Cow genome map

Conread name: Ss1.1-rmed25c_n3.5

Conread position: 5-569
Cow position: chr19:23614172-23614734 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 18

Conread position: 6-579
Cow position: chr19:14939973-14940544 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 445, 9

Conread position: 8-327
Cow position: chr19:23650127-23650446 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 208
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 60, 51

Conread position: 8-333
Cow position: chr19:23597350-23597675 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 162, 157

Conread position: 8-555
Cow position: chr19:23649791-23650338 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 55

Conread position: 8-561
Cow position: chr19:23614089-23614642 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 51

Conread position: 8-561
Cow position: chr19:23614341-23614894 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 37

Conread position: 8-567
Cow position: chr19:14960322-14959767 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 157

Conread position: 8-579
Cow position: chr19:23614509-23615080 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 37

Conread position: 15-505
Cow position: chr19:14940568-14941057 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 288
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 482, 0

Conread position: 15-569
Cow position: chr19:14940232-14940786 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 22-573
Cow position: chr19:14960476-14959928 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 68

Conread position: 24-566
Cow position: chr19:23613433-23613975 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 66

Conread position: 40-457
Cow position: chr19:23649991-23650408 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 117, 127

Conread position: 52-547
Cow position: chr19:43570194-43569702 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 7

Conread position: 53-317
Cow position: chr19:14948352-14948089 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 6, 0

Conread position: 53-552
Cow position: chr19:20635519-20635020 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 36

Conread position: 53-561
Cow position: chr19:23649668-23650176 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 53-569
Cow position: chr19:14940186-14940702 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 53-580
Cow position: chr19:23614470-23614997 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 177

Conread position: 53-586
Cow position: chr19:23649752-23650285 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 55-569
Cow position: chr19:23596812-23597323 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 301
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 96, 105

Conread position: 61-567
Cow position: chr19:14940446-14940952 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 304
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 419, 412

Conread position: 62-553
Cow position: chr19:23614647-23615136 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 266

Conread position: 62-567
Cow position: chr19:23596987-23597489 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 62-582
Cow position: chr19:23614059-23614576 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 28

Conread position: 62-586
Cow position: chr19:23614311-23614835 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 182

Conread position: 70-438
Cow position: chr19:14940707-14941075 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 218
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 71-571
Cow position: chr19:23613816-23614315 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 19

Conread position: 73-564
Cow position: chr19:14959603-14959121 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 296
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 179, 172

Conread position: 73-576
Cow position: chr19:20635587-20635080 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 322
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 12, 105

Conread position: 82-567
Cow position: chr19:23649946-23650434 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 169

Conread position: 83-450
Cow position: chr19:14959678-14959310 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 231
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 44

Conread position: 83-567
Cow position: chr19:20677339-20677823 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 284
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 252, 238

Conread position: 84-522
Cow position: chr19:23597258-23597696 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 50

Conread position: 84-569
Cow position: chr19:43570247-43569762 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 76

Conread position: 85-557
Cow position: chr19:14948489-14948017 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 296
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 20, 85

Conread position: 89-567
Cow position: chr19:14940558-14941036 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 295
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 412, 399

Conread position: 89-585
Cow position: chr19:14959503-14959022 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 303
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 73

Conread position: 89-585
Cow position: chr19:23613750-23614246 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 89-605
Cow position: chr19:23613666-23614184 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 501, 0

Conread position: 91-567
Cow position: chr19:23649285-23649762 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 292
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 12, 70

Conread position: 91-585
Cow position: chr19:20677766-20678261 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 95

Conread position: 91-588
Cow position: chr19:20677682-20678180 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 307
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 12, 0

Conread position: 92-535
Cow position: chr19:14959257-14958820 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 270
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 138, 0

Conread position: 93-599
Cow position: chr19:23613334-23613840 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 94-582
Cow position: chr19:20677854-20678339 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 92

Conread position: 96-568
Cow position: chr19:20678025-20678496 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 7

Conread position: 98-586
Cow position: chr19:20677941-20678430 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 313
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 5, 100

Conread position: 102-451
Cow position: chr19:20678366-20678715 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 240, 229

Conread position: 102-460
Cow position: chr19:23597360-23597718 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 228
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 220, 226

Conread position: 102-567
Cow position: chr19:20677442-20677907 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 276
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 217, 222

Conread position: 102-567
Cow position: chr19:23597108-23597573 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 291
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 49, 63

Conread position: 102-567
Cow position: chr19:23649465-23649930 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 102-567
Cow position: chr19:23649549-23650014 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 297
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 84

Conread position: 102-585
Cow position: chr19:23597192-23597675 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 102-586
Cow position: chr19:23614015-23614499 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 63

Conread position: 103-566
Cow position: chr19:20677527-20677990 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 289
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 26, 32

Conread position: 104-569
Cow position: chr19:20635636-20635171 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 325

Conread position: 112-570
Cow position: chr19:23613605-23614063 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 291
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 207, 216

Conread position: 113-404
Cow position: chr19:23650148-23650439 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 184
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 118-568
Cow position: chr19:20678214-20678664 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 119-580
Cow position: chr19:20678299-20678757 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 291
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 67, 58

Conread position: 120-568
Cow position: chr19:14940421-14940869 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 210

Conread position: 120-580
Cow position: chr19:43570452-43570003 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 294
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 19, 45

Conread position: 122-567
Cow position: chr19:14959310-14958872 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 274
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 256, 14

Conread position: 133-569
Cow position: chr19:20677308-20677741 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 258
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 134-567
Cow position: chr19:20677642-20678075 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 280
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 205, 187

Conread position: 134-580
Cow position: chr19:14940015-14940461 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 115

Conread position: 158-561
Cow position: chr19:23649437-23649841 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 253
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 352, 340

Conread position: 164-570
Cow position: chr19:14916020-14916421 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 249
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 117, 109

Conread position: 171-586
Cow position: chr19:14960411-14959998 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 263

Conread position: 173-579
Cow position: chr19:14948484-14948079 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 249
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 84, 0

Conread position: 185-567
Cow position: chr19:20635639-20635257 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 234
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 304, 310

Conread position: 191-600
Cow position: chr19:14960475-14960068 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 259
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 36, 53

Conread position: 205-580
Cow position: chr19:14940002-14940377 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 123

Conread position: 205-586
Cow position: chr19:43570451-43570081 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 237
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 44

Conread position: 262-586
Cow position: chr19:20635646-20635322 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 61, 66

Conread position: 275-600
Cow position: chr19:14939988-14940313 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 219, 237

Show alignments to all cow chromosomes.