Cow genome map

Conread name: Ss1.1-rmed25c_n3.5

Conread position: 6-401
Cow position: chr22:46654413-46654809 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 238
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 86

Conread position: 8-567
Cow position: chr22:12399441-12398882 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 64

Conread position: 8-572
Cow position: chr22:12431841-12431278 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 346
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 98, 102

Conread position: 8-573
Cow position: chr22:12385685-12385119 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 82

Conread position: 8-573
Cow position: chr22:12399693-12399129 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 82

Conread position: 8-580
Cow position: chr22:11640673-11641245 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 353
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 121, 127

Conread position: 9-587
Cow position: chr22:46654081-46654659 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 343
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 64, 81

Conread position: 26-464
Cow position: chr22:12499459-12499897 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 271
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 52, 64

Conread position: 27-567
Cow position: chr22:12431990-12431450 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 336
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 125, 172

Conread position: 27-570
Cow position: chr22:12399590-12399047 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 222

Conread position: 31-570
Cow position: chr22:12499128-12499667 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 331
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 43, 28

Conread position: 31-600
Cow position: chr22:12476131-12475562 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 352
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 34, 28

Conread position: 38-472
Cow position: chr22:12385317-12384884 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 268
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 51

Conread position: 38-485
Cow position: chr22:11666460-11666907 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 274
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 119, 136

Conread position: 38-572
Cow position: chr22:11701114-11701648 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 324
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 119, 136

Conread position: 38-585
Cow position: chr22:12432315-12431768 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 334
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 112, 122

Conread position: 53-358
Cow position: chr22:12499654-12499959 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 194
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 53-366
Cow position: chr22:12475605-12475292 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 53-438
Cow position: chr22:11641055-11641439 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 241
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 193, 6

Conread position: 53-461
Cow position: chr22:12431040-12430632 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 256
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 95, 85

Conread position: 53-556
Cow position: chr22:12431208-12430705 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 308
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 261, 271

Conread position: 53-561
Cow position: chr22:12432384-12431876 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 313
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 353, 363

Conread position: 53-567
Cow position: chr22:11640887-11641400 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 328
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 122, 6

Conread position: 53-567
Cow position: chr22:12419267-12418737 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 295
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 149, 7

Conread position: 53-567
Cow position: chr22:12432216-12431702 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 311
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 101, 86

Conread position: 53-570
Cow position: chr22:12476277-12475760 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 117

Conread position: 53-570
Cow position: chr22:12498982-12499499 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 117

Conread position: 53-585
Cow position: chr22:12499066-12499598 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 325
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 523, 510

Conread position: 53-586
Cow position: chr22:12458496-12457963 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 357

Conread position: 54-586
Cow position: chr22:12476361-12475828 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 132

Conread position: 55-568
Cow position: chr22:12432465-12431953 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 7

Conread position: 59-570
Cow position: chr22:12385718-12385205 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 20

Conread position: 61-457
Cow position: chr22:12418907-12418511 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 241
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 125

Conread position: 62-569
Cow position: chr22:12431367-12430860 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 306
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 161, 187

Conread position: 62-570
Cow position: chr22:11640811-11641319 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 62-580
Cow position: chr22:11640643-11641161 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 307
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 209, 203

Conread position: 68-574
Cow position: chr22:12432117-12431612 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 308
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 84, 97

Conread position: 70-601
Cow position: chr22:12498915-12499446 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 115

Conread position: 71-449
Cow position: chr22:12458142-12457762 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 242
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 267, 258

Conread position: 73-523
Cow position: chr22:12458224-12457774 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 284
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 8, 17

Conread position: 73-561
Cow position: chr22:14429862-14430350 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 304
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 8, 14

Conread position: 74-567
Cow position: chr22:12385535-12385040 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 16

Conread position: 74-568
Cow position: chr22:12399459-12398965 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 16

Conread position: 76-568
Cow position: chr22:12499341-12499833 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 76-569
Cow position: chr22:12499423-12499918 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 7

Conread position: 76-580
Cow position: chr22:12475918-12475414 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 498, 487

Conread position: 84-575
Cow position: chr22:12431261-12430770 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 303
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 312, 318

Conread position: 84-580
Cow position: chr22:12399281-12398785 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 165

Conread position: 84-580
Cow position: chr22:12419321-12418808 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 284
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 90, 83

Conread position: 89-438
Cow position: chr22:12399108-12398759 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 232
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 239, 229

