Cow genome map
| Conread name: | Ss1.1-rmed25c_n3.5 |
| Conread position: | 39-586 |
| Cow position: | chr17:22473349-22473896 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 341 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 112, 121 |
| Conread position: | 42-568 |
| Cow position: | chr17:22590170-22589642 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 52-567 |
| Cow position: | chr17:22553075-22552561 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 319 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 270, 8 |
| Conread position: | 53-561 |
| Cow position: | chr17:22499281-22498774 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 309 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 53-567 |
| Cow position: | chr17:22552991-22552477 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-568 |
| Cow position: | chr17:22552655-22552140 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 324 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 92, 85 |
| Conread position: | 54-556 |
| Cow position: | chr17:22551983-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 277 |
| Conread position: | 54-568 |
| Cow position: | chr17:22552570-22552056 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 202 |
| Conread position: | 60-449 |
| Cow position: | chr17:22589563-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 61-567 |
| Cow position: | chr17:22552479-22551973 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 112, 100 |
| Conread position: | 62-558 |
| Cow position: | chr17:22452175-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 69-581 |
| Cow position: | chr17:22590308-22589797 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 168, 6 |
| Conread position: | 70-568 |
| Cow position: | chr17:22589972-22589474 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 8, 20 |
| Conread position: | 71-572 |
| Cow position: | chr17:22552721-22552221 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 395 |
| Conread position: | 80-382 |
| Cow position: | chr17:22498838-22498533 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 84-567 |
| Cow position: | chr17:22452237-22451754 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-567 |
| Cow position: | chr17:22552203-22551721 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 82 |
| Conread position: | 89-567 |
| Cow position: | chr17:22452316-22451838 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-567 |
| Cow position: | chr17:22452400-22451922 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 293 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-567 |
| Cow position: | chr17:22499330-22498852 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 89-567 |
| Cow position: | chr17:22552031-22551553 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 89-580 |
| Cow position: | chr17:22499078-22498587 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 68, 90 |
| Conread position: | 102-541 |
| Cow position: | chr17:22498981-22498542 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 275 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 218, 224 |
| Conread position: | 102-557 |
| Cow position: | chr17:22473496-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 226 |
| Conread position: | 102-585 |
| Cow position: | chr17:22589772-22589289 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 136, 150 |
| Conread position: | 104-588 |
| Cow position: | chr17:22589686-22589202 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 217, 238 |
| Conread position: | 105-567 |
| Cow position: | chr17:22553107-22552645 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 243, 225 |
| Conread position: | 119-463 |
| Cow position: | chr17:22498880-22498536 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 120-586 |
| Cow position: | chr17:22473262-22473728 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 285 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 134-602 |
| Cow position: | chr17:22499369-22498901 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 295 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 189-569 |
| Cow position: | chr17:22499396-22499018 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 191-569 |
| Cow position: | chr17:22553105-22552727 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 244-569 |
| Cow position: | chr17:22499427-22499102 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 28, 21 |
| Conread position: | 256-561 |
| Cow position: | chr17:22452401-22452096 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 76, 64 |
Show alignments to all cow chromosomes.