Cow genome map


           Conread name:
           Ss1.1-rmed25c_n3.5
        

               Conread position:
               6-401
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               6, 86
               

               Conread position:
               8-567
               

               Cow position:
               
               

               Alignm length:
               561
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 64
               

               Conread position:
               8-572
               

               Cow position:
               
               

               Alignm length:
               567
               

               Alignm identity:
               346
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               98, 102
               

               Conread position:
               8-573
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 82
               

               Conread position:
               8-573
               

               Cow position:
               
               

               Alignm length:
               569
               

               Alignm identity:
               367
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 82
               

               Conread position:
               8-580
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               353
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               121, 127
               

               Conread position:
               9-587
               

               Cow position:
               
               

               Alignm length:
               582
               

               Alignm identity:
               343
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               64, 81
               

               Conread position:
               26-464
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               271
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               52, 64
               

               Conread position:
               27-567
               

               Cow position:
               
               

               Alignm length:
               547
               

               Alignm identity:
               336
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               125, 172
               

               Conread position:
               27-570
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 222
               

               Conread position:
               31-570
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               331
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               43, 28
               

               Conread position:
               31-600
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               352
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               34, 28
               

               Conread position:
               38-472
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               268
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               43, 51
               

               Conread position:
               38-485
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               119, 136
               

               Conread position:
               38-572
               

               Cow position:
               
               

               Alignm length:
               539
               

               Alignm identity:
               324
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               119, 136
               

               Conread position:
               38-585
               

               Cow position:
               
               

               Alignm length:
               549
               

               Alignm identity:
               334
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               112, 122
               

               Conread position:
               53-358
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               194
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               53-366
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               53-438
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               241
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               193, 6
               

               Conread position:
               53-461
               

               Cow position:
               
               

               Alignm length:
               412
               

               Alignm identity:
               256
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               95, 85
               

               Conread position:
               53-556
               

               Cow position:
               
               

               Alignm length:
               505
               

               Alignm identity:
               308
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               261, 271
               

               Conread position:
               53-561
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               313
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               353, 363
               

               Conread position:
               53-567
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               328
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               122, 6
               

               Conread position:
               53-567
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               149, 7
               

               Conread position:
               53-567
               

               Cow position:
               
               

               Alignm length:
               517
               

               Alignm identity:
               311
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               101, 86
               

               Conread position:
               53-570
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 117
               

               Conread position:
               53-570
               

               Cow position:
               
               

               Alignm length:
               521
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 117
               

               Conread position:
               53-585
               

               Cow position:
               
               

               Alignm length:
               534
               

               Alignm identity:
               325
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               523, 510
               

               Conread position:
               53-586
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               347, 357
               

               Conread position:
               54-586
               

               Cow position:
               
               

               Alignm length:
               538
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 132
               

               Conread position:
               55-568
               

               Cow position:
               
               

               Alignm length:
               519
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               268, 7
               

               Conread position:
               59-570
               

               Cow position:
               
               

               Alignm length:
               518
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 20
               

               Conread position:
               61-457
               

               Cow position:
               
               

               Alignm length:
               399
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               102, 125
               

               Conread position:
               62-569
               

               Cow position:
               
               

               Alignm length:
               510
               

               Alignm identity:
               306
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               161, 187
               

               Conread position:
               62-570
               

               Cow position:
               
               

               Alignm length:
               509
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               62-580
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               307
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               209, 203
               

               Conread position:
               68-574
               

               Cow position:
               
               

               Alignm length:
               508
               

               Alignm identity:
               308
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               84, 97
               

               Conread position:
               70-601
               

               Cow position:
               
               

               Alignm length:
               536
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 115
               

               Conread position:
               71-449
               

               Cow position:
               
               

               Alignm length:
               382
               

               Alignm identity:
               242
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               267, 258
               

               Conread position:
               73-523
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               284
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               8, 17
               

               Conread position:
               73-561
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               304
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               8, 14
               

               Conread position:
               74-567
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               74-568
               

               Cow position:
               
               

               Alignm length:
               496
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 16
               

               Conread position:
               76-568
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               76-569
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 7
               

               Conread position:
               76-580
               

               Cow position:
               
               

               Alignm length:
               506
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               498, 487
               

               Conread position:
               84-575
               

               Cow position:
               
               

               Alignm length:
               493
               

               Alignm identity:
               303
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               312, 318
               

               Conread position:
               84-580
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 165
               

               Conread position:
               84-580
               

               Cow position:
               
               

               Alignm length:
               515
               

               Alignm identity:
               284
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               90, 83
               

               Conread position:
               89-438
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               232
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               239, 229
               

               Conread position:
               89-442
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               62, 76
               

               Conread position:
               89-557
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               294
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               314, 322
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 45
               

               Conread position:
               89-586
               

               Cow position:
               
               

               Alignm length:
               500
               

               Alignm identity:
               306
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               40, 46
               

               Conread position:
               91-567
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               12, 66
               

               Conread position:
               96-400
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               195
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               7, 230
               

               Conread position:
               97-561
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               290
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               60, 68
               

               Conread position:
               97-567
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               288
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               219, 229
               

               Conread position:
               102-402
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               201
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               49, 58
               

               Conread position:
               102-402
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               67, 62
               

               Conread position:
               102-455
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               237
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               49, 56
               

               Conread position:
               102-534
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               279
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               249, 228
               

               Conread position:
               102-551
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               269
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               138, 154
               

               Conread position:
               102-556
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               274
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               13, 64
               

               Conread position:
               102-561
               

               Cow position:
               
               

               Alignm length:
               462
               

               Alignm identity:
               273
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               169, 163
               

               Conread position:
               102-566
               

               Cow position:
               
               

               Alignm length:
               465
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               102-567
               

               Cow position:
               
               

               Alignm length:
               468
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 65
               

               Conread position:
               102-568
               

               Cow position:
               
               

               Alignm length:
               473
               

               Alignm identity:
               297
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               48, 60
               

               Conread position:
               102-570
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               293
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               48, 60
               

               Conread position:
               102-572
               

               Cow position:
               
               

               Alignm length:
               474
               

               Alignm identity:
               286
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               216, 223
               

               Conread position:
               102-572
               

               Cow position:
               
               

               Alignm length:
               475
               

               Alignm identity:
               284
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               70, 60
               

               Conread position:
               104-567
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 31
               

               Conread position:
               107-580
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 49
               

               Conread position:
               112-465
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               112-561
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               281
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               17, 22
               

               Conread position:
               112-568
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               285
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               133, 155
               

               Conread position:
               112-569
               

               Cow position:
               
               

               Alignm length:
               459
               

               Alignm identity:
               282
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               63, 53
               

               Conread position:
               112-585
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 257
               

               Conread position:
               112-600
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               304
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               476, 484
               

               Conread position:
               113-567
               

               Cow position:
               
               

               Alignm length:
               456
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 52
               

               Conread position:
               113-572
               

               Cow position:
               
               

               Alignm length:
               464
               

               Alignm identity:
               272
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               140, 135
               

               Conread position:
               113-588
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               288
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               16, 22
               

               Conread position:
               122-559
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 38
               

               Conread position:
               125-461
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               212
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               29, 40
               

               Conread position:
               149-573
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               265
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               172-566
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               243
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               168, 158
               

               Conread position:
               174-600
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               264
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               414, 422
               

               Conread position:
               184-575
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               256
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               101, 90
               

               Conread position:
               191-450
               

               Cow position:
               
               

               Alignm length:
               263
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               141, 128
               

               Conread position:
               191-561
               

               Cow position:
               
               

               Alignm length:
               372
               

               Alignm identity:
               242
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               290, 303
               

               Conread position:
               191-567
               

               Cow position:
               
               

               Alignm length:
               377
               

               Alignm identity:
               238
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               193-567
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               246
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               14, 83
               

               Conread position:
               197-600
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               252
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               392, 399
               

               Conread position:
               235-586
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               59, 40
               

               Conread position:
               241-561
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               255-568
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               303, 0
               

               Conread position:
               255-579
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               195
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               256-568
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               63, 74
               

               Conread position:
               272-588
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               198
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               47, 54
               
Show alignments to all cow chromosomes.