Conread position: 89-442
Cow position: chr22:12430920-12430567 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 217
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 76

Conread position: 89-557
Cow position: chr22:12431088-12430620 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 294
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 314, 322

Conread position: 89-586
Cow position: chr22:12399780-12399283 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 45

Conread position: 89-586
Cow position: chr22:12431424-12430927 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 306
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 46

Conread position: 91-567
Cow position: chr22:14430131-14430608 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 288
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 66

Conread position: 96-400
Cow position: chr22:14468381-14468685 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 195
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 230

Conread position: 97-561
Cow position: chr22:12458536-12458072 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 290
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 60, 68

Conread position: 97-567
Cow position: chr22:12458368-12457898 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 288
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 219, 229

Conread position: 102-402
Cow position: chr22:12499619-12499919 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 49, 58

Conread position: 102-402
Cow position: chr22:14468304-14468604 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 188
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 67, 62

Conread position: 102-455
Cow position: chr22:12475640-12475287 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 237
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 49, 56

Conread position: 102-534
Cow position: chr22:11641019-11641451 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 279
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 249, 228

Conread position: 102-551
Cow position: chr22:14430479-14430928 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 269
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 138, 154

Conread position: 102-556
Cow position: chr22:14442119-14442575 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 274
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 64

Conread position: 102-561
Cow position: chr22:12431579-12431120 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 273
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 169, 163

Conread position: 102-566
Cow position: chr22:14468136-14468600 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 267
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 102-567
Cow position: chr22:12475808-12475343 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 65

Conread position: 102-568
Cow position: chr22:46654090-46654556 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 297
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 60

Conread position: 102-570
Cow position: chr22:46654258-46654726 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 293
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 48, 60

Conread position: 102-572
Cow position: chr22:14430227-14430696 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 286
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 216, 223

Conread position: 102-572
Cow position: chr22:14468052-14468522 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 284
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 60

Conread position: 104-567
Cow position: chr22:14429809-14430272 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 31

Conread position: 107-580
Cow position: chr22:12458610-12458137 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 49

Conread position: 112-465
Cow position: chr22:12432493-12432140 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 112-561
Cow position: chr22:12499293-12499742 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 281
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 17, 22

Conread position: 112-568
Cow position: chr22:12476386-12475931 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 285
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 133, 155

Conread position: 112-569
Cow position: chr22:12431485-12431028 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 282
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 63, 53

Conread position: 112-585
Cow position: chr22:12476134-12475661 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 257

Conread position: 112-600
Cow position: chr22:12475966-12475478 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 304
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 476, 484

Conread position: 113-567
Cow position: chr22:12419023-12418569 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 52

Conread position: 113-572
Cow position: chr22:14430322-14430781 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 272
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 140, 135

Conread position: 113-588
Cow position: chr22:14429650-14430125 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 288
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 16, 22

Conread position: 122-559
Cow position: chr22:12399909-12399478 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 38

Conread position: 125-461
Cow position: chr22:46654029-46654365 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 212
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 29, 40

Conread position: 149-573
Cow position: chr22:12498827-12499249 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 265
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 13, 0

Conread position: 172-566
Cow position: chr22:14467954-14468348 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 243
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 168, 158

Conread position: 174-600
Cow position: chr22:12458627-12458201 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 264
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 414, 422

Conread position: 184-575
Cow position: chr22:11640597-11640988 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 256
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 101, 90

Conread position: 191-450
Cow position: chr22:11701435-11701694 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 172
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 141, 128

Conread position: 191-561
Cow position: chr22:12432498-12432128 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 242
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 290, 303

Conread position: 191-567
Cow position: chr22:12476391-12476015 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 238
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 193-567
Cow position: chr22:12399923-12399554 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 246
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 14, 83

Conread position: 197-600
Cow position: chr22:12419023-12418620 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 252
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 392, 399

Conread position: 235-586
Cow position: chr22:12385710-12385357 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 221
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 59, 40

Conread position: 241-561
Cow position: chr22:12432532-12432212 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 192
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 255-568
Cow position: chr22:12476411-12476099 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 190
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 303, 0

Conread position: 255-579
Cow position: chr22:12498848-12499172 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 195
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 256-568
Cow position: chr22:14467954-14468265 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 201
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 63, 74

Conread position: 272-588
Cow position: chr22:14429641-14429957 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 198
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 47, 54

Show alignments to all cow chromosomes.