 88-600
Cow position:
Alignm length: 513
Alignm identity: 303
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 89-485
Cow position:
Alignm length: 401
Alignm identity: 245
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 65, 73

Conread position: 89-501
Cow position:
Alignm length: 414
Alignm identity: 253
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 156, 160

Conread position: 89-561
Cow position:
Alignm length: 474
Alignm identity: 293
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 40, 45

Conread position: 89-587
Cow position:
Alignm length: 501
Alignm identity: 298
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 168, 161

Conread position: 97-579
Cow position:
Alignm length: 484
Alignm identity: 301
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 32, 37

Conread position: 102-456
Cow position:
Alignm length: 355
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 102-600
Cow position:
Alignm length: 504
Alignm identity: 300
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 248, 227

Conread position: 103-580
Cow position:
Alignm length: 481
Alignm identity: 285
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 48, 55

Conread position: 104-447
Cow position:
Alignm length: 345
Alignm identity: 211
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 25, 30

Conread position: 104-567
Cow position:
Alignm length: 465
Alignm identity: 275
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 406, 398

Conread position: 109-456
Cow position:
Alignm length: 348
Alignm identity: 211
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 112-567
Cow position:
Alignm length: 459
Alignm identity: 270
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 45, 53

Conread position: 112-567
Cow position:
Alignm length: 459
Alignm identity: 268
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 53

Conread position: 112-569
Cow position:
Alignm length: 458
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 112-569
Cow position:
Alignm length: 461
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 48

Conread position: 112-570
Cow position:
Alignm length: 462
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 38

Conread position: 112-570
Cow position:
Alignm length: 462
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 132

Conread position: 112-579
Cow position:
Alignm length: 469
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 388, 383

Conread position: 113-567
Cow position:
Alignm length: 458
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 77

Conread position: 133-585
Cow position:
Alignm length: 453
Alignm identity: 262
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 160-568
Cow position:
Alignm length: 413
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 157

Conread position: 160-572
Cow position:
Alignm length: 414
Alignm identity: 266
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 182, 163

Conread position: 169-567
Cow position:
Alignm length: 402
Alignm identity: 243
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 311, 297

Conread position: 173-558
Cow position:
Alignm length: 388
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 149

Conread position: 185-567
Cow position:
Alignm length: 383
Alignm identity: 239
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 190-457
Cow position:
Alignm length: 268
Alignm identity: 173
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 209-587
Cow position:
Alignm length: 380
Alignm identity: 224
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 46

Conread position: 246-569
Cow position:
Alignm length: 325
Alignm identity: 214
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 131, 112

Conread position: 248-561
Cow position:
Alignm length: 314
Alignm identity: 196
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